Wall clock time and date at job start Tue Mar 31 2020 20:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.54059 * 112.57891 * 2 1 4 4 N 1.48328 * 104.51992 * 97.43477 * 3 2 1 5 5 C 1.36938 * 128.20281 * 221.79286 * 4 3 2 6 6 H 1.07993 * 120.00109 * 158.43056 * 5 4 3 7 7 C 1.38816 * 119.99544 * 338.43468 * 5 4 3 8 8 N 1.31617 * 120.00097 * 336.53034 * 7 5 4 9 9 Si 1.86804 * 119.99704 * 156.25487 * 7 5 4 10 10 H 1.48497 * 109.47327 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47192 * 119.99993 * 9 7 5 12 12 H 1.48499 * 109.46978 * 240.00070 * 9 7 5 13 13 C 1.48336 * 103.60419 * 41.53262 * 4 3 2 14 14 C 1.54454 * 104.32099 * 318.43366 * 13 4 3 15 15 H 1.08993 * 112.29874 * 263.01172 * 14 13 4 16 16 C 1.53742 * 109.01147 * 137.92376 * 14 13 4 17 17 N 1.47199 * 106.42961 * 229.45576 * 16 14 13 18 18 C 1.34780 * 126.70229 * 211.33415 * 17 16 14 19 19 O 1.21279 * 119.99586 * 180.02562 * 18 17 16 20 20 C 1.50693 * 119.99952 * 0.02562 * 18 17 16 21 21 C 1.53006 * 109.46831 * 180.02562 * 20 18 17 22 22 F 1.39896 * 109.47005 * 299.99827 * 21 20 18 23 23 F 1.39892 * 109.47179 * 60.00178 * 21 20 18 24 24 C 1.53005 * 109.46797 * 180.02562 * 21 20 18 25 25 F 1.39905 * 109.46728 * 179.97438 * 24 21 20 26 26 F 1.39896 * 109.46855 * 299.99494 * 24 21 20 27 27 C 1.47196 * 106.59174 * 31.37130 * 17 16 14 28 28 H 1.08993 * 109.46988 * 302.11653 * 1 2 3 29 29 H 1.09002 * 109.46619 * 62.11626 * 1 2 3 30 30 H 1.08998 * 109.46763 * 182.11402 * 1 2 3 31 31 H 1.09001 * 110.39935 * 338.64183 * 3 2 1 32 32 H 1.08998 * 110.34088 * 216.19300 * 3 2 1 33 33 H 0.96995 * 119.99872 * 353.97894 * 8 7 5 34 34 H 1.09003 * 110.46350 * 77.13838 * 13 4 3 35 35 H 1.08991 * 110.46475 * 199.59452 * 13 4 3 36 36 H 1.09001 * 110.06884 * 348.69986 * 16 14 13 37 37 H 1.09003 * 110.06621 * 110.21899 * 16 14 13 38 38 H 1.09000 * 109.47322 * 299.99902 * 20 18 17 39 39 H 1.08999 * 109.47320 * 60.00276 * 20 18 17 40 40 H 1.08994 * 109.47378 * 60.00358 * 24 21 20 41 41 H 1.08997 * 110.06404 * 87.87523 * 27 17 16 42 42 H 1.09003 * 110.06078 * 209.33108 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1216 1.4225 0.0000 4 7 2.4359 1.6945 1.4238 5 6 2.2330 2.8500 2.1301 6 1 2.1759 2.8210 3.2082 7 6 2.1004 4.0586 1.4603 8 7 2.6077 4.2017 0.2543 9 14 1.1954 5.4795 2.2675 10 1 0.7189 5.0635 3.6110 11 1 2.1148 6.6374 2.4057 12 1 0.0336 5.8673 1.4279 13 6 3.0163 0.4164 1.9034 14 6 2.1221 -0.6712 1.2685 15 1 1.3493 -1.0223 1.9522 16 6 3.0122 -1.8158 0.7574 17 7 2.5898 -2.0855 -0.6267 18 6 2.6194 -3.2744 -1.2608 19 8 2.2400 -3.3585 -2.4096 20 6 3.1239 -4.4992 -0.5423 21 6 3.0530 -5.7060 -1.4801 22 9 1.7272 -5.9111 -1.8768 23 9 3.8456 -5.4674 -2.6079 24 6 3.5646 -6.9497 -0.7504 25 9 3.4992 -8.0533 -1.6077 26 9 4.8903 -6.7450 -0.3533 27 6 2.1296 -0.8028 -1.1831 28 1 -0.3633 0.5463 0.8703 29 1 -0.3632 0.4806 -0.9084 30 1 -0.3633 -1.0270 0.0379 31 1 1.3889 2.1386 -0.3721 32 1 3.0286 1.4557 -0.6035 33 1 3.1485 3.4948 -0.1314 34 1 4.0453 0.3123 1.5593 35 1 2.9718 0.3620 2.9910 36 1 4.0590 -1.5127 0.7766 37 1 2.8684 -2.7045 1.3720 38 1 4.1570 -4.3396 -0.2336 39 1 2.5066 -4.6849 0.3367 40 1 2.9467 -7.1355 0.1281 41 1 2.9692 -0.2618 -1.6196 42 1 1.3635 -0.9764 -1.9389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101366709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:53 Heat of formation + Delta-G solvation = -224.450478 kcal Electronic energy + Delta-G solvation = -30744.599851 eV Core-core repulsion = 25838.066028 eV Total energy + Delta-G solvation = -4906.533823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.87382 -49.64208 -48.52139 -48.07795 -41.68153 -39.88316 -36.82846 -34.60776 -33.85408 -32.89468 -31.11554 -29.28799 -28.04177 -26.92881 -26.67799 -24.19840 -23.30536 -22.26515 -20.76440 -20.08486 -19.55424 -19.45389 -19.20420 -18.58945 -17.90644 -17.79170 -17.22913 -16.98440 -16.49262 -16.15861 -15.91473 -15.58539 -15.56264 -15.32893 -15.23203 -15.13052 -14.94921 -14.64872 -14.60435 -14.43371 -14.16325 -13.93586 -13.74367 -13.47581 -13.30400 -13.24919 -13.11302 -12.80320 -12.65667 -12.54531 -12.21889 -11.93898 -11.87539 -11.70103 -11.67236 -11.51724 -11.43828 -11.08301 -10.57954 -9.85193 -9.02895 -8.32537 -5.36032 1.39704 1.44082 1.58626 1.66662 1.81418 1.88744 2.48116 2.63810 2.78040 2.83785 2.99781 3.19361 3.27288 3.37077 3.59382 3.70598 3.75233 3.80555 3.85988 4.08103 4.16588 4.20299 4.27664 4.29031 4.42894 4.57938 4.66150 4.69970 4.83763 4.85154 4.90826 4.97233 5.06565 5.15027 5.23838 5.32026 5.41430 5.68781 6.29920 6.39072 6.85034 6.90643 7.67332 8.36926 9.03168 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.002520 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.455592 B =11106.560666 C =11397.312812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 C 0.156 3.844 4 N -0.624 5.624 5 C -0.327 4.327 6 H 0.065 0.935 7 C -0.083 4.083 8 N -0.953 5.953 9 Si 1.120 2.880 10 H -0.268 1.268 11 H -0.293 1.293 12 H -0.292 1.292 13 C 0.127 3.873 14 C -0.096 4.096 15 H 0.108 0.892 16 C 0.107 3.893 17 N -0.607 5.607 18 C 0.527 3.473 19 O -0.577 6.577 20 C -0.180 4.180 21 C 0.252 3.748 22 F -0.184 7.184 23 F -0.199 7.199 24 C 0.243 3.757 25 F -0.200 7.200 26 F -0.184 7.184 27 C 0.121 3.879 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.008 0.992 33 H 0.253 0.747 34 H 0.029 0.971 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.205 0.795 41 H 0.057 0.943 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 -24.190 4.801 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.081 4.081 3 C 0.029 3.971 4 N -0.348 5.348 5 C -0.456 4.456 6 H 0.082 0.918 7 C -0.278 4.278 8 N -0.596 5.596 9 Si 0.945 3.055 10 H -0.193 1.193 11 H -0.220 1.220 12 H -0.218 1.218 13 C 0.002 3.998 14 C -0.117 4.117 15 H 0.126 0.874 16 C -0.015 4.015 17 N -0.340 5.340 18 C 0.316 3.684 19 O -0.457 6.457 20 C -0.219 4.219 21 C 0.214 3.786 22 F -0.165 7.165 23 F -0.180 7.180 24 C 0.189 3.811 25 F -0.181 7.181 26 F -0.165 7.165 27 C -0.002 4.002 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.026 0.974 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.146 0.854 38 H 0.179 0.821 39 H 0.200 0.800 40 H 0.222 0.778 41 H 0.075 0.925 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.379 -22.685 3.987 23.035 hybrid contribution 0.909 -0.812 -0.730 1.421 sum 0.530 -23.496 3.257 23.727 Atomic orbital electron populations 1.21495 0.92287 1.01787 1.01433 1.22381 0.96450 0.94697 0.94556 1.21573 0.95435 0.93447 0.86617 1.45403 1.71036 1.10354 1.08057 1.20037 1.48070 0.85688 0.91767 0.91761 1.27166 1.01364 1.01211 0.98059 1.70834 1.34004 1.35353 1.19392 0.82783 0.75193 0.72728 0.74799 1.19281 1.21995 1.21829 1.22077 0.94290 0.85325 0.98134 1.23003 0.98025 0.94562 0.96063 0.87376 1.22495 0.98562 0.99704 0.80701 1.48514 1.63011 1.06975 1.15453 1.20295 0.78084 0.83860 0.86142 1.90798 1.50001 1.85543 1.19334 1.22944 1.10056 0.88608 1.00297 1.22278 0.75025 0.97282 0.83975 1.93091 1.35492 1.95842 1.92034 1.93074 1.73879 1.95612 1.55473 1.23272 0.82900 0.81178 0.93729 1.93048 1.96352 1.55160 1.73564 1.93067 1.37769 1.94811 1.90853 1.22189 0.98531 0.83555 0.95949 0.93076 0.93339 0.90966 0.95323 0.97393 0.93652 0.95333 0.92239 0.90095 0.85416 0.82096 0.79970 0.77821 0.92466 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.43 8.64 71.98 0.62 -2.80 16 2 C -0.08 -2.53 1.10 -50.35 -0.06 -2.58 16 3 C 0.16 6.89 4.33 86.39 0.37 7.27 16 4 N -0.62 -29.49 3.22 -687.71 -2.21 -31.70 16 5 C -0.33 -17.64 10.22 84.03 0.86 -16.78 16 6 H 0.06 3.40 7.93 -2.91 -0.02 3.38 16 7 C -0.08 -4.64 5.14 84.86 0.44 -4.20 16 8 N -0.95 -58.10 12.77 21.65 0.28 -57.83 16 9 Si 1.12 50.26 29.98 68.60 2.06 52.31 16 10 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.13 4.41 6.76 86.52 0.58 4.99 16 14 C -0.10 -2.50 3.71 -9.28 -0.03 -2.54 16 15 H 0.11 2.46 7.93 -2.39 -0.02 2.44 16 16 C 0.11 1.92 6.38 86.50 0.55 2.47 16 17 N -0.61 -14.43 3.32 -812.80 -2.70 -17.13 16 18 C 0.53 12.70 7.65 87.65 0.67 13.37 16 19 O -0.58 -19.99 15.06 -3.03 -0.05 -20.03 16 20 C -0.18 -2.12 4.15 29.85 0.12 -1.99 16 21 C 0.25 4.32 1.40 30.60 0.04 4.36 16 22 F -0.18 -4.06 16.12 44.97 0.73 -3.34 16 23 F -0.20 -5.25 16.11 44.97 0.72 -4.53 16 24 C 0.24 2.35 4.83 71.98 0.35 2.70 16 25 F -0.20 -3.30 17.30 44.97 0.78 -2.52 16 26 F -0.18 -2.12 16.80 44.97 0.76 -1.37 16 27 C 0.12 3.70 6.26 86.95 0.54 4.24 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.03 1.46 7.15 -2.39 -0.02 1.45 16 32 H 0.01 0.39 6.82 -2.39 -0.02 0.37 16 33 H 0.25 15.69 6.44 -92.71 -0.60 15.10 16 34 H 0.03 0.99 7.18 -2.39 -0.02 0.97 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 1.45 7.11 -2.39 -0.02 1.44 16 37 H 0.13 0.99 7.31 -2.39 -0.02 0.98 16 38 H 0.16 1.09 7.80 -2.39 -0.02 1.07 16 39 H 0.18 0.27 7.86 -2.39 -0.02 0.25 16 40 H 0.21 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.06 1.92 7.15 -2.39 -0.02 1.90 16 42 H 0.07 2.23 7.65 -2.39 -0.02 2.21 16 Total: -1.00 -81.09 351.60 6.65 -74.43 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 1.23 Total: 3.19 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.07 Total: 8.50 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -4.63 Total: -106.66 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.05 Total: -20.03 kcal Atomic # 9 Polarization: -14.73 SS G_CDS: 2.98 Total: -11.75 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 2.06 Total: 52.31 kcal Total: -81.09 6.65 -74.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101366709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.018 kcal (2) G-P(sol) polarization free energy of solvation -81.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds