Wall clock time and date at job start Tue Mar 31 2020 21:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35245 * 126.69099 * 2 1 4 4 C 1.42045 * 103.95180 * 180.02562 * 3 2 1 5 5 N 1.39361 * 126.89653 * 179.97438 * 4 3 2 6 6 C 1.34785 * 119.99922 * 0.02562 * 5 4 3 7 7 O 1.21351 * 119.99882 * 0.02562 * 6 5 4 8 8 C 1.49378 * 119.99686 * 180.02562 * 6 5 4 9 9 O 1.21351 * 120.00432 * 0.02562 * 8 6 5 10 10 N 1.34774 * 119.99324 * 179.97438 * 8 6 5 11 11 C 1.46503 * 119.99845 * 179.97438 * 10 8 6 12 12 H 1.09004 * 109.46070 * 35.00198 * 11 10 8 13 13 C 1.53036 * 109.46217 * 275.03061 * 11 10 8 14 14 C 1.53192 * 109.31594 * 178.61428 * 13 11 10 15 15 N 1.46923 * 108.77471 * 54.62905 * 14 13 11 16 16 C 1.36946 * 120.62807 * 126.41478 * 15 14 13 17 17 H 1.07996 * 119.99924 * 331.82772 * 16 15 14 18 18 C 1.38808 * 120.00037 * 151.82540 * 16 15 14 19 19 N 1.31625 * 119.99830 * 343.07159 * 18 16 15 20 20 Si 1.86799 * 120.00058 * 163.06142 * 18 16 15 21 21 H 1.48496 * 109.47128 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46759 * 120.00125 * 20 18 16 23 23 H 1.48489 * 109.47433 * 240.00286 * 20 18 16 24 24 C 1.46918 * 118.74261 * 306.39541 * 15 14 13 25 25 C 1.53039 * 109.46097 * 154.97049 * 11 10 8 26 26 H 1.08993 * 109.50427 * 301.33962 * 25 11 10 27 27 O 1.42908 * 109.49543 * 61.43868 * 25 11 10 28 28 N 1.30748 * 106.20868 * 0.02562 * 4 3 2 29 29 O 1.20919 * 111.46753 * 359.97438 * 28 4 3 30 30 H 1.09001 * 109.47367 * 89.99431 * 1 2 3 31 31 H 1.09000 * 109.47109 * 209.99719 * 1 2 3 32 32 H 1.09002 * 109.46718 * 329.99247 * 1 2 3 33 33 H 1.08002 * 128.02166 * 359.97438 * 3 2 1 34 34 H 0.97000 * 120.00288 * 180.02562 * 5 4 3 35 35 H 0.97004 * 120.00640 * 359.97438 * 10 8 6 36 36 H 1.09000 * 109.49892 * 298.56399 * 13 11 10 37 37 H 1.09004 * 109.49831 * 58.65905 * 13 11 10 38 38 H 1.09001 * 109.59035 * 174.42090 * 14 13 11 39 39 H 1.08996 * 109.58294 * 294.84837 * 14 13 11 40 40 H 0.96997 * 119.99645 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.58823 * 173.39337 * 24 15 14 42 42 H 1.08996 * 109.58897 * 293.67576 * 24 15 14 43 43 H 0.96702 * 113.99607 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6252 0.5354 -0.0006 5 7 4.8276 1.2399 -0.0014 6 6 4.8190 2.5877 -0.0010 7 8 3.7643 3.1877 0.0004 8 6 6.1079 3.3428 -0.0024 9 8 7.1627 2.7427 -0.0043 10 7 6.0993 4.6905 -0.0026 11 6 7.3633 5.4311 -0.0034 12 1 8.1019 4.8882 -0.5932 13 6 7.8680 5.5799 1.4337 14 6 9.2068 6.3244 1.4261 15 7 9.0363 7.5968 0.7115 16 6 9.3962 8.7804 1.2988 17 1 9.3714 8.8793 2.3739 18 6 9.7930 9.8530 0.5121 19 7 10.1449 9.6557 -0.7408 20 14 9.8273 11.5766 1.2315 21 1 9.3898 11.5299 2.6498 22 1 11.2089 12.1163 1.1577 23 1 8.9114 12.4538 0.4591 24 6 8.4727 7.5752 -0.6451 25 6 7.1419 6.8168 -0.6139 26 1 6.7603 6.7104 -1.6293 27 8 6.1981 7.5415 0.1775 28 7 3.4765 -0.7636 -0.0015 29 8 2.3081 -1.0752 -0.0010 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5140 33 1 2.0304 2.1263 -0.0004 34 1 5.6708 0.7603 -0.0021 35 1 5.2561 5.1702 -0.0022 36 1 7.1412 6.1444 2.0179 37 1 8.0031 4.5928 1.8759 38 1 9.5219 6.5202 2.4510 39 1 9.9586 5.7190 0.9198 40 1 10.4218 10.4053 -1.2906 41 1 8.3033 8.5964 -0.9868 42 1 9.1657 7.0741 -1.3208 43 1 6.0097 8.4311 -0.1516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100109703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:22 Heat of formation + Delta-G solvation = -44.143739 kcal Electronic energy + Delta-G solvation = -29250.447189 eV Core-core repulsion = 24913.508755 eV Total energy + Delta-G solvation = -4336.938434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.03339 -42.17111 -40.54714 -39.34068 -37.19469 -36.49017 -35.83498 -34.61123 -33.93456 -33.18058 -31.33828 -30.75013 -28.71434 -27.72765 -26.33658 -24.64614 -23.98612 -23.42913 -22.23629 -21.61171 -21.14813 -19.67799 -18.96277 -18.85784 -18.69385 -17.98002 -17.44840 -17.23607 -17.18940 -17.05528 -16.63049 -15.78897 -15.59469 -15.41136 -15.36559 -15.03537 -14.79869 -14.51547 -14.40253 -13.96753 -13.83512 -13.66553 -13.41402 -13.18328 -13.06478 -12.94940 -12.77717 -12.65726 -12.36602 -12.30041 -12.27269 -12.01880 -11.84422 -11.48527 -11.01653 -10.76350 -10.59331 -10.48224 -10.28455 -10.11038 -8.67223 -7.87757 -5.31501 -0.20117 0.48289 0.72938 1.15686 1.47198 1.51070 1.60623 1.95228 2.04219 2.24322 2.52082 3.03205 3.24686 3.27358 3.37063 3.65231 3.72323 3.81048 3.96049 3.98506 4.30834 4.31324 4.36346 4.58525 4.59500 4.62992 4.76956 4.81516 4.84471 4.89455 5.06379 5.06586 5.15719 5.21459 5.26714 5.42737 5.52709 5.57945 5.66694 6.05685 6.36256 6.38244 6.70222 6.91294 7.15459 7.16629 7.83284 8.35299 9.18787 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032810 B = 0.002135 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.193391 B =13110.257132 C =13525.758338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.001 4.001 3 C -0.249 4.249 4 C 0.226 3.774 5 N -0.602 5.602 6 C 0.529 3.471 7 O -0.498 6.498 8 C 0.516 3.484 9 O -0.535 6.535 10 N -0.670 5.670 11 C 0.166 3.834 12 H 0.092 0.908 13 C -0.123 4.123 14 C 0.145 3.855 15 N -0.599 5.599 16 C -0.251 4.251 17 H 0.061 0.939 18 C -0.047 4.047 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.297 1.297 23 H -0.286 1.286 24 C 0.150 3.850 25 C 0.089 3.911 26 H 0.073 0.927 27 O -0.562 6.562 28 N -0.404 5.404 29 O 0.099 5.901 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.191 0.809 34 H 0.435 0.565 35 H 0.422 0.578 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.018 0.982 40 H 0.251 0.749 41 H 0.073 0.927 42 H 0.010 0.990 43 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.136 -16.739 -0.688 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.272 4.272 4 C -0.022 4.022 5 N -0.255 5.255 6 C 0.310 3.690 7 O -0.370 6.370 8 C 0.296 3.704 9 O -0.413 6.413 10 N -0.322 5.322 11 C 0.062 3.938 12 H 0.110 0.890 13 C -0.163 4.163 14 C 0.019 3.981 15 N -0.322 5.322 16 C -0.381 4.381 17 H 0.079 0.921 18 C -0.242 4.242 19 N -0.581 5.581 20 Si 0.794 3.206 21 H -0.196 1.196 22 H -0.225 1.225 23 H -0.213 1.213 24 C 0.023 3.977 25 C 0.027 3.973 26 H 0.090 0.910 27 O -0.369 6.369 28 N -0.119 5.119 29 O 0.037 5.963 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.208 0.792 34 H 0.275 0.725 35 H 0.260 0.740 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.028 0.972 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -19.220 -18.135 -0.429 26.429 hybrid contribution 0.580 2.259 -0.189 2.340 sum -18.641 -15.876 -0.617 24.493 Atomic orbital electron populations 1.20660 0.80075 1.06451 1.05924 1.25207 0.98123 0.84320 0.98801 1.22820 0.88833 1.02891 1.12643 1.20727 0.88583 0.89346 1.03538 1.41991 1.07551 1.05640 1.70293 1.20141 0.90075 0.81880 0.76890 1.90713 1.32176 1.68250 1.45828 1.19606 0.88294 0.83812 0.78737 1.90804 1.32335 1.68710 1.49427 1.45830 1.11612 1.04495 1.70262 1.21025 0.84596 0.90185 0.98014 0.89032 1.22130 0.98547 0.99888 0.95762 1.20978 0.93992 0.86785 0.96381 1.44118 1.71602 1.01759 1.14690 1.19431 1.37320 0.89760 0.91603 0.92086 1.25686 0.99305 1.02198 0.97057 1.70154 1.48747 1.30579 1.08622 0.85243 0.76627 0.80605 0.78123 1.19614 1.22460 1.21299 1.21331 0.90690 0.99645 0.86036 1.22550 0.90970 0.90362 0.93387 0.90957 1.86327 1.62079 1.32236 1.56296 1.74086 0.98643 1.13092 1.26080 1.84782 1.10131 1.33050 1.68324 0.87345 0.87869 0.87319 0.79184 0.72508 0.74001 0.91603 0.91574 0.92429 0.96412 0.94024 0.90885 0.97218 0.76280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.45 71.24 0.74 0.43 16 2 C 0.00 -0.01 7.48 25.00 0.19 0.18 16 3 C -0.25 -4.86 9.79 22.52 0.22 -4.64 16 4 C 0.23 5.25 8.17 134.15 1.10 6.35 16 5 N -0.60 -13.61 5.41 -310.81 -1.68 -15.29 16 6 C 0.53 12.83 7.85 87.25 0.68 13.52 16 7 O -0.50 -12.67 13.75 -3.25 -0.04 -12.72 16 8 C 0.52 13.84 7.85 87.25 0.68 14.53 16 9 O -0.54 -16.54 16.14 -3.25 -0.05 -16.60 16 10 N -0.67 -18.04 5.04 -443.82 -2.24 -20.27 16 11 C 0.17 5.28 2.20 45.02 0.10 5.38 16 12 H 0.09 3.09 7.58 -2.38 -0.02 3.07 16 13 C -0.12 -4.26 5.51 30.67 0.17 -4.09 16 14 C 0.14 5.95 6.52 86.36 0.56 6.52 16 15 N -0.60 -28.54 2.93 -699.12 -2.05 -30.59 16 16 C -0.25 -13.25 9.58 84.03 0.81 -12.45 16 17 H 0.06 3.23 7.88 -2.91 -0.02 3.20 16 18 C -0.05 -2.52 4.92 84.86 0.42 -2.10 16 19 N -0.93 -52.45 11.20 21.65 0.24 -52.21 16 20 Si 0.97 43.36 29.59 68.60 2.03 45.39 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 23 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 24 C 0.15 6.55 4.95 86.37 0.43 6.97 16 25 C 0.09 2.94 3.38 30.67 0.10 3.04 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 O -0.56 -18.09 12.09 -148.98 -1.80 -19.89 16 28 N -0.40 -9.47 12.10 -56.34 -0.68 -10.15 16 29 O 0.10 1.89 11.19 71.20 0.80 2.69 16 30 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.10 0.13 8.14 -2.39 -0.02 0.12 16 32 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.19 3.71 6.22 -2.91 -0.02 3.70 16 34 H 0.44 8.97 8.29 -92.71 -0.77 8.20 16 35 H 0.42 10.55 7.73 -92.71 -0.72 9.84 16 36 H 0.07 2.40 7.61 -2.39 -0.02 2.39 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 2.35 7.93 -2.39 -0.02 2.33 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 41 H 0.07 3.55 6.06 -2.38 -0.01 3.54 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.39 10.75 9.08 -74.06 -0.67 10.08 16 Total: -1.00 -66.55 363.08 -0.34 -66.88 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -1.05 Total: 29.13 kcal Atomic # 6 Polarization: 27.42 SS G_CDS: 6.20 Total: 33.63 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -6.41 Total: -128.51 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -1.10 Total: -46.52 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -66.55 -0.34 -66.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100109703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.737 kcal (2) G-P(sol) polarization free energy of solvation -66.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds