Wall clock time and date at job start Tue Mar 31 2020 20:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48496 * 109.47117 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46804 * 120.00272 * 3 2 1 6 6 H 1.48500 * 109.47109 * 240.00094 * 3 2 1 7 7 C 1.38814 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00314 * 162.77229 * 7 2 1 9 9 N 1.36940 * 119.99741 * 342.76707 * 7 2 1 10 10 C 1.46926 * 120.62975 * 152.45397 * 9 7 2 11 11 C 1.53187 * 108.77629 * 126.36813 * 10 9 7 12 12 C 1.53044 * 109.31375 * 54.63309 * 11 10 9 13 13 H 1.09005 * 109.45674 * 58.65432 * 12 11 10 14 14 N 1.46495 * 109.46025 * 178.61038 * 12 11 10 15 15 C 1.34778 * 120.00737 * 275.00114 * 14 12 11 16 16 O 1.21282 * 119.99547 * 359.97438 * 15 14 12 17 17 C 1.50693 * 120.00268 * 180.02562 * 15 14 12 18 18 O 1.42899 * 109.46988 * 179.97438 * 17 15 14 19 19 C 1.35898 * 117.00132 * 179.97438 * 18 17 15 20 20 C 1.38772 * 120.04623 * 180.02562 * 19 18 17 21 21 C 1.38128 * 119.99654 * 179.97438 * 20 19 18 22 22 C 1.38255 * 120.08154 * 359.97438 * 21 20 19 23 23 C 1.38471 * 120.08504 * 359.97438 * 22 21 20 24 24 F 1.35093 * 120.00005 * 180.02562 * 23 22 21 25 25 C 1.38392 * 120.00624 * 359.78789 * 23 22 21 26 26 C 1.53033 * 109.54034 * 298.63686 * 12 11 10 27 27 H 1.08992 * 109.50166 * 181.31705 * 26 12 11 28 28 O 1.42899 * 109.49543 * 301.38114 * 26 12 11 29 29 C 1.46930 * 120.63112 * 332.17432 * 9 7 2 30 30 H 0.96998 * 120.00327 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58548 * 246.15278 * 10 9 7 32 32 H 1.08993 * 109.58790 * 6.43652 * 10 9 7 33 33 H 1.09003 * 109.50190 * 174.58311 * 11 10 9 34 34 H 1.08997 * 109.49784 * 294.68541 * 11 10 9 35 35 H 0.97004 * 119.99659 * 95.00697 * 14 12 11 36 36 H 1.08998 * 109.47465 * 299.99931 * 17 15 14 37 37 H 1.09005 * 109.47302 * 60.00267 * 17 15 14 38 38 H 1.08003 * 119.99814 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.95980 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.95818 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.04267 * 180.25056 * 25 23 22 42 42 H 0.96703 * 114.00374 * 179.97438 * 28 26 12 43 43 H 1.08997 * 109.58242 * 353.41759 * 29 9 7 44 44 H 1.08994 * 109.58811 * 113.84402 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2775 9 7 1.3717 -2.3616 0.3503 10 6 1.8215 -3.6548 -0.1827 11 6 2.0734 -4.6099 0.9882 12 6 0.8147 -4.6909 1.8551 13 1 -0.0220 -5.0381 1.2488 14 7 1.0408 -5.6291 2.9573 15 6 0.8409 -6.9488 2.7708 16 8 0.4733 -7.3597 1.6905 17 6 1.0729 -7.9138 3.9048 18 8 0.7951 -9.2439 3.4627 19 6 0.9566 -10.2422 4.3706 20 6 0.7049 -11.5580 4.0086 21 6 0.8699 -12.5719 4.9320 22 6 1.2863 -12.2778 6.2172 23 6 1.5395 -10.9661 6.5817 24 9 1.9468 -10.6807 7.8377 25 6 1.3801 -9.9480 5.6579 26 6 0.4936 -3.3062 2.4219 27 1 -0.3892 -3.3691 3.0579 28 8 1.6029 -2.8366 3.1908 29 6 0.2274 -2.3367 1.2716 30 1 -0.4850 0.8400 -0.0004 31 1 1.0517 -4.0695 -0.8335 32 1 2.7427 -3.5162 -0.7486 33 1 2.3147 -5.6010 0.6039 34 1 2.9047 -4.2393 1.5877 35 1 1.3343 -5.3004 3.8214 36 1 2.1108 -7.8483 4.2310 37 1 0.4142 -7.6626 4.7362 38 1 0.3800 -11.7893 3.0049 39 1 0.6734 -13.5957 4.6498 40 1 1.4143 -13.0721 6.9377 41 1 1.5812 -8.9253 5.9404 42 1 1.4690 -1.9620 3.5809 43 1 0.0986 -1.3292 1.6671 44 1 -0.6750 -2.6418 0.7419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100113831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:54 Heat of formation + Delta-G solvation = -135.246403 kcal Electronic energy + Delta-G solvation = -28804.039306 eV Core-core repulsion = 24443.230402 eV Total energy + Delta-G solvation = -4360.808904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.96325 -41.57307 -40.76068 -39.46166 -38.13503 -36.49223 -35.76073 -33.97475 -31.91308 -31.66360 -31.04259 -30.74504 -29.09213 -26.79927 -24.32506 -23.85135 -23.58846 -23.27269 -21.54113 -21.00787 -19.73865 -19.20802 -18.40961 -17.68255 -17.50249 -17.41296 -17.17825 -17.05599 -16.75591 -16.60361 -16.54077 -15.76610 -15.64341 -15.40909 -15.38547 -15.04748 -14.93932 -14.55806 -14.31298 -13.82693 -13.66249 -13.62340 -13.36884 -13.13186 -12.78935 -12.63546 -12.62105 -12.39237 -12.35116 -12.25809 -12.06513 -12.02497 -11.85040 -11.46731 -10.99192 -10.74418 -10.57977 -10.09935 -9.97488 -9.33774 -8.68386 -7.87860 -5.31659 0.10551 0.24267 1.42853 1.46762 1.49936 1.50585 1.58019 2.51926 2.56243 2.57229 3.16505 3.24161 3.38090 3.50757 3.67394 3.79291 3.85300 3.90492 3.98407 4.00208 4.06496 4.07843 4.30511 4.33606 4.40668 4.56707 4.59649 4.72462 4.86091 4.93492 4.97170 5.04739 5.06046 5.17427 5.18237 5.33759 5.40607 5.43656 5.55814 5.65109 5.67119 6.19035 6.36848 6.49998 6.91312 7.13913 7.15231 7.82510 8.35242 9.18589 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030092 B = 0.002009 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.267973 B =13935.307782 C =14427.077182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.968 3.032 4 H -0.295 1.295 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.254 4.254 8 H 0.062 0.938 9 N -0.598 5.598 10 C 0.144 3.856 11 C -0.120 4.120 12 C 0.170 3.830 13 H 0.074 0.926 14 N -0.699 5.699 15 C 0.511 3.489 16 O -0.570 6.570 17 C 0.043 3.957 18 O -0.310 6.310 19 C 0.143 3.857 20 C -0.171 4.171 21 C -0.043 4.043 22 C -0.192 4.192 23 C 0.121 3.879 24 F -0.144 7.144 25 C -0.253 4.253 26 C 0.092 3.908 27 H 0.073 0.927 28 O -0.560 6.560 29 C 0.148 3.852 30 H 0.251 0.749 31 H 0.010 0.990 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.419 0.581 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.143 0.857 39 H 0.173 0.827 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.387 0.613 43 H 0.074 0.926 44 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 -21.677 16.356 27.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.796 3.204 4 H -0.221 1.221 5 H -0.201 1.201 6 H -0.208 1.208 7 C -0.384 4.384 8 H 0.079 0.921 9 N -0.321 5.321 10 C 0.018 3.982 11 C -0.160 4.160 12 C 0.065 3.935 13 H 0.092 0.908 14 N -0.352 5.352 15 C 0.297 3.703 16 O -0.449 6.449 17 C -0.035 4.035 18 O -0.222 6.222 19 C 0.097 3.903 20 C -0.189 4.189 21 C -0.060 4.060 22 C -0.210 4.210 23 C 0.101 3.899 24 F -0.122 7.122 25 C -0.272 4.272 26 C 0.031 3.969 27 H 0.090 0.910 28 O -0.367 6.367 29 C 0.022 3.978 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.256 0.744 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.161 0.839 39 H 0.190 0.810 40 H 0.175 0.825 41 H 0.173 0.827 42 H 0.236 0.764 43 H 0.092 0.908 44 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 1.630 -22.391 15.239 27.133 hybrid contribution 0.172 2.122 0.395 2.165 sum 1.801 -20.269 15.634 25.661 Atomic orbital electron populations 1.70155 1.06462 1.25981 1.55574 1.25707 0.96007 1.01193 1.01378 0.85344 0.77508 0.79281 0.78279 1.22136 1.20096 1.20794 1.19381 0.92725 0.85831 1.40510 0.92063 1.44091 1.35624 1.01868 1.50525 1.20971 0.97417 0.86042 0.93819 1.22077 0.97978 0.98508 0.97469 1.20719 0.98045 0.86895 0.87825 0.90803 1.45781 1.68382 1.05053 1.16024 1.20598 0.77024 0.83395 0.89266 1.90744 1.47234 1.78375 1.28497 1.22653 1.05362 0.79750 0.95696 1.86164 1.83621 1.14728 1.37713 1.18983 0.94974 0.88820 0.87538 1.20852 1.06124 0.89422 1.02529 1.21179 0.93772 1.00340 0.90757 1.21407 1.05538 0.94940 0.99159 1.17621 0.98748 0.94256 0.79235 1.91498 1.87954 1.94513 1.38257 1.21331 1.11046 1.01450 0.93372 1.22415 0.89084 0.92521 0.92880 0.90975 1.86308 1.41817 1.39229 1.69385 1.21259 0.88343 0.98576 0.89664 0.93995 0.97177 0.92574 0.92447 0.91379 0.74366 0.85974 0.85713 0.83944 0.80972 0.82504 0.82662 0.76382 0.90798 0.97899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.17 11.19 21.65 0.24 -52.93 16 2 C -0.05 -2.57 4.91 84.86 0.42 -2.15 16 3 Si 0.97 43.54 29.59 68.60 2.03 45.57 16 4 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.25 -13.65 9.58 84.03 0.81 -12.84 16 8 H 0.06 3.27 7.88 -2.91 -0.02 3.25 16 9 N -0.60 -29.30 2.94 -699.93 -2.06 -31.36 16 10 C 0.14 6.21 6.52 86.36 0.56 6.78 16 11 C -0.12 -4.36 5.51 30.67 0.17 -4.19 16 12 C 0.17 5.62 2.20 45.02 0.10 5.72 16 13 H 0.07 2.77 7.57 -2.38 -0.02 2.75 16 14 N -0.70 -17.53 5.05 -442.42 -2.23 -19.77 16 15 C 0.51 13.68 7.87 87.65 0.69 14.37 16 16 O -0.57 -21.20 16.16 16.00 0.26 -20.95 16 17 C 0.04 0.77 5.22 71.23 0.37 1.14 16 18 O -0.31 -7.19 9.67 -73.37 -0.71 -7.90 16 19 C 0.14 2.69 6.69 22.50 0.15 2.84 16 20 C -0.17 -2.70 9.99 22.37 0.22 -2.48 16 21 C -0.04 -0.47 10.04 22.25 0.22 -0.24 16 22 C -0.19 -2.34 10.02 22.33 0.22 -2.11 16 23 C 0.12 1.93 7.30 22.36 0.16 2.09 16 24 F -0.14 -2.53 17.27 44.97 0.78 -1.75 16 25 C -0.25 -4.06 9.02 22.41 0.20 -3.86 16 26 C 0.09 3.08 3.37 30.53 0.10 3.18 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 O -0.56 -17.49 12.08 -148.98 -1.80 -19.29 16 29 C 0.15 6.65 4.91 86.22 0.42 7.08 16 30 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 2.52 7.61 -2.39 -0.02 2.50 16 35 H 0.42 7.99 8.25 -92.71 -0.77 7.22 16 36 H 0.12 1.50 7.65 -2.39 -0.02 1.48 16 37 H 0.13 1.44 7.68 -2.38 -0.02 1.42 16 38 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 39 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 40 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.16 1.87 6.30 -2.91 -0.02 1.86 16 42 H 0.39 10.42 9.08 -74.06 -0.67 9.75 16 43 H 0.07 3.65 6.04 -2.39 -0.01 3.63 16 44 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -71.76 369.47 0.95 -70.81 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.38 Total: 22.24 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 4.83 Total: 15.32 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -4.05 Total: -104.06 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -2.25 Total: -48.14 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.75 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -71.76 0.95 -70.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100113831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.436 kcal (2) G-P(sol) polarization free energy of solvation -71.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds