Wall clock time and date at job start Tue Mar 31 2020 20:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48496 * 109.47117 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46804 * 120.00272 * 3 2 1 6 6 H 1.48500 * 109.47109 * 240.00094 * 3 2 1 7 7 C 1.38814 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00314 * 162.77229 * 7 2 1 9 9 N 1.36940 * 119.99741 * 342.76707 * 7 2 1 10 10 C 1.46926 * 120.62975 * 152.45397 * 9 7 2 11 11 C 1.53187 * 108.77629 * 126.36813 * 10 9 7 12 12 C 1.53044 * 109.31375 * 54.63309 * 11 10 9 13 13 H 1.09005 * 109.45674 * 58.65432 * 12 11 10 14 14 N 1.46495 * 109.46025 * 178.61038 * 12 11 10 15 15 C 1.34778 * 120.00737 * 275.00114 * 14 12 11 16 16 O 1.21282 * 119.99547 * 359.97438 * 15 14 12 17 17 C 1.50693 * 120.00268 * 180.02562 * 15 14 12 18 18 O 1.42899 * 109.46988 * 179.97438 * 17 15 14 19 19 C 1.35898 * 117.00132 * 179.97438 * 18 17 15 20 20 C 1.38772 * 120.04623 * 180.02562 * 19 18 17 21 21 C 1.38128 * 119.99654 * 179.97438 * 20 19 18 22 22 C 1.38255 * 120.08154 * 359.97438 * 21 20 19 23 23 C 1.38471 * 120.08504 * 359.97438 * 22 21 20 24 24 F 1.35093 * 120.00005 * 180.02562 * 23 22 21 25 25 C 1.38392 * 120.00624 * 359.78789 * 23 22 21 26 26 C 1.53033 * 109.54034 * 298.63686 * 12 11 10 27 27 H 1.08992 * 109.50166 * 181.31705 * 26 12 11 28 28 O 1.42899 * 109.49543 * 301.38114 * 26 12 11 29 29 C 1.46930 * 120.63112 * 332.17432 * 9 7 2 30 30 H 0.96998 * 120.00327 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58548 * 246.15278 * 10 9 7 32 32 H 1.08993 * 109.58790 * 6.43652 * 10 9 7 33 33 H 1.09003 * 109.50190 * 174.58311 * 11 10 9 34 34 H 1.08997 * 109.49784 * 294.68541 * 11 10 9 35 35 H 0.97004 * 119.99659 * 95.00697 * 14 12 11 36 36 H 1.08998 * 109.47465 * 299.99931 * 17 15 14 37 37 H 1.09005 * 109.47302 * 60.00267 * 17 15 14 38 38 H 1.08003 * 119.99814 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.95980 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.95818 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.04267 * 180.25056 * 25 23 22 42 42 H 0.96703 * 114.00374 * 179.97438 * 28 26 12 43 43 H 1.08997 * 109.58242 * 353.41759 * 29 9 7 44 44 H 1.08994 * 109.58811 * 113.84402 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2775 9 7 1.3717 -2.3616 0.3503 10 6 1.8215 -3.6548 -0.1827 11 6 2.0734 -4.6099 0.9882 12 6 0.8147 -4.6909 1.8551 13 1 -0.0220 -5.0381 1.2488 14 7 1.0408 -5.6291 2.9573 15 6 0.8409 -6.9488 2.7708 16 8 0.4733 -7.3597 1.6905 17 6 1.0729 -7.9138 3.9048 18 8 0.7951 -9.2439 3.4627 19 6 0.9566 -10.2422 4.3706 20 6 0.7049 -11.5580 4.0086 21 6 0.8699 -12.5719 4.9320 22 6 1.2863 -12.2778 6.2172 23 6 1.5395 -10.9661 6.5817 24 9 1.9468 -10.6807 7.8377 25 6 1.3801 -9.9480 5.6579 26 6 0.4936 -3.3062 2.4219 27 1 -0.3892 -3.3691 3.0579 28 8 1.6029 -2.8366 3.1908 29 6 0.2274 -2.3367 1.2716 30 1 -0.4850 0.8400 -0.0004 31 1 1.0517 -4.0695 -0.8335 32 1 2.7427 -3.5162 -0.7486 33 1 2.3147 -5.6010 0.6039 34 1 2.9047 -4.2393 1.5877 35 1 1.3343 -5.3004 3.8214 36 1 2.1108 -7.8483 4.2310 37 1 0.4142 -7.6626 4.7362 38 1 0.3800 -11.7893 3.0049 39 1 0.6734 -13.5957 4.6498 40 1 1.4143 -13.0721 6.9377 41 1 1.5812 -8.9253 5.9404 42 1 1.4690 -1.9620 3.5809 43 1 0.0986 -1.3292 1.6671 44 1 -0.6750 -2.6418 0.7419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100113831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:55 Heat of formation + Delta-G solvation = -112.691421 kcal Electronic energy + Delta-G solvation = -28803.061248 eV Core-core repulsion = 24443.230402 eV Total energy + Delta-G solvation = -4359.830846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.29734 -40.70191 -39.66484 -38.14113 -37.31737 -34.84943 -34.41115 -32.24194 -31.15655 -30.80017 -29.74787 -29.18004 -28.04411 -25.05824 -23.29685 -22.89588 -22.41771 -21.84445 -20.37240 -19.48271 -19.03949 -17.69021 -17.19656 -16.75326 -16.69748 -16.60593 -16.17033 -15.90534 -15.81485 -15.47291 -15.01742 -14.56941 -14.43051 -14.34445 -13.92940 -13.85414 -13.55904 -13.29677 -12.96954 -12.87477 -12.60121 -12.18487 -12.05750 -12.00192 -11.76841 -11.40167 -11.29048 -11.20423 -10.82688 -10.63905 -10.52686 -10.24810 -10.11215 -9.87903 -9.67475 -9.37491 -9.25877 -8.82413 -8.68345 -8.53873 -6.72837 -5.85315 -3.25914 0.71201 0.85349 2.31754 2.54716 3.17289 3.34666 3.40760 3.42303 3.49801 3.79256 4.28687 4.44401 4.44958 4.56044 4.60061 4.69124 4.71416 4.80003 4.88638 5.08529 5.24272 5.34571 5.39903 5.50931 5.57366 5.62488 5.76531 5.87974 5.90558 5.98432 6.14066 6.18448 6.24706 6.40052 6.48999 6.73308 6.75973 6.87588 6.93751 7.11569 7.37516 7.56045 7.74332 8.16152 8.22650 8.38641 9.13939 9.77013 10.33592 11.23675 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030092 B = 0.002009 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.267973 B =13935.307782 C =14427.077182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.244 4.244 8 H 0.065 0.935 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.137 4.137 12 C 0.164 3.836 13 H 0.092 0.908 14 N -0.713 5.713 15 C 0.511 3.489 16 O -0.519 6.519 17 C 0.038 3.962 18 O -0.281 6.281 19 C 0.163 3.837 20 C -0.159 4.159 21 C -0.050 4.050 22 C -0.195 4.195 23 C 0.139 3.861 24 F -0.137 7.137 25 C -0.251 4.251 26 C 0.073 3.927 27 H 0.045 0.955 28 O -0.561 6.561 29 C 0.145 3.855 30 H 0.254 0.746 31 H 0.020 0.980 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.403 0.597 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.376 0.624 43 H 0.097 0.903 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -20.390 14.127 24.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.373 4.373 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.177 4.177 12 C 0.061 3.939 13 H 0.110 0.890 14 N -0.366 5.366 15 C 0.295 3.705 16 O -0.395 6.395 17 C -0.041 4.041 18 O -0.192 6.192 19 C 0.116 3.884 20 C -0.178 4.178 21 C -0.068 4.068 22 C -0.214 4.214 23 C 0.120 3.880 24 F -0.115 7.115 25 C -0.270 4.270 26 C 0.012 3.988 27 H 0.062 0.938 28 O -0.366 6.366 29 C 0.018 3.982 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.237 0.763 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.223 0.777 43 H 0.115 0.885 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.732 -21.091 12.954 24.762 hybrid contribution 0.450 1.811 1.124 2.178 sum 1.182 -19.281 14.078 23.902 Atomic orbital electron populations 1.70006 1.05208 1.25663 1.54349 1.25022 0.95303 0.98407 1.01170 0.86345 0.78863 0.83228 0.78200 1.21728 1.21052 1.20890 1.19136 0.92673 0.84692 1.40826 0.91685 1.43864 1.35357 1.01618 1.49636 1.20893 0.97993 0.86367 0.92654 1.22316 0.97438 0.99446 0.98533 1.21070 0.99490 0.86253 0.87090 0.88970 1.46070 1.68689 1.05446 1.16352 1.19894 0.78590 0.83121 0.88879 1.90762 1.44988 1.77591 1.26111 1.22611 1.02973 0.81214 0.97310 1.86218 1.82829 1.13834 1.36322 1.18810 0.93468 0.88823 0.87279 1.20578 1.06078 0.89280 1.01837 1.20833 0.95168 0.99316 0.91531 1.21076 1.06861 0.94963 0.98528 1.17384 0.97837 0.93450 0.79368 1.91516 1.87745 1.94396 1.37871 1.21216 1.11414 1.00565 0.93833 1.22772 0.87757 0.93867 0.94387 0.93762 1.86336 1.42125 1.38325 1.69835 1.21360 0.89762 0.98477 0.88639 0.93557 0.96168 0.92347 0.92807 0.91111 0.76264 0.88737 0.88819 0.84121 0.84106 0.84572 0.84057 0.77697 0.88544 0.95425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.30 11.19 55.49 0.62 -24.68 16 2 C 0.00 -0.03 4.91 -17.43 -0.09 -0.12 16 3 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.47 9.58 -15.06 -0.14 -6.62 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.58 -14.04 2.94 -172.58 -0.51 -14.55 16 10 C 0.15 3.14 6.52 -3.71 -0.02 3.11 16 11 C -0.14 -2.51 5.51 -26.61 -0.15 -2.66 16 12 C 0.16 2.78 2.20 -67.89 -0.15 2.63 16 13 H 0.09 1.71 7.57 -51.93 -0.39 1.32 16 14 N -0.71 -9.63 5.05 -53.77 -0.27 -9.90 16 15 C 0.51 7.19 7.87 -10.99 -0.09 7.11 16 16 O -0.52 -9.65 16.16 -14.36 -0.23 -9.88 16 17 C 0.04 0.38 5.22 36.00 0.19 0.57 16 18 O -0.28 -3.41 9.67 -39.33 -0.38 -3.79 16 19 C 0.16 1.65 6.69 -39.22 -0.26 1.39 16 20 C -0.16 -1.37 9.99 -39.42 -0.39 -1.77 16 21 C -0.05 -0.34 10.04 -39.62 -0.40 -0.74 16 22 C -0.20 -1.44 10.02 -39.49 -0.40 -1.84 16 23 C 0.14 1.25 7.30 -39.44 -0.29 0.96 16 24 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 25 C -0.25 -2.26 9.02 -39.36 -0.35 -2.62 16 26 C 0.07 1.27 3.37 -26.83 -0.09 1.17 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 O -0.56 -9.32 12.08 -35.23 -0.43 -9.74 16 29 C 0.14 3.20 4.91 -3.93 -0.02 3.18 16 30 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.36 7.61 -51.93 -0.40 0.96 16 35 H 0.40 4.47 8.25 -40.82 -0.34 4.13 16 36 H 0.09 0.73 7.65 -51.93 -0.40 0.33 16 37 H 0.09 0.69 7.68 -51.93 -0.40 0.30 16 38 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 39 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 40 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.14 1.04 6.30 -52.49 -0.33 0.71 16 42 H 0.38 5.43 9.08 45.56 0.41 5.84 16 43 H 0.10 2.34 6.04 -51.93 -0.31 2.02 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -32.44 369.47 -8.34 -40.78 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.07 Total: 7.66 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -2.65 Total: 3.76 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.16 Total: -49.13 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -1.04 Total: -23.42 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.44 -8.34 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100113831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.910 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds