Wall clock time and date at job start Tue Mar 31 2020 20:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99906 * 2 1 4 4 H 1.48499 * 109.47237 * 270.00664 * 3 2 1 5 5 H 1.48507 * 109.46840 * 30.00208 * 3 2 1 6 6 H 1.48502 * 109.47259 * 149.99835 * 3 2 1 7 7 C 1.38816 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99696 * 197.35709 * 7 2 1 9 9 N 1.36930 * 120.00019 * 17.35348 * 7 2 1 10 10 C 1.46929 * 120.63120 * 207.70099 * 9 7 2 11 11 C 1.53191 * 108.77370 * 233.58437 * 10 9 7 12 12 C 1.53040 * 109.31588 * 305.36777 * 11 10 9 13 13 H 1.09002 * 109.45359 * 181.38296 * 12 11 10 14 14 N 1.46506 * 109.45529 * 301.34476 * 12 11 10 15 15 C 1.34774 * 119.99759 * 275.06756 * 14 12 11 16 16 O 1.21282 * 120.00289 * 359.97438 * 15 14 12 17 17 C 1.50706 * 119.99971 * 180.02562 * 15 14 12 18 18 O 1.42903 * 109.47024 * 179.97438 * 17 15 14 19 19 C 1.35955 * 116.99761 * 179.97438 * 18 17 15 20 20 C 1.38663 * 120.06159 * 0.28138 * 19 18 17 21 21 C 1.38183 * 119.96365 * 180.22932 * 20 19 18 22 22 C 1.38260 * 120.10042 * 359.48730 * 21 20 19 23 23 C 1.38262 * 120.12119 * 0.26121 * 22 21 20 24 24 C 1.38332 * 120.03158 * 359.97438 * 23 22 21 25 25 F 1.35097 * 120.04435 * 180.02562 * 24 23 22 26 26 C 1.53035 * 109.54252 * 61.36098 * 12 11 10 27 27 H 1.09002 * 109.49782 * 58.58374 * 26 12 11 28 28 O 1.42900 * 109.50192 * 178.65583 * 26 12 11 29 29 C 1.46934 * 120.62783 * 27.67460 * 9 7 2 30 30 H 0.97000 * 120.00176 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.58482 * 353.37055 * 10 9 7 32 32 H 1.08994 * 109.58726 * 113.65514 * 10 9 7 33 33 H 1.08999 * 109.49774 * 185.41305 * 11 10 9 34 34 H 1.09010 * 109.49558 * 65.31543 * 11 10 9 35 35 H 0.96993 * 120.00124 * 95.07323 * 14 12 11 36 36 H 1.09004 * 109.46975 * 60.00263 * 17 15 14 37 37 H 1.09000 * 109.47109 * 299.99929 * 17 15 14 38 38 H 1.07994 * 120.01971 * 0.02562 * 20 19 18 39 39 H 1.08008 * 119.94839 * 179.77129 * 21 20 19 40 40 H 1.08000 * 119.94067 * 180.23275 * 22 21 20 41 41 H 1.08002 * 119.98291 * 179.97438 * 23 22 21 42 42 H 0.96699 * 114.00046 * 180.02562 * 28 26 12 43 43 H 1.08989 * 109.58552 * 6.62662 * 29 9 7 44 44 H 1.09000 * 109.69969 * 246.26551 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2234 0.2785 9 7 1.3725 -2.3609 -0.3548 10 6 1.8194 -3.6547 0.1792 11 6 2.0743 -4.6096 -0.9913 12 6 0.8186 -4.6890 -1.8625 13 1 0.9891 -5.3868 -2.6824 14 7 -0.3092 -5.1549 -1.0517 15 6 -0.5076 -6.4754 -0.8689 16 8 0.2472 -7.2780 -1.3760 17 6 -1.6680 -6.9548 -0.0354 18 8 -1.6651 -8.3831 0.0083 19 6 -2.6538 -8.9806 0.7252 20 6 -3.6096 -8.2085 1.3678 21 6 -4.6109 -8.8178 2.0998 22 6 -4.6674 -10.1967 2.1839 23 6 -3.7193 -10.9704 1.5403 24 6 -2.7119 -10.3659 0.8101 25 9 -1.7857 -11.1217 0.1808 26 6 0.5006 -3.3037 -2.4297 27 1 1.3493 -2.9457 -3.0127 28 8 -0.6537 -3.3849 -3.2681 29 6 0.2278 -2.3339 -1.2756 30 1 -0.4850 0.8400 0.0004 31 1 2.7402 -3.5176 0.7462 32 1 1.0481 -4.0678 0.8292 33 1 2.3135 -5.6010 -0.6066 34 1 2.9081 -4.2393 -1.5879 35 1 -0.9131 -4.5131 -0.6466 36 1 -2.6015 -6.6071 -0.4781 37 1 -1.5763 -6.5597 0.9764 38 1 -3.5697 -7.1315 1.2990 39 1 -5.3531 -8.2160 2.6034 40 1 -5.4532 -10.6703 2.7536 41 1 -3.7653 -12.0474 1.6078 42 1 -0.9132 -2.5412 -3.6630 43 1 0.0986 -1.3255 -1.6683 44 1 -0.6756 -2.6391 -0.7477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100112303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:05 Heat of formation + Delta-G solvation = -133.268188 kcal Electronic energy + Delta-G solvation = -29412.011939 eV Core-core repulsion = 25051.288817 eV Total energy + Delta-G solvation = -4360.723122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.84314 -41.59208 -40.79104 -39.38035 -38.23619 -36.86107 -35.71418 -33.81075 -31.92260 -31.64881 -31.06684 -30.53076 -28.99096 -27.09889 -24.30531 -23.84405 -23.51592 -23.38607 -22.01693 -20.35947 -19.61465 -18.97072 -18.38672 -18.09543 -18.06379 -17.62440 -17.42095 -16.83742 -16.71698 -16.51514 -15.90470 -15.79824 -15.70177 -15.45729 -15.35691 -15.18928 -14.92202 -14.41131 -14.15469 -13.89635 -13.70924 -13.54450 -13.34545 -13.23411 -12.87351 -12.71204 -12.68054 -12.66080 -12.21592 -12.16713 -12.13414 -11.98885 -11.83126 -11.29398 -11.03647 -10.88489 -10.58060 -10.12548 -9.94732 -9.26408 -8.71114 -7.89930 -5.34752 0.12745 0.25048 1.43486 1.46859 1.48246 1.51412 1.58259 2.49487 2.54799 2.60769 3.11848 3.25000 3.26833 3.50870 3.65291 3.79950 3.86772 3.93682 4.01479 4.03909 4.12690 4.25448 4.28382 4.34160 4.35713 4.45135 4.50834 4.69195 4.86264 4.93797 4.97930 5.07484 5.09457 5.15854 5.26438 5.30804 5.43193 5.45344 5.59720 5.66400 5.66772 6.17364 6.35284 6.45411 6.82822 7.10936 7.13188 7.80298 8.31528 9.15563 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.002468 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.316683 B =11342.870283 C =11914.971854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.041 4.041 3 Si 0.962 3.038 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.264 4.264 8 H 0.065 0.935 9 N -0.602 5.602 10 C 0.147 3.853 11 C -0.133 4.133 12 C 0.169 3.831 13 H 0.072 0.928 14 N -0.694 5.694 15 C 0.514 3.486 16 O -0.572 6.572 17 C 0.044 3.956 18 O -0.317 6.317 19 C 0.072 3.928 20 C -0.186 4.186 21 C -0.082 4.082 22 C -0.123 4.123 23 C -0.116 4.116 24 C 0.030 3.970 25 F -0.155 7.155 26 C 0.085 3.915 27 H 0.062 0.938 28 O -0.573 6.573 29 C 0.157 3.843 30 H 0.252 0.748 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.411 0.589 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.160 0.840 42 H 0.392 0.608 43 H 0.066 0.934 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.646 -14.520 3.218 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.237 4.237 3 Si 0.790 3.210 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.394 4.394 8 H 0.083 0.917 9 N -0.327 5.327 10 C 0.022 3.978 11 C -0.173 4.173 12 C 0.065 3.935 13 H 0.090 0.910 14 N -0.347 5.347 15 C 0.300 3.700 16 O -0.451 6.451 17 C -0.034 4.034 18 O -0.231 6.231 19 C 0.026 3.974 20 C -0.205 4.205 21 C -0.100 4.100 22 C -0.141 4.141 23 C -0.134 4.134 24 C 0.010 3.990 25 F -0.134 7.134 26 C 0.024 3.976 27 H 0.080 0.920 28 O -0.380 6.380 29 C 0.030 3.970 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.248 0.752 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.176 0.824 39 H 0.184 0.816 40 H 0.187 0.813 41 H 0.178 0.822 42 H 0.242 0.758 43 H 0.084 0.916 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -10.972 -15.682 2.898 19.358 hybrid contribution 0.545 1.923 -0.222 2.011 sum -10.426 -13.759 2.676 17.470 Atomic orbital electron populations 1.70119 1.06207 1.25962 1.54874 1.25660 0.96052 1.01003 1.01015 0.85359 0.78112 0.79978 0.77504 1.21233 1.22251 1.19864 1.19457 0.93037 0.85842 1.41106 0.91693 1.44165 1.35895 1.02075 1.50539 1.20963 0.97810 0.85462 0.93582 1.22268 0.96750 0.99852 0.98459 1.20732 0.86068 0.94048 0.92691 0.90961 1.45744 1.30669 1.06092 1.52171 1.20469 0.86003 0.82558 0.80980 1.90708 1.48553 1.55034 1.50822 1.22642 0.98691 0.79529 1.02489 1.86157 1.47773 1.21096 1.68034 1.19424 0.90788 0.91476 0.95730 1.21554 0.96115 1.01410 1.01392 1.21517 0.97066 0.95383 0.96065 1.21415 0.99156 0.93663 0.99843 1.21360 0.93061 1.02430 0.96590 1.17598 0.92843 0.86046 1.02484 1.91452 1.65084 1.75747 1.81069 1.22590 0.88288 0.94822 0.91944 0.92023 1.86389 1.47512 1.38106 1.65988 1.21226 0.88730 0.97948 0.89064 0.93910 0.92604 0.95953 0.91277 0.90607 0.75175 0.85854 0.86060 0.82395 0.81594 0.81321 0.82204 0.75819 0.91551 0.96425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.56 11.19 21.65 0.24 -49.32 16 2 C -0.04 -2.11 4.91 84.86 0.42 -1.69 16 3 Si 0.96 42.01 29.59 68.60 2.03 44.04 16 4 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.30 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.26 -13.43 9.58 84.04 0.81 -12.62 16 8 H 0.07 3.28 7.89 -2.91 -0.02 3.26 16 9 N -0.60 -27.21 2.99 -699.09 -2.09 -29.30 16 10 C 0.15 5.69 6.25 86.36 0.54 6.23 16 11 C -0.13 -4.57 5.77 30.67 0.18 -4.39 16 12 C 0.17 5.78 2.47 45.02 0.11 5.89 16 13 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 14 N -0.69 -21.48 4.16 -442.40 -1.84 -23.32 16 15 C 0.51 16.51 7.87 87.66 0.69 17.20 16 16 O -0.57 -23.56 16.16 16.00 0.26 -23.30 16 17 C 0.04 1.05 5.22 71.24 0.37 1.42 16 18 O -0.32 -9.60 9.54 -74.00 -0.71 -10.31 16 19 C 0.07 1.77 6.69 22.53 0.15 1.92 16 20 C -0.19 -3.09 9.04 22.36 0.20 -2.89 16 21 C -0.08 -0.95 10.04 22.26 0.22 -0.73 16 22 C -0.12 -1.37 10.04 22.28 0.22 -1.14 16 23 C -0.12 -1.89 10.02 22.30 0.22 -1.67 16 24 C 0.03 0.74 7.31 22.45 0.16 0.91 16 25 F -0.15 -4.74 17.11 44.97 0.77 -3.97 16 26 C 0.08 2.93 3.36 30.67 0.10 3.04 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 O -0.57 -17.83 13.21 -148.98 -1.97 -19.80 16 29 C 0.16 6.51 4.64 86.36 0.40 6.91 16 30 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 31 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16 32 H 0.02 0.86 7.74 -2.39 -0.02 0.84 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.41 11.90 6.87 -92.71 -0.64 11.26 16 36 H 0.12 2.16 7.65 -2.39 -0.02 2.15 16 37 H 0.12 2.20 7.67 -2.39 -0.02 2.18 16 38 H 0.16 1.91 6.30 -2.91 -0.02 1.89 16 39 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 41 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.39 9.53 9.08 -74.06 -0.67 8.86 16 43 H 0.07 3.14 6.04 -2.39 -0.01 3.13 16 44 H 0.02 0.76 6.64 -2.39 -0.02 0.74 16 Total: -1.00 -71.30 366.80 1.24 -70.05 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -0.25 Total: 26.85 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 4.80 Total: 18.38 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -3.69 Total: -101.94 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -2.42 Total: -53.41 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.77 Total: -3.97 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -71.30 1.24 -70.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100112303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.216 kcal (2) G-P(sol) polarization free energy of solvation -71.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds