Wall clock time and date at job start Tue Mar 31 2020 20:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.54059 * 112.57891 * 2 1 4 4 N 1.48328 * 104.51992 * 97.43477 * 3 2 1 5 5 C 1.36938 * 128.20281 * 221.79286 * 4 3 2 6 6 H 1.07993 * 120.00109 * 158.43056 * 5 4 3 7 7 C 1.38816 * 119.99544 * 338.43468 * 5 4 3 8 8 N 1.31617 * 120.00097 * 336.53034 * 7 5 4 9 9 Si 1.86804 * 119.99704 * 156.25487 * 7 5 4 10 10 H 1.48497 * 109.47327 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47192 * 119.99993 * 9 7 5 12 12 H 1.48499 * 109.46978 * 240.00070 * 9 7 5 13 13 C 1.48336 * 103.60419 * 41.53262 * 4 3 2 14 14 C 1.54454 * 104.32099 * 318.43366 * 13 4 3 15 15 H 1.08993 * 112.29874 * 263.01172 * 14 13 4 16 16 C 1.53742 * 109.01147 * 137.92376 * 14 13 4 17 17 N 1.47199 * 106.42961 * 229.45576 * 16 14 13 18 18 C 1.34780 * 126.70229 * 211.33415 * 17 16 14 19 19 O 1.21279 * 119.99586 * 180.02562 * 18 17 16 20 20 C 1.50693 * 119.99952 * 0.02562 * 18 17 16 21 21 C 1.53006 * 109.46831 * 180.02562 * 20 18 17 22 22 F 1.39896 * 109.47005 * 299.99827 * 21 20 18 23 23 F 1.39892 * 109.47179 * 60.00178 * 21 20 18 24 24 C 1.53005 * 109.46797 * 180.02562 * 21 20 18 25 25 F 1.39905 * 109.46728 * 179.97438 * 24 21 20 26 26 F 1.39896 * 109.46855 * 299.99494 * 24 21 20 27 27 C 1.47196 * 106.59174 * 31.37130 * 17 16 14 28 28 H 1.08993 * 109.46988 * 302.11653 * 1 2 3 29 29 H 1.09002 * 109.46619 * 62.11626 * 1 2 3 30 30 H 1.08998 * 109.46763 * 182.11402 * 1 2 3 31 31 H 1.09001 * 110.39935 * 338.64183 * 3 2 1 32 32 H 1.08998 * 110.34088 * 216.19300 * 3 2 1 33 33 H 0.96995 * 119.99872 * 353.97894 * 8 7 5 34 34 H 1.09003 * 110.46350 * 77.13838 * 13 4 3 35 35 H 1.08991 * 110.46475 * 199.59452 * 13 4 3 36 36 H 1.09001 * 110.06884 * 348.69986 * 16 14 13 37 37 H 1.09003 * 110.06621 * 110.21899 * 16 14 13 38 38 H 1.09000 * 109.47322 * 299.99902 * 20 18 17 39 39 H 1.08999 * 109.47320 * 60.00276 * 20 18 17 40 40 H 1.08994 * 109.47378 * 60.00358 * 24 21 20 41 41 H 1.08997 * 110.06404 * 87.87523 * 27 17 16 42 42 H 1.09003 * 110.06078 * 209.33108 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1216 1.4225 0.0000 4 7 2.4359 1.6945 1.4238 5 6 2.2330 2.8500 2.1301 6 1 2.1759 2.8210 3.2082 7 6 2.1004 4.0586 1.4603 8 7 2.6077 4.2017 0.2543 9 14 1.1954 5.4795 2.2675 10 1 0.7189 5.0635 3.6110 11 1 2.1148 6.6374 2.4057 12 1 0.0336 5.8673 1.4279 13 6 3.0163 0.4164 1.9034 14 6 2.1221 -0.6712 1.2685 15 1 1.3493 -1.0223 1.9522 16 6 3.0122 -1.8158 0.7574 17 7 2.5898 -2.0855 -0.6267 18 6 2.6194 -3.2744 -1.2608 19 8 2.2400 -3.3585 -2.4096 20 6 3.1239 -4.4992 -0.5423 21 6 3.0530 -5.7060 -1.4801 22 9 1.7272 -5.9111 -1.8768 23 9 3.8456 -5.4674 -2.6079 24 6 3.5646 -6.9497 -0.7504 25 9 3.4992 -8.0533 -1.6077 26 9 4.8903 -6.7450 -0.3533 27 6 2.1296 -0.8028 -1.1831 28 1 -0.3633 0.5463 0.8703 29 1 -0.3632 0.4806 -0.9084 30 1 -0.3633 -1.0270 0.0379 31 1 1.3889 2.1386 -0.3721 32 1 3.0286 1.4557 -0.6035 33 1 3.1485 3.4948 -0.1314 34 1 4.0453 0.3123 1.5593 35 1 2.9718 0.3620 2.9910 36 1 4.0590 -1.5127 0.7766 37 1 2.8684 -2.7045 1.3720 38 1 4.1570 -4.3396 -0.2336 39 1 2.5066 -4.6849 0.3367 40 1 2.9467 -7.1355 0.1281 41 1 2.9692 -0.2618 -1.6196 42 1 1.3635 -0.9764 -1.9389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101366709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:53 Heat of formation + Delta-G solvation = -202.637410 kcal Electronic energy + Delta-G solvation = -30743.653965 eV Core-core repulsion = 25838.066028 eV Total energy + Delta-G solvation = -4905.587937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.22024 -48.96527 -47.85545 -47.34285 -40.49112 -38.64003 -35.33646 -33.40714 -32.63770 -31.49428 -29.62204 -28.49855 -26.54565 -25.57598 -25.26883 -23.00870 -22.34268 -20.70441 -19.74098 -18.91721 -18.85752 -18.57940 -17.91645 -17.40906 -17.15459 -16.93763 -16.39002 -15.92741 -15.34969 -14.84157 -14.75001 -14.57395 -14.49760 -14.18672 -14.10023 -13.97883 -13.75160 -13.70805 -13.62898 -13.33000 -13.12274 -12.78561 -12.62599 -12.57942 -12.48116 -11.94288 -11.90195 -11.31215 -11.29017 -11.17777 -10.76224 -10.54984 -10.38648 -10.26585 -10.17266 -10.06924 -9.99384 -9.49651 -8.75686 -8.56471 -7.08320 -6.19809 -3.27988 2.11138 2.36612 2.74763 3.14356 3.28312 3.45357 3.45582 3.48839 3.52083 3.61193 4.14278 4.21328 4.32557 4.46961 4.63626 4.72350 4.74496 4.85834 5.01085 5.23765 5.32004 5.36416 5.39747 5.55258 5.71669 5.79930 5.88882 6.00445 6.00903 6.08676 6.27253 6.42195 6.46680 6.52549 6.69999 6.79964 6.93344 7.39981 7.64455 7.91179 8.35851 8.88131 9.69317 10.32120 11.15666 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.002520 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.455592 B =11106.560666 C =11397.312812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.086 4.086 3 C 0.148 3.852 4 N -0.596 5.596 5 C -0.329 4.329 6 H 0.065 0.935 7 C -0.025 4.025 8 N -0.918 5.918 9 Si 1.073 2.927 10 H -0.292 1.292 11 H -0.293 1.293 12 H -0.289 1.289 13 C 0.131 3.869 14 C -0.109 4.109 15 H 0.087 0.913 16 C 0.103 3.897 17 N -0.609 5.609 18 C 0.533 3.467 19 O -0.526 6.526 20 C -0.190 4.190 21 C 0.272 3.728 22 F -0.167 7.167 23 F -0.169 7.169 24 C 0.236 3.764 25 F -0.182 7.182 26 F -0.180 7.180 27 C 0.116 3.884 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.269 0.731 34 H 0.026 0.974 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.145 0.855 41 H 0.073 0.927 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.589 -21.377 1.966 21.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.089 4.089 3 C 0.021 3.979 4 N -0.320 5.320 5 C -0.457 4.457 6 H 0.083 0.917 7 C -0.227 4.227 8 N -0.559 5.559 9 Si 0.903 3.097 10 H -0.218 1.218 11 H -0.220 1.220 12 H -0.216 1.216 13 C 0.004 3.996 14 C -0.130 4.130 15 H 0.106 0.894 16 C -0.020 4.020 17 N -0.342 5.342 18 C 0.320 3.680 19 O -0.402 6.402 20 C -0.230 4.230 21 C 0.234 3.766 22 F -0.148 7.148 23 F -0.150 7.150 24 C 0.181 3.819 25 F -0.163 7.163 26 F -0.161 7.161 27 C -0.006 4.006 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.162 0.838 41 H 0.091 0.909 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.156 -19.821 1.111 19.853 hybrid contribution 0.787 -1.674 0.174 1.858 sum 0.632 -21.495 1.284 21.542 Atomic orbital electron populations 1.21560 0.93099 1.00542 1.02442 1.22567 0.95956 0.97726 0.92607 1.21741 0.97085 0.91302 0.87750 1.45134 1.69947 1.09524 1.07410 1.19767 1.50043 0.84418 0.91472 0.91693 1.25860 1.00508 0.98368 0.97944 1.70714 1.31837 1.35445 1.17857 0.83408 0.76426 0.75295 0.74595 1.21805 1.22036 1.21585 1.21853 0.93628 0.86709 0.97400 1.23084 0.97906 0.94753 0.97239 0.89444 1.22382 0.99357 0.98791 0.81473 1.48507 1.63206 1.07787 1.14733 1.19372 0.79253 0.82892 0.86518 1.90811 1.47841 1.84753 1.16828 1.22799 1.07725 0.92457 1.00039 1.21560 0.75964 0.94683 0.84439 1.93130 1.34286 1.95598 1.91777 1.93138 1.73135 1.95212 1.53480 1.22837 0.82562 0.83533 0.92925 1.93085 1.96271 1.54392 1.72526 1.93072 1.37086 1.94911 1.91017 1.22492 0.99346 0.82199 0.96582 0.91569 0.92658 0.93595 0.91280 0.95461 0.92021 0.95644 0.93011 0.90576 0.90985 0.84820 0.85101 0.83811 0.90850 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 8.64 37.16 0.32 -1.53 16 2 C -0.09 -1.41 1.10 -151.68 -0.17 -1.58 16 3 C 0.15 3.14 4.33 -2.48 -0.01 3.13 16 4 N -0.60 -13.93 3.22 -168.72 -0.54 -14.47 16 5 C -0.33 -8.78 10.22 -15.06 -0.15 -8.93 16 6 H 0.07 1.73 7.93 -52.49 -0.42 1.31 16 7 C -0.02 -0.68 5.14 -17.43 -0.09 -0.77 16 8 N -0.92 -26.83 12.77 55.49 0.71 -26.12 16 9 Si 1.07 24.56 29.98 -169.99 -5.10 19.46 16 10 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.13 2.38 6.76 -2.27 -0.02 2.37 16 14 C -0.11 -1.59 3.71 -88.28 -0.33 -1.92 16 15 H 0.09 1.21 7.93 -51.93 -0.41 0.80 16 16 C 0.10 1.17 6.38 -3.27 -0.02 1.15 16 17 N -0.61 -8.12 3.32 -170.84 -0.57 -8.68 16 18 C 0.53 7.15 7.65 -10.99 -0.08 7.07 16 19 O -0.53 -9.25 15.06 5.56 0.08 -9.17 16 20 C -0.19 -1.58 4.15 -27.88 -0.12 -1.70 16 21 C 0.27 2.72 1.40 -26.73 -0.04 2.69 16 22 F -0.17 -2.01 16.12 2.25 0.04 -1.98 16 23 F -0.17 -2.29 16.11 2.25 0.04 -2.25 16 24 C 0.24 1.62 4.83 37.16 0.18 1.80 16 25 F -0.18 -1.70 17.30 2.25 0.04 -1.67 16 26 F -0.18 -1.39 16.80 2.25 0.04 -1.35 16 27 C 0.12 1.79 6.26 -2.58 -0.02 1.77 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.66 7.15 -51.93 -0.37 1.29 16 32 H 0.03 0.61 6.82 -51.93 -0.35 0.25 16 33 H 0.27 7.85 6.44 -40.82 -0.26 7.59 16 34 H 0.03 0.46 7.18 -51.93 -0.37 0.09 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.85 7.11 -51.93 -0.37 0.49 16 37 H 0.07 0.57 7.31 -51.93 -0.38 0.19 16 38 H 0.13 0.84 7.80 -51.93 -0.41 0.44 16 39 H 0.13 0.61 7.86 -51.93 -0.41 0.20 16 40 H 0.14 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 1.18 7.15 -51.93 -0.37 0.81 16 42 H 0.08 1.24 7.65 -51.93 -0.40 0.84 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -33.86 351.60 -5.93 -39.79 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.43 Total: -2.39 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -0.54 Total: 3.53 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.40 Total: -49.28 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 0.15 Total: -7.25 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.10 Total: 19.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.86 -5.93 -39.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101366709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.848 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds