Wall clock time and date at job start Tue Mar 31 2020 20:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48504 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47041 * 299.99656 * 3 2 1 6 6 H 1.48497 * 109.47258 * 59.99785 * 3 2 1 7 7 C 1.38815 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99853 * 163.17555 * 7 2 1 9 9 N 1.36933 * 119.99826 * 343.17890 * 7 2 1 10 10 C 1.46923 * 120.63142 * 331.58665 * 9 7 2 11 11 C 1.53197 * 108.77587 * 233.88375 * 10 9 7 12 12 C 1.53031 * 109.31337 * 305.36720 * 11 10 9 13 13 H 1.09007 * 109.45825 * 301.34055 * 12 11 10 14 14 N 1.46501 * 109.46301 * 181.38424 * 12 11 10 15 15 C 1.34776 * 120.00200 * 84.92562 * 14 12 11 16 16 O 1.21290 * 119.99694 * 0.02562 * 15 14 12 17 17 C 1.50696 * 120.00333 * 180.02562 * 15 14 12 18 18 O 1.42899 * 109.47335 * 180.02562 * 17 15 14 19 19 C 1.35959 * 117.00298 * 180.02562 * 18 17 15 20 20 C 1.38663 * 120.06116 * 359.97438 * 19 18 17 21 21 C 1.38175 * 119.96915 * 179.97438 * 20 19 18 22 22 C 1.38254 * 120.09687 * 0.02562 * 21 20 19 23 23 C 1.38255 * 120.12703 * 0.02562 * 22 21 20 24 24 C 1.38335 * 120.02991 * 359.69850 * 23 22 21 25 25 F 1.35098 * 120.05337 * 180.27862 * 24 23 22 26 26 C 1.53033 * 109.54059 * 61.36357 * 12 11 10 27 27 H 1.09001 * 109.52989 * 58.60171 * 26 12 11 28 28 O 1.42902 * 109.50226 * 178.68358 * 26 12 11 29 29 C 1.46930 * 120.63005 * 151.86766 * 9 7 2 30 30 H 0.97002 * 120.00123 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.59186 * 353.67075 * 10 9 7 32 32 H 1.08997 * 109.58930 * 114.09788 * 10 9 7 33 33 H 1.08998 * 109.49661 * 185.40909 * 11 10 9 34 34 H 1.09004 * 109.49379 * 65.31918 * 11 10 9 35 35 H 0.97001 * 120.00354 * 264.93584 * 14 12 11 36 36 H 1.08994 * 109.47360 * 300.00251 * 17 15 14 37 37 H 1.09004 * 109.47091 * 60.00728 * 17 15 14 38 38 H 1.08006 * 120.01097 * 359.95740 * 20 19 18 39 39 H 1.08008 * 119.95053 * 180.02562 * 21 20 19 40 40 H 1.08005 * 119.93486 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.98878 * 180.02562 * 23 22 21 42 42 H 0.96699 * 114.00402 * 179.83547 * 28 26 12 43 43 H 1.08998 * 109.58579 * 245.89878 * 29 9 7 44 44 H 1.09002 * 109.58437 * 6.18832 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0556 -1.2223 -0.2702 9 7 1.3695 -2.3625 0.3442 10 6 0.2276 -2.3416 1.2685 11 6 0.5037 -3.3189 2.4155 12 6 0.8198 -4.7005 1.8382 13 1 -0.0211 -5.0431 1.2352 14 7 1.0520 -5.6456 2.9332 15 6 0.0098 -6.2692 3.5176 16 8 -1.1203 -6.0481 3.1365 17 6 0.2485 -7.2409 4.6443 18 8 -1.0023 -7.7667 5.0930 19 6 -0.9642 -8.6644 6.1134 20 6 0.2514 -9.0316 6.6704 21 6 0.2878 -9.9437 7.7077 22 6 -0.8861 -10.4913 8.1910 23 6 -2.1002 -10.1288 7.6378 24 6 -2.1432 -9.2119 6.6029 25 9 -3.3298 -8.8531 6.0658 26 6 2.0730 -4.6154 0.9640 27 1 2.9090 -4.2495 1.5601 28 8 2.3851 -5.9118 0.4501 29 6 1.8147 -3.6528 -0.1995 30 1 -0.4850 0.8401 -0.0004 31 1 0.0995 -1.3357 1.6685 32 1 -0.6761 -2.6446 0.7398 33 1 -0.3752 -3.3849 3.0567 34 1 1.3541 -2.9649 2.9984 35 1 1.9557 -5.8226 3.2379 36 1 0.8800 -8.0568 4.2929 37 1 0.7436 -6.7272 5.4685 38 1 1.1692 -8.6051 6.2934 39 1 1.2348 -10.2292 8.1417 40 1 -0.8545 -11.2044 9.0016 41 1 -3.0158 -10.5577 8.0173 42 1 3.1686 -5.9323 -0.1163 43 1 1.0404 -4.0628 -0.8479 44 1 2.7325 -3.5117 -0.7704 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100112307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:15 Heat of formation + Delta-G solvation = -111.987739 kcal Electronic energy + Delta-G solvation = -28891.133260 eV Core-core repulsion = 24531.332927 eV Total energy + Delta-G solvation = -4359.800332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -48.94808 -40.58140 -39.60074 -38.15890 -37.37609 -35.45659 -34.39033 -32.10004 -31.09778 -30.80042 -30.07294 -28.87547 -27.93234 -25.09356 -23.31862 -22.81056 -22.42567 -21.85301 -20.39063 -19.55489 -18.87002 -17.63304 -17.31955 -17.04797 -16.72838 -16.60022 -16.36110 -15.91108 -15.58298 -15.24784 -14.90187 -14.72796 -14.38328 -14.22570 -13.95680 -13.76589 -13.33143 -13.21375 -12.96799 -12.84573 -12.63300 -12.32284 -12.10576 -12.07804 -11.62148 -11.55673 -11.45542 -11.14451 -10.92263 -10.71938 -10.37549 -10.29102 -9.99898 -9.87418 -9.77560 -9.47863 -9.34001 -8.85497 -8.55277 -8.50354 -6.80373 -5.87973 -3.33009 0.73731 0.87670 2.33966 2.63860 3.19615 3.31695 3.39510 3.41511 3.49218 3.93756 4.28527 4.33763 4.40172 4.47127 4.59000 4.72869 4.77180 4.82431 4.84306 5.10107 5.23316 5.29106 5.43660 5.48782 5.56624 5.65486 5.71570 5.78083 5.91121 5.97550 6.05162 6.22490 6.24343 6.43297 6.45756 6.62058 6.72843 6.76169 6.92258 7.24859 7.55638 7.59685 7.70044 7.85686 8.28996 8.34535 9.09731 9.71998 10.27909 11.20646 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022622 B = 0.002142 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.449380 B =13065.963969 C =13489.122120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C 0.165 3.835 13 H 0.089 0.911 14 N -0.712 5.712 15 C 0.512 3.488 16 O -0.514 6.514 17 C 0.041 3.959 18 O -0.280 6.280 19 C 0.100 3.900 20 C -0.186 4.186 21 C -0.089 4.089 22 C -0.132 4.132 23 C -0.117 4.117 24 C 0.072 3.928 25 F -0.128 7.128 26 C 0.080 3.920 27 H 0.057 0.943 28 O -0.572 6.572 29 C 0.121 3.879 30 H 0.256 0.744 31 H 0.094 0.906 32 H 0.025 0.975 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.397 0.603 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.374 0.626 43 H 0.030 0.970 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 -20.325 15.479 25.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.188 4.188 12 C 0.061 3.939 13 H 0.108 0.892 14 N -0.363 5.363 15 C 0.296 3.704 16 O -0.389 6.389 17 C -0.038 4.038 18 O -0.191 6.191 19 C 0.053 3.947 20 C -0.204 4.204 21 C -0.108 4.108 22 C -0.150 4.150 23 C -0.136 4.136 24 C 0.052 3.948 25 F -0.107 7.107 26 C 0.019 3.981 27 H 0.075 0.925 28 O -0.376 6.376 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.230 0.770 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.160 0.840 42 H 0.221 0.779 43 H 0.047 0.953 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.076 -20.072 15.378 25.472 hybrid contribution 1.419 0.999 -0.218 1.749 sum 4.494 -19.073 15.160 24.775 Atomic orbital electron populations 1.70041 1.05305 1.25708 1.53073 1.25102 0.95317 0.98591 1.00416 0.86204 0.79273 0.83755 0.77381 1.20223 1.21612 1.21441 1.19185 0.92514 0.84539 1.42724 0.91495 1.44043 1.35982 1.01195 1.49979 1.20839 0.88798 0.98306 0.87609 1.22623 1.01108 0.94211 1.00847 1.21057 0.97777 0.88982 0.86058 0.89244 1.45927 1.08741 1.44713 1.36951 1.19839 0.85816 0.81410 0.83335 1.90788 1.22244 1.62992 1.62859 1.22590 0.85921 0.97778 0.97523 1.86258 1.30649 1.54997 1.47241 1.19132 0.93506 0.92030 0.90060 1.21216 0.96249 1.02595 1.00388 1.21024 0.98859 0.95491 0.95397 1.20940 0.91395 1.01518 1.01171 1.21058 1.00144 0.97007 0.95345 1.17041 0.79426 1.00621 0.97701 1.91543 1.43411 1.90681 1.85066 1.22783 0.95874 0.83237 0.96167 0.92493 1.86475 1.51066 1.30421 1.69655 1.21530 0.98886 0.87417 0.92886 0.93423 0.88807 0.95693 0.91833 0.92246 0.76963 0.88825 0.88850 0.84351 0.84947 0.84818 0.83987 0.77905 0.95252 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 11.20 55.49 0.62 -25.07 16 2 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 3 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.26 -6.86 9.58 -15.06 -0.14 -7.00 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.17 2.99 -172.31 -0.52 -14.68 16 10 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 11 C -0.15 -2.85 5.65 -26.61 -0.15 -3.00 16 12 C 0.16 2.88 2.12 -67.90 -0.14 2.74 16 13 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 14 N -0.71 -9.93 4.92 -53.77 -0.26 -10.20 16 15 C 0.51 7.84 7.87 -10.99 -0.09 7.75 16 16 O -0.51 -10.58 16.16 -14.36 -0.23 -10.81 16 17 C 0.04 0.44 5.22 36.00 0.19 0.63 16 18 O -0.28 -3.95 9.53 -39.52 -0.38 -4.33 16 19 C 0.10 1.15 6.69 -39.18 -0.26 0.89 16 20 C -0.19 -1.50 9.04 -39.45 -0.36 -1.86 16 21 C -0.09 -0.57 10.04 -39.60 -0.40 -0.97 16 22 C -0.13 -0.85 10.04 -39.57 -0.40 -1.25 16 23 C -0.12 -0.97 10.02 -39.54 -0.40 -1.36 16 24 C 0.07 0.84 7.31 -39.30 -0.29 0.56 16 25 F -0.13 -1.82 17.11 2.25 0.04 -1.78 16 26 C 0.08 1.31 3.14 -26.61 -0.08 1.22 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 O -0.57 -8.07 13.16 -35.23 -0.46 -8.54 16 29 C 0.12 2.39 6.14 -3.71 -0.02 2.37 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 32 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.40 4.17 8.60 -40.82 -0.35 3.82 16 36 H 0.09 0.74 7.66 -51.93 -0.40 0.34 16 37 H 0.09 0.72 7.66 -51.93 -0.40 0.33 16 38 H 0.14 0.79 6.30 -52.48 -0.33 0.45 16 39 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 40 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.37 3.71 9.08 45.56 0.41 4.12 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -34.84 371.04 -8.39 -43.23 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.11 Total: 5.73 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -2.65 Total: 4.80 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.16 Total: -49.95 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -1.07 Total: -23.68 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.84 -8.39 -43.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100112307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.756 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds