Wall clock time and date at job start Tue Mar 31 2020 21:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35245 * 126.69099 * 2 1 4 4 C 1.42045 * 103.95180 * 180.02562 * 3 2 1 5 5 N 1.39361 * 126.89653 * 179.97438 * 4 3 2 6 6 C 1.34785 * 119.99922 * 0.02562 * 5 4 3 7 7 O 1.21351 * 119.99882 * 0.02562 * 6 5 4 8 8 C 1.49378 * 119.99686 * 180.02562 * 6 5 4 9 9 O 1.21351 * 120.00432 * 0.02562 * 8 6 5 10 10 N 1.34774 * 119.99324 * 179.97438 * 8 6 5 11 11 C 1.46503 * 119.99845 * 179.97438 * 10 8 6 12 12 H 1.09004 * 109.46070 * 35.00198 * 11 10 8 13 13 C 1.53036 * 109.46217 * 275.03061 * 11 10 8 14 14 C 1.53192 * 109.31594 * 178.61428 * 13 11 10 15 15 N 1.46923 * 108.77471 * 54.62905 * 14 13 11 16 16 C 1.36946 * 120.62807 * 126.41478 * 15 14 13 17 17 H 1.07996 * 119.99924 * 331.82772 * 16 15 14 18 18 C 1.38808 * 120.00037 * 151.82540 * 16 15 14 19 19 N 1.31625 * 119.99830 * 343.07159 * 18 16 15 20 20 Si 1.86799 * 120.00058 * 163.06142 * 18 16 15 21 21 H 1.48496 * 109.47128 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46759 * 120.00125 * 20 18 16 23 23 H 1.48489 * 109.47433 * 240.00286 * 20 18 16 24 24 C 1.46918 * 118.74261 * 306.39541 * 15 14 13 25 25 C 1.53039 * 109.46097 * 154.97049 * 11 10 8 26 26 H 1.08993 * 109.50427 * 301.33962 * 25 11 10 27 27 O 1.42908 * 109.49543 * 61.43868 * 25 11 10 28 28 N 1.30748 * 106.20868 * 0.02562 * 4 3 2 29 29 O 1.20919 * 111.46753 * 359.97438 * 28 4 3 30 30 H 1.09001 * 109.47367 * 89.99431 * 1 2 3 31 31 H 1.09000 * 109.47109 * 209.99719 * 1 2 3 32 32 H 1.09002 * 109.46718 * 329.99247 * 1 2 3 33 33 H 1.08002 * 128.02166 * 359.97438 * 3 2 1 34 34 H 0.97000 * 120.00288 * 180.02562 * 5 4 3 35 35 H 0.97004 * 120.00640 * 359.97438 * 10 8 6 36 36 H 1.09000 * 109.49892 * 298.56399 * 13 11 10 37 37 H 1.09004 * 109.49831 * 58.65905 * 13 11 10 38 38 H 1.09001 * 109.59035 * 174.42090 * 14 13 11 39 39 H 1.08996 * 109.58294 * 294.84837 * 14 13 11 40 40 H 0.96997 * 119.99645 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.58823 * 173.39337 * 24 15 14 42 42 H 1.08996 * 109.58897 * 293.67576 * 24 15 14 43 43 H 0.96702 * 113.99607 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6252 0.5354 -0.0006 5 7 4.8276 1.2399 -0.0014 6 6 4.8190 2.5877 -0.0010 7 8 3.7643 3.1877 0.0004 8 6 6.1079 3.3428 -0.0024 9 8 7.1627 2.7427 -0.0043 10 7 6.0993 4.6905 -0.0026 11 6 7.3633 5.4311 -0.0034 12 1 8.1019 4.8882 -0.5932 13 6 7.8680 5.5799 1.4337 14 6 9.2068 6.3244 1.4261 15 7 9.0363 7.5968 0.7115 16 6 9.3962 8.7804 1.2988 17 1 9.3714 8.8793 2.3739 18 6 9.7930 9.8530 0.5121 19 7 10.1449 9.6557 -0.7408 20 14 9.8273 11.5766 1.2315 21 1 9.3898 11.5299 2.6498 22 1 11.2089 12.1163 1.1577 23 1 8.9114 12.4538 0.4591 24 6 8.4727 7.5752 -0.6451 25 6 7.1419 6.8168 -0.6139 26 1 6.7603 6.7104 -1.6293 27 8 6.1981 7.5415 0.1775 28 7 3.4765 -0.7636 -0.0015 29 8 2.3081 -1.0752 -0.0010 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5140 33 1 2.0304 2.1263 -0.0004 34 1 5.6708 0.7603 -0.0021 35 1 5.2561 5.1702 -0.0022 36 1 7.1412 6.1444 2.0179 37 1 8.0031 4.5928 1.8759 38 1 9.5219 6.5202 2.4510 39 1 9.9586 5.7190 0.9198 40 1 10.4218 10.4053 -1.2906 41 1 8.3033 8.5964 -0.9868 42 1 9.1657 7.0741 -1.3208 43 1 6.0097 8.4311 -0.1516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100109703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:23 Heat of formation + Delta-G solvation = -20.205066 kcal Electronic energy + Delta-G solvation = -29249.409130 eV Core-core repulsion = 24913.508755 eV Total energy + Delta-G solvation = -4335.900375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.21888 -41.08141 -39.30766 -37.96589 -36.21729 -34.87511 -34.53640 -33.97112 -32.32864 -32.17718 -29.66729 -29.18563 -28.19466 -26.34297 -24.86044 -23.60030 -22.49300 -21.94980 -21.31361 -20.48562 -19.70532 -18.43721 -18.03708 -17.83627 -17.27175 -17.07400 -16.29183 -16.12458 -15.96090 -15.48858 -15.01671 -14.49709 -14.28341 -14.02896 -13.92293 -13.89917 -13.84023 -13.67122 -13.31661 -12.89663 -12.87145 -12.29190 -12.15619 -12.10506 -11.86653 -11.58804 -11.35695 -11.24951 -10.87072 -10.64929 -10.58279 -10.29161 -10.12383 -9.93416 -9.77193 -9.74081 -9.29342 -9.25262 -8.98660 -8.57545 -6.75613 -5.87892 -3.29172 0.79122 1.24497 1.75244 2.05419 2.76479 3.01539 3.21818 3.31999 3.40975 3.43539 3.94533 4.21421 4.42692 4.51131 4.67374 4.71112 4.85995 4.97739 5.15031 5.16152 5.30026 5.35059 5.39337 5.42957 5.54792 5.79909 5.91291 5.94918 5.98359 6.10987 6.30493 6.38106 6.45040 6.60742 6.70486 6.86692 7.06794 7.12135 7.34748 7.42934 7.73234 7.84383 7.94696 8.16948 8.36327 9.11346 9.74024 10.30328 11.21054 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032810 B = 0.002135 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.193391 B =13110.257132 C =13525.758338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.227 4.227 4 C 0.245 3.755 5 N -0.608 5.608 6 C 0.520 3.480 7 O -0.492 6.492 8 C 0.510 3.490 9 O -0.517 6.517 10 N -0.678 5.678 11 C 0.159 3.841 12 H 0.097 0.903 13 C -0.138 4.138 14 C 0.148 3.852 15 N -0.583 5.583 16 C -0.243 4.243 17 H 0.067 0.933 18 C -0.001 4.001 19 N -0.907 5.907 20 Si 0.903 3.097 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.145 3.855 25 C 0.073 3.927 26 H 0.047 0.953 27 O -0.559 6.559 28 N -0.384 5.384 29 O 0.100 5.900 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.192 0.808 34 H 0.432 0.568 35 H 0.416 0.584 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.021 0.979 40 H 0.254 0.746 41 H 0.098 0.902 42 H 0.030 0.970 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.758 -15.991 -0.971 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.249 4.249 4 C -0.004 4.004 5 N -0.261 5.261 6 C 0.302 3.698 7 O -0.363 6.363 8 C 0.288 3.712 9 O -0.394 6.394 10 N -0.329 5.329 11 C 0.056 3.944 12 H 0.115 0.885 13 C -0.178 4.178 14 C 0.021 3.979 15 N -0.305 5.305 16 C -0.373 4.373 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.552 5.552 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.018 3.982 25 C 0.011 3.989 26 H 0.065 0.935 27 O -0.365 6.365 28 N -0.099 5.099 29 O 0.039 5.961 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.209 0.791 34 H 0.271 0.729 35 H 0.252 0.748 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.116 0.884 42 H 0.048 0.952 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -16.810 -17.358 -0.720 24.174 hybrid contribution -0.117 2.120 -0.115 2.127 sum -16.927 -15.238 -0.836 22.790 Atomic orbital electron populations 1.20368 0.83547 1.04865 1.04324 1.24468 0.96569 0.85705 1.01900 1.22738 0.89094 1.02291 1.10813 1.20469 0.88142 0.88994 1.02756 1.42119 1.07156 1.06014 1.70855 1.20595 0.90947 0.81653 0.76642 1.90710 1.32290 1.68046 1.45239 1.19475 0.88024 0.84063 0.79594 1.90806 1.31448 1.68377 1.48730 1.46086 1.12263 1.04406 1.70160 1.21290 0.83751 0.90258 0.99070 0.88466 1.22350 1.00544 1.00055 0.94896 1.20893 0.92388 0.87642 0.96935 1.43896 1.71099 1.01448 1.14039 1.19219 1.37883 0.88563 0.91610 0.91557 1.25044 0.99031 0.99174 0.96651 1.70020 1.47552 1.30018 1.07595 0.86200 0.77255 0.84604 0.78591 1.20243 1.21790 1.21592 1.21456 0.88826 1.00576 0.87343 1.22849 0.93400 0.90780 0.91841 0.93542 1.86349 1.62725 1.31380 1.56021 1.74091 0.97606 1.12950 1.25210 1.84811 1.10364 1.32383 1.68589 0.89182 0.89654 0.88750 0.79106 0.72920 0.74767 0.90811 0.92690 0.92184 0.96065 0.93635 0.88441 0.95233 0.77518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.45 36.01 0.38 0.10 16 2 C -0.02 -0.19 7.48 -35.37 -0.26 -0.45 16 3 C -0.23 -2.37 9.79 -39.19 -0.38 -2.75 16 4 C 0.25 2.95 8.17 -154.93 -1.27 1.69 16 5 N -0.61 -7.11 5.41 -11.86 -0.06 -7.17 16 6 C 0.52 6.61 7.85 -11.62 -0.09 6.52 16 7 O -0.49 -6.61 13.75 5.50 0.08 -6.53 16 8 C 0.51 7.17 7.85 -11.62 -0.09 7.08 16 9 O -0.52 -8.26 16.14 5.50 0.09 -8.17 16 10 N -0.68 -9.67 5.04 -54.22 -0.27 -9.95 16 11 C 0.16 2.63 2.20 -67.89 -0.15 2.48 16 12 H 0.10 1.68 7.58 -51.93 -0.39 1.29 16 13 C -0.14 -2.46 5.51 -26.61 -0.15 -2.60 16 14 C 0.15 3.05 6.52 -3.71 -0.02 3.02 16 15 N -0.58 -13.77 2.93 -172.33 -0.51 -14.28 16 16 C -0.24 -6.38 9.58 -15.06 -0.14 -6.52 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 18 C 0.00 -0.03 4.92 -17.43 -0.09 -0.11 16 19 N -0.91 -25.03 11.20 55.49 0.62 -24.41 16 20 Si 0.90 20.95 29.59 -169.99 -5.03 15.92 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 24 C 0.15 3.15 4.95 -3.71 -0.02 3.13 16 25 C 0.07 1.24 3.38 -26.61 -0.09 1.15 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 O -0.56 -9.42 12.09 -35.23 -0.43 -9.85 16 28 N -0.38 -4.65 12.10 31.18 0.38 -4.28 16 29 O 0.10 1.03 11.19 17.06 0.19 1.23 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.19 1.99 6.22 -52.49 -0.33 1.67 16 34 H 0.43 4.56 8.29 -40.82 -0.34 4.22 16 35 H 0.42 5.63 7.73 -40.82 -0.32 5.31 16 36 H 0.07 1.40 7.61 -51.93 -0.40 1.00 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.10 2.33 6.06 -51.93 -0.31 2.02 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.38 5.49 9.08 45.56 0.41 5.91 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -31.05 363.08 -6.44 -37.49 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -4.59 Total: 11.79 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: -2.38 Total: 12.73 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.16 Total: -60.09 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.07 Total: -23.33 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.05 -6.44 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100109703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.289 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds