Wall clock time and date at job start Tue Mar 31 2020 20:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99906 * 2 1 4 4 H 1.48499 * 109.47237 * 270.00664 * 3 2 1 5 5 H 1.48507 * 109.46840 * 30.00208 * 3 2 1 6 6 H 1.48502 * 109.47259 * 149.99835 * 3 2 1 7 7 C 1.38816 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99696 * 197.35709 * 7 2 1 9 9 N 1.36930 * 120.00019 * 17.35348 * 7 2 1 10 10 C 1.46929 * 120.63120 * 207.70099 * 9 7 2 11 11 C 1.53191 * 108.77370 * 233.58437 * 10 9 7 12 12 C 1.53040 * 109.31588 * 305.36777 * 11 10 9 13 13 H 1.09002 * 109.45359 * 181.38296 * 12 11 10 14 14 N 1.46506 * 109.45529 * 301.34476 * 12 11 10 15 15 C 1.34774 * 119.99759 * 275.06756 * 14 12 11 16 16 O 1.21282 * 120.00289 * 359.97438 * 15 14 12 17 17 C 1.50706 * 119.99971 * 180.02562 * 15 14 12 18 18 O 1.42903 * 109.47024 * 179.97438 * 17 15 14 19 19 C 1.35955 * 116.99761 * 179.97438 * 18 17 15 20 20 C 1.38663 * 120.06159 * 0.28138 * 19 18 17 21 21 C 1.38183 * 119.96365 * 180.22932 * 20 19 18 22 22 C 1.38260 * 120.10042 * 359.48730 * 21 20 19 23 23 C 1.38262 * 120.12119 * 0.26121 * 22 21 20 24 24 C 1.38332 * 120.03158 * 359.97438 * 23 22 21 25 25 F 1.35097 * 120.04435 * 180.02562 * 24 23 22 26 26 C 1.53035 * 109.54252 * 61.36098 * 12 11 10 27 27 H 1.09002 * 109.49782 * 58.58374 * 26 12 11 28 28 O 1.42900 * 109.50192 * 178.65583 * 26 12 11 29 29 C 1.46934 * 120.62783 * 27.67460 * 9 7 2 30 30 H 0.97000 * 120.00176 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.58482 * 353.37055 * 10 9 7 32 32 H 1.08994 * 109.58726 * 113.65514 * 10 9 7 33 33 H 1.08999 * 109.49774 * 185.41305 * 11 10 9 34 34 H 1.09010 * 109.49558 * 65.31543 * 11 10 9 35 35 H 0.96993 * 120.00124 * 95.07323 * 14 12 11 36 36 H 1.09004 * 109.46975 * 60.00263 * 17 15 14 37 37 H 1.09000 * 109.47109 * 299.99929 * 17 15 14 38 38 H 1.07994 * 120.01971 * 0.02562 * 20 19 18 39 39 H 1.08008 * 119.94839 * 179.77129 * 21 20 19 40 40 H 1.08000 * 119.94067 * 180.23275 * 22 21 20 41 41 H 1.08002 * 119.98291 * 179.97438 * 23 22 21 42 42 H 0.96699 * 114.00046 * 180.02562 * 28 26 12 43 43 H 1.08989 * 109.58552 * 6.62662 * 29 9 7 44 44 H 1.09000 * 109.69969 * 246.26551 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2234 0.2785 9 7 1.3725 -2.3609 -0.3548 10 6 1.8194 -3.6547 0.1792 11 6 2.0743 -4.6096 -0.9913 12 6 0.8186 -4.6890 -1.8625 13 1 0.9891 -5.3868 -2.6824 14 7 -0.3092 -5.1549 -1.0517 15 6 -0.5076 -6.4754 -0.8689 16 8 0.2472 -7.2780 -1.3760 17 6 -1.6680 -6.9548 -0.0354 18 8 -1.6651 -8.3831 0.0083 19 6 -2.6538 -8.9806 0.7252 20 6 -3.6096 -8.2085 1.3678 21 6 -4.6109 -8.8178 2.0998 22 6 -4.6674 -10.1967 2.1839 23 6 -3.7193 -10.9704 1.5403 24 6 -2.7119 -10.3659 0.8101 25 9 -1.7857 -11.1217 0.1808 26 6 0.5006 -3.3037 -2.4297 27 1 1.3493 -2.9457 -3.0127 28 8 -0.6537 -3.3849 -3.2681 29 6 0.2278 -2.3339 -1.2756 30 1 -0.4850 0.8400 0.0004 31 1 2.7402 -3.5176 0.7462 32 1 1.0481 -4.0678 0.8292 33 1 2.3135 -5.6010 -0.6066 34 1 2.9081 -4.2393 -1.5879 35 1 -0.9131 -4.5131 -0.6466 36 1 -2.6015 -6.6071 -0.4781 37 1 -1.5763 -6.5597 0.9764 38 1 -3.5697 -7.1315 1.2990 39 1 -5.3531 -8.2160 2.6034 40 1 -5.4532 -10.6703 2.7536 41 1 -3.7653 -12.0474 1.6078 42 1 -0.9132 -2.5412 -3.6630 43 1 0.0986 -1.3255 -1.6683 44 1 -0.6756 -2.6391 -0.7477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100112303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:06 Heat of formation + Delta-G solvation = -111.163832 kcal Electronic energy + Delta-G solvation = -29411.053423 eV Core-core repulsion = 25051.288817 eV Total energy + Delta-G solvation = -4359.764605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.89571 -40.51333 -39.64802 -38.10617 -37.25662 -35.35750 -34.16409 -32.16502 -31.00598 -30.67028 -29.82899 -29.04167 -27.89063 -25.35141 -23.29370 -22.73481 -22.39223 -21.86911 -20.76573 -18.96393 -18.63646 -17.59351 -17.22317 -16.95143 -16.65898 -16.62147 -16.39948 -15.58782 -15.46171 -15.13766 -14.95553 -14.64445 -14.41843 -14.22746 -13.98348 -13.75599 -13.42833 -13.23109 -12.90028 -12.83088 -12.52125 -12.29888 -12.00175 -11.91381 -11.75424 -11.46986 -11.35696 -11.14163 -11.08297 -10.89816 -10.50008 -10.27024 -10.06767 -9.77825 -9.60372 -9.40352 -9.25546 -8.79130 -8.61617 -8.46794 -6.86479 -5.96130 -3.39328 0.82100 0.96038 2.44079 2.72400 3.27827 3.28092 3.36013 3.36689 3.61572 4.01742 4.33809 4.41337 4.48534 4.53716 4.71354 4.85980 4.90563 4.91615 4.94756 5.18105 5.19088 5.32933 5.38668 5.63263 5.65736 5.74221 5.75712 5.86437 5.86669 5.96191 6.06627 6.16352 6.31289 6.35101 6.39314 6.64415 6.71305 6.83956 6.97108 7.00745 7.32683 7.64818 7.71448 8.02361 8.27189 8.37742 9.02548 9.65168 10.20478 11.12036 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.002468 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.316683 B =11342.870283 C =11914.971854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.145 3.855 11 C -0.146 4.146 12 C 0.168 3.832 13 H 0.080 0.920 14 N -0.700 5.700 15 C 0.516 3.484 16 O -0.526 6.526 17 C 0.039 3.961 18 O -0.280 6.280 19 C 0.100 3.900 20 C -0.185 4.185 21 C -0.088 4.088 22 C -0.133 4.133 23 C -0.117 4.117 24 C 0.070 3.930 25 F -0.130 7.130 26 C 0.066 3.934 27 H 0.064 0.936 28 O -0.573 6.573 29 C 0.146 3.854 30 H 0.255 0.745 31 H 0.058 0.942 32 H 0.020 0.980 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.405 0.595 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.377 0.623 43 H 0.093 0.907 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.896 -14.449 2.152 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.019 3.981 11 C -0.186 4.186 12 C 0.064 3.936 13 H 0.099 0.901 14 N -0.353 5.353 15 C 0.300 3.700 16 O -0.402 6.402 17 C -0.039 4.039 18 O -0.192 6.192 19 C 0.053 3.947 20 C -0.203 4.203 21 C -0.107 4.107 22 C -0.151 4.151 23 C -0.136 4.136 24 C 0.050 3.950 25 F -0.109 7.109 26 C 0.006 3.994 27 H 0.081 0.919 28 O -0.378 6.378 29 C 0.019 3.981 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.242 0.758 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.159 0.841 42 H 0.224 0.776 43 H 0.111 0.889 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.205 -15.615 1.830 18.218 hybrid contribution 0.090 1.946 0.056 1.949 sum -9.115 -13.669 1.886 16.537 Atomic orbital electron populations 1.70007 1.05251 1.25743 1.53731 1.25053 0.95346 0.98547 1.00613 0.86257 0.79188 0.83374 0.77765 1.21369 1.21707 1.20341 1.19223 0.92919 0.84641 1.41648 0.91335 1.43978 1.35651 1.01763 1.49812 1.20921 0.97971 0.86339 0.92846 1.22419 0.96486 1.00414 0.99276 1.20849 0.85532 0.94584 0.92675 0.90145 1.45815 1.31091 1.05831 1.52594 1.19799 0.85595 0.83141 0.81494 1.90732 1.46644 1.54023 1.48841 1.22595 0.99557 0.79993 1.01797 1.86232 1.46117 1.20125 1.66762 1.19124 0.90011 0.91174 0.94348 1.21266 0.96589 1.00604 1.01882 1.21046 0.97462 0.94814 0.97329 1.20938 0.99435 0.93631 1.01083 1.21037 0.93892 1.01148 0.97553 1.17019 0.91686 0.85696 1.00573 1.91528 1.63909 1.75168 1.80257 1.22946 0.87875 0.95627 0.92981 0.91852 1.86409 1.48220 1.36753 1.66400 1.21401 0.89447 0.98708 0.88560 0.93497 0.92385 0.96256 0.91596 0.90933 0.75831 0.88718 0.88623 0.84187 0.84887 0.84849 0.84070 0.77649 0.88851 0.95789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.12 11.19 55.49 0.62 -23.50 16 2 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 20.49 29.59 -169.99 -5.03 15.46 16 4 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.25 -6.50 9.58 -15.06 -0.14 -6.64 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -13.36 2.99 -172.32 -0.52 -13.87 16 10 C 0.15 2.85 6.25 -3.71 -0.02 2.83 16 11 C -0.15 -2.54 5.77 -26.61 -0.15 -2.69 16 12 C 0.17 2.91 2.47 -67.89 -0.17 2.74 16 13 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 14 N -0.70 -11.10 4.16 -53.76 -0.22 -11.33 16 15 C 0.52 8.36 7.87 -10.98 -0.09 8.28 16 16 O -0.53 -10.64 16.16 -14.35 -0.23 -10.87 16 17 C 0.04 0.49 5.22 36.01 0.19 0.67 16 18 O -0.28 -4.19 9.54 -39.51 -0.38 -4.57 16 19 C 0.10 1.25 6.69 -39.18 -0.26 0.99 16 20 C -0.18 -1.75 9.04 -39.44 -0.36 -2.10 16 21 C -0.09 -0.68 10.04 -39.59 -0.40 -1.07 16 22 C -0.13 -0.97 10.04 -39.56 -0.40 -1.37 16 23 C -0.12 -1.05 10.02 -39.54 -0.40 -1.45 16 24 C 0.07 0.86 7.31 -39.30 -0.29 0.58 16 25 F -0.13 -1.88 17.11 2.25 0.04 -1.84 16 26 C 0.07 1.18 3.36 -26.61 -0.09 1.09 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 O -0.57 -9.27 13.21 -35.23 -0.47 -9.74 16 29 C 0.15 3.04 4.64 -3.70 -0.02 3.02 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 32 H 0.02 0.38 7.74 -51.93 -0.40 -0.02 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 35 H 0.41 6.11 6.87 -40.82 -0.28 5.83 16 36 H 0.09 0.93 7.65 -51.93 -0.40 0.53 16 37 H 0.10 0.96 7.67 -51.93 -0.40 0.56 16 38 H 0.14 1.06 6.30 -52.49 -0.33 0.73 16 39 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.38 4.83 9.08 45.56 0.41 5.24 16 43 H 0.09 2.20 6.04 -51.94 -0.31 1.89 16 44 H 0.02 0.52 6.64 -51.93 -0.35 0.17 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -32.22 366.80 -8.28 -40.50 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -4.94 Total: 9.37 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -2.68 Total: 4.86 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.12 Total: -48.70 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -1.07 Total: -25.18 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.22 -8.28 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100112303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.663 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds