Wall clock time and date at job start Tue Mar 31 2020 20:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48504 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47041 * 299.99656 * 3 2 1 6 6 H 1.48497 * 109.47258 * 59.99785 * 3 2 1 7 7 C 1.38815 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99853 * 163.17555 * 7 2 1 9 9 N 1.36933 * 119.99826 * 343.17890 * 7 2 1 10 10 C 1.46923 * 120.63142 * 331.58665 * 9 7 2 11 11 C 1.53197 * 108.77587 * 233.88375 * 10 9 7 12 12 C 1.53031 * 109.31337 * 305.36720 * 11 10 9 13 13 H 1.09007 * 109.45825 * 301.34055 * 12 11 10 14 14 N 1.46501 * 109.46301 * 181.38424 * 12 11 10 15 15 C 1.34776 * 120.00200 * 84.92562 * 14 12 11 16 16 O 1.21290 * 119.99694 * 0.02562 * 15 14 12 17 17 C 1.50696 * 120.00333 * 180.02562 * 15 14 12 18 18 O 1.42899 * 109.47335 * 180.02562 * 17 15 14 19 19 C 1.35959 * 117.00298 * 180.02562 * 18 17 15 20 20 C 1.38663 * 120.06116 * 359.97438 * 19 18 17 21 21 C 1.38175 * 119.96915 * 179.97438 * 20 19 18 22 22 C 1.38254 * 120.09687 * 0.02562 * 21 20 19 23 23 C 1.38255 * 120.12703 * 0.02562 * 22 21 20 24 24 C 1.38335 * 120.02991 * 359.69850 * 23 22 21 25 25 F 1.35098 * 120.05337 * 180.27862 * 24 23 22 26 26 C 1.53033 * 109.54059 * 61.36357 * 12 11 10 27 27 H 1.09001 * 109.52989 * 58.60171 * 26 12 11 28 28 O 1.42902 * 109.50226 * 178.68358 * 26 12 11 29 29 C 1.46930 * 120.63005 * 151.86766 * 9 7 2 30 30 H 0.97002 * 120.00123 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.59186 * 353.67075 * 10 9 7 32 32 H 1.08997 * 109.58930 * 114.09788 * 10 9 7 33 33 H 1.08998 * 109.49661 * 185.40909 * 11 10 9 34 34 H 1.09004 * 109.49379 * 65.31918 * 11 10 9 35 35 H 0.97001 * 120.00354 * 264.93584 * 14 12 11 36 36 H 1.08994 * 109.47360 * 300.00251 * 17 15 14 37 37 H 1.09004 * 109.47091 * 60.00728 * 17 15 14 38 38 H 1.08006 * 120.01097 * 359.95740 * 20 19 18 39 39 H 1.08008 * 119.95053 * 180.02562 * 21 20 19 40 40 H 1.08005 * 119.93486 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.98878 * 180.02562 * 23 22 21 42 42 H 0.96699 * 114.00402 * 179.83547 * 28 26 12 43 43 H 1.08998 * 109.58579 * 245.89878 * 29 9 7 44 44 H 1.09002 * 109.58437 * 6.18832 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0556 -1.2223 -0.2702 9 7 1.3695 -2.3625 0.3442 10 6 0.2276 -2.3416 1.2685 11 6 0.5037 -3.3189 2.4155 12 6 0.8198 -4.7005 1.8382 13 1 -0.0211 -5.0431 1.2352 14 7 1.0520 -5.6456 2.9332 15 6 0.0098 -6.2692 3.5176 16 8 -1.1203 -6.0481 3.1365 17 6 0.2485 -7.2409 4.6443 18 8 -1.0023 -7.7667 5.0930 19 6 -0.9642 -8.6644 6.1134 20 6 0.2514 -9.0316 6.6704 21 6 0.2878 -9.9437 7.7077 22 6 -0.8861 -10.4913 8.1910 23 6 -2.1002 -10.1288 7.6378 24 6 -2.1432 -9.2119 6.6029 25 9 -3.3298 -8.8531 6.0658 26 6 2.0730 -4.6154 0.9640 27 1 2.9090 -4.2495 1.5601 28 8 2.3851 -5.9118 0.4501 29 6 1.8147 -3.6528 -0.1995 30 1 -0.4850 0.8401 -0.0004 31 1 0.0995 -1.3357 1.6685 32 1 -0.6761 -2.6446 0.7398 33 1 -0.3752 -3.3849 3.0567 34 1 1.3541 -2.9649 2.9984 35 1 1.9557 -5.8226 3.2379 36 1 0.8800 -8.0568 4.2929 37 1 0.7436 -6.7272 5.4685 38 1 1.1692 -8.6051 6.2934 39 1 1.2348 -10.2292 8.1417 40 1 -0.8545 -11.2044 9.0016 41 1 -3.0158 -10.5577 8.0173 42 1 3.1686 -5.9323 -0.1163 43 1 1.0404 -4.0628 -0.8479 44 1 2.7325 -3.5117 -0.7704 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100112307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:14 Heat of formation + Delta-G solvation = -138.326919 kcal Electronic energy + Delta-G solvation = -28892.275412 eV Core-core repulsion = 24531.332927 eV Total energy + Delta-G solvation = -4360.942485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.84762 -41.53623 -40.70637 -39.43322 -38.25706 -36.98444 -35.82300 -33.86842 -32.13739 -31.66040 -31.19428 -30.31493 -29.05608 -26.85221 -24.34201 -23.88670 -23.54385 -23.26578 -21.64923 -21.13331 -19.63777 -19.03386 -18.36961 -18.06589 -17.98803 -17.59443 -17.35412 -17.23793 -16.72677 -16.53314 -15.92261 -15.71386 -15.63322 -15.46844 -15.36001 -15.07493 -14.92935 -14.49476 -14.14140 -13.89814 -13.69899 -13.67284 -13.31980 -13.25523 -12.98236 -12.76924 -12.66672 -12.40253 -12.18781 -12.14487 -12.10722 -12.05688 -11.89998 -11.41978 -11.11210 -10.92420 -10.59696 -10.13082 -9.93881 -9.25680 -8.77960 -7.91434 -5.39824 0.13512 0.25925 1.41979 1.46848 1.47875 1.49235 1.59889 2.48303 2.51736 2.61722 3.10364 3.25437 3.27053 3.50861 3.60715 3.80682 3.84471 3.91817 4.01481 4.02377 4.08815 4.21350 4.29349 4.35015 4.37692 4.50604 4.51666 4.66097 4.81727 4.91932 4.98831 5.00285 5.10089 5.11226 5.27188 5.34375 5.39287 5.43750 5.58686 5.64246 5.67662 6.19598 6.32716 6.49345 6.89140 7.08097 7.17307 7.76387 8.29393 9.16202 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022622 B = 0.002142 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.449380 B =13065.963969 C =13489.122120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.972 3.028 4 H -0.258 1.258 5 H -0.296 1.296 6 H -0.292 1.292 7 C -0.263 4.263 8 H 0.080 0.920 9 N -0.603 5.603 10 C 0.179 3.821 11 C -0.129 4.129 12 C 0.170 3.830 13 H 0.051 0.949 14 N -0.693 5.693 15 C 0.506 3.494 16 O -0.579 6.579 17 C 0.047 3.953 18 O -0.324 6.324 19 C 0.072 3.928 20 C -0.182 4.182 21 C -0.081 4.081 22 C -0.124 4.124 23 C -0.118 4.118 24 C 0.025 3.975 25 F -0.158 7.158 26 C 0.105 3.895 27 H 0.081 0.919 28 O -0.570 6.570 29 C 0.116 3.884 30 H 0.250 0.750 31 H 0.063 0.937 32 H -0.013 1.013 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.420 0.580 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.156 0.844 42 H 0.397 0.603 43 H 0.008 0.992 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.101 -22.539 17.814 30.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.800 3.200 4 H -0.182 1.182 5 H -0.223 1.223 6 H -0.219 1.219 7 C -0.392 4.392 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.052 3.948 11 C -0.170 4.170 12 C 0.065 3.935 13 H 0.069 0.931 14 N -0.346 5.346 15 C 0.293 3.707 16 O -0.458 6.458 17 C -0.030 4.030 18 O -0.237 6.237 19 C 0.026 3.974 20 C -0.200 4.200 21 C -0.099 4.099 22 C -0.142 4.142 23 C -0.137 4.137 24 C 0.005 3.995 25 F -0.137 7.137 26 C 0.044 3.956 27 H 0.099 0.901 28 O -0.378 6.378 29 C -0.011 4.011 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.006 0.994 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.258 0.742 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.185 0.815 39 H 0.188 0.812 40 H 0.186 0.814 41 H 0.174 0.826 42 H 0.248 0.752 43 H 0.026 0.974 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.494 -22.344 17.726 29.489 hybrid contribution 0.098 1.547 -0.945 1.815 sum 7.592 -20.797 16.781 27.781 Atomic orbital electron populations 1.70220 1.07047 1.25994 1.55161 1.25941 0.95993 1.02011 1.00970 0.85143 0.78904 0.79430 0.76551 1.18229 1.22306 1.21872 1.19613 0.93099 0.85316 1.41198 0.90259 1.44252 1.35675 1.02364 1.50492 1.20541 0.87855 0.97686 0.88690 1.22324 1.01320 0.94427 0.98898 1.20650 0.97438 0.88375 0.87005 0.93086 1.45601 1.09900 1.43447 1.35638 1.20762 0.84816 0.81378 0.83773 1.90768 1.24889 1.65152 1.64963 1.22695 0.85586 0.97960 0.96767 1.86180 1.32585 1.56286 1.48696 1.19435 0.94813 0.92675 0.90467 1.21585 0.95690 1.02477 1.00286 1.21539 1.00382 0.93837 0.94102 1.21419 0.90519 1.01135 1.01142 1.21347 1.01963 0.96062 0.94323 1.17692 0.78896 1.03067 0.99835 1.91453 1.45110 1.91294 1.85830 1.22281 0.95616 0.83281 0.94438 0.90092 1.86448 1.52677 1.28467 1.70208 1.21726 0.98725 0.86292 0.94363 0.94080 0.91884 0.99446 0.92832 0.90493 0.74227 0.85120 0.85071 0.81533 0.81198 0.81446 0.82617 0.75236 0.97362 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.02 11.20 21.65 0.24 -55.78 16 2 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 3 Si 0.97 43.72 29.59 68.60 2.03 45.75 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.26 -13.79 9.58 84.03 0.81 -12.99 16 8 H 0.08 3.91 7.88 -2.91 -0.02 3.89 16 9 N -0.60 -29.45 2.99 -699.08 -2.09 -31.55 16 10 C 0.18 8.92 5.31 86.36 0.46 9.38 16 11 C -0.13 -5.09 5.65 30.67 0.17 -4.92 16 12 C 0.17 5.93 2.12 45.01 0.10 6.03 16 13 H 0.05 2.20 7.58 -2.38 -0.02 2.18 16 14 N -0.69 -18.08 4.92 -442.42 -2.18 -20.26 16 15 C 0.51 15.25 7.87 87.66 0.69 15.94 16 16 O -0.58 -25.04 16.16 15.98 0.26 -24.78 16 17 C 0.05 0.92 5.22 71.23 0.37 1.29 16 18 O -0.32 -9.23 9.53 -74.05 -0.71 -9.93 16 19 C 0.07 1.62 6.69 22.53 0.15 1.77 16 20 C -0.18 -2.31 9.04 22.36 0.20 -2.11 16 21 C -0.08 -0.67 10.04 22.26 0.22 -0.44 16 22 C -0.12 -1.15 10.04 22.28 0.22 -0.92 16 23 C -0.12 -1.82 10.02 22.30 0.22 -1.60 16 24 C 0.02 0.59 7.31 22.45 0.16 0.76 16 25 F -0.16 -4.91 17.11 44.97 0.77 -4.14 16 26 C 0.10 3.18 3.14 30.67 0.10 3.28 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 O -0.57 -14.30 13.16 -148.98 -1.96 -16.27 16 29 C 0.12 4.51 6.14 86.36 0.53 5.04 16 30 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.06 3.52 6.06 -2.39 -0.01 3.50 16 32 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.42 7.14 8.60 -92.71 -0.80 6.35 16 36 H 0.13 1.53 7.66 -2.39 -0.02 1.51 16 37 H 0.13 1.52 7.66 -2.38 -0.02 1.50 16 38 H 0.17 1.02 6.30 -2.91 -0.02 1.00 16 39 H 0.17 0.17 8.06 -2.91 -0.02 0.15 16 40 H 0.17 0.41 8.06 -2.91 -0.02 0.38 16 41 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.40 6.25 9.08 -74.06 -0.67 5.57 16 43 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.08 2.77 7.93 -2.39 -0.02 2.75 16 Total: -1.00 -84.11 371.04 0.77 -83.34 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -0.42 Total: 15.64 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 4.83 Total: 17.98 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -4.02 Total: -107.58 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -2.41 Total: -50.98 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.77 Total: -4.14 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -84.11 0.77 -83.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100112307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.990 kcal (2) G-P(sol) polarization free energy of solvation -84.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds