Wall clock time and date at job start Tue Mar 31 2020 20:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46738 * 125.25020 * 359.69866 * 9 7 2 11 11 C 1.54241 * 106.45487 * 161.16857 * 10 9 7 12 12 C 1.53866 * 103.66086 * 28.36909 * 11 10 9 13 13 C 1.53005 * 111.25520 * 93.76737 * 12 11 10 14 14 N 1.46496 * 109.47157 * 63.56530 * 13 12 11 15 15 C 1.34782 * 120.00234 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99372 * 359.97438 * 15 14 13 17 17 C 1.50695 * 120.00175 * 179.97438 * 15 14 13 18 18 H 1.09004 * 109.47184 * 344.99212 * 17 15 14 19 19 F 1.39896 * 109.47424 * 104.99822 * 17 15 14 20 20 C 1.52999 * 109.46884 * 224.99653 * 17 15 14 21 21 F 1.39904 * 109.47435 * 59.99861 * 20 17 15 22 22 F 1.39903 * 109.47209 * 179.97438 * 20 17 15 23 23 F 1.39899 * 109.47135 * 300.00045 * 20 17 15 24 24 C 1.53358 * 110.28955 * 218.28113 * 12 11 10 25 25 C 1.54275 * 106.46342 * 118.16788 * 24 12 11 26 26 C 1.54674 * 104.11573 * 333.96985 * 25 24 12 27 27 C 1.46889 * 125.24865 * 179.97438 * 9 7 2 28 28 H 1.08997 * 111.83946 * 58.46670 * 27 9 7 29 29 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 30 30 H 1.08999 * 110.03724 * 280.54717 * 10 9 7 31 31 H 1.08998 * 110.04283 * 42.00216 * 10 9 7 32 32 H 1.09005 * 110.76471 * 269.76437 * 11 10 9 33 33 H 1.08998 * 110.58529 * 146.89775 * 11 10 9 34 34 H 1.09003 * 109.46929 * 183.55876 * 13 12 11 35 35 H 1.08993 * 109.47023 * 303.56054 * 13 12 11 36 36 H 0.96998 * 120.00117 * 359.97438 * 14 13 12 37 37 H 1.08994 * 110.06094 * 237.42068 * 24 12 11 38 38 H 1.08996 * 110.05547 * 358.92261 * 24 12 11 39 39 H 1.09006 * 110.49667 * 92.63064 * 25 24 12 40 40 H 1.08998 * 110.50041 * 215.17200 * 25 24 12 41 41 H 1.08999 * 110.61731 * 278.82635 * 26 25 24 42 42 H 1.09002 * 110.61370 * 155.84026 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1357 -2.5223 0.0063 11 6 -0.4447 -3.9553 -0.4733 12 6 0.7945 -4.7584 -0.0408 13 6 0.5834 -5.4099 1.3274 14 7 -0.5088 -6.3824 1.2420 15 6 -0.8747 -7.0826 2.3340 16 8 -0.2993 -6.9078 3.3872 17 6 -1.9986 -8.0826 2.2462 18 1 -2.5604 -7.9181 1.3267 19 9 -1.4710 -9.3783 2.2449 20 6 -2.9283 -7.9118 3.4493 21 9 -3.4560 -6.6161 3.4507 22 9 -3.9721 -8.8398 3.3676 23 9 -2.2073 -8.1229 4.6294 24 6 1.1573 -5.7943 -1.1119 25 6 2.5702 -5.4293 -1.6123 26 6 2.6841 -3.9100 -1.3453 27 6 1.9405 -3.7220 0.0005 28 1 2.5908 -3.8687 0.8629 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5205 -2.3723 1.0150 31 1 -0.5801 -1.7971 -0.6753 32 1 -0.5603 -3.9837 -1.5569 33 1 -1.3398 -4.3388 0.0164 34 1 1.4984 -5.9172 1.6333 35 1 0.3308 -4.6432 2.0598 36 1 -0.9692 -6.5219 0.3997 37 1 1.1609 -6.7944 -0.6787 38 1 0.4449 -5.7457 -1.9354 39 1 3.3275 -5.9739 -1.0483 40 1 2.6641 -5.6399 -2.6776 41 1 2.1938 -3.3434 -2.1369 42 1 3.7290 -3.6142 -1.2510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107414103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:00 Heat of formation + Delta-G solvation = -210.693098 kcal Electronic energy + Delta-G solvation = -30961.659632 eV Core-core repulsion = 26055.722374 eV Total energy + Delta-G solvation = -4905.937258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.62060 -48.77626 -48.01678 -47.82436 -40.32026 -39.12049 -35.10463 -34.14330 -32.06902 -31.43996 -30.29368 -27.98343 -26.78445 -25.25569 -23.96000 -23.77543 -21.43061 -20.16411 -20.03888 -19.40924 -19.11511 -18.85095 -18.24284 -17.60881 -17.05641 -16.72603 -15.79222 -15.35882 -15.21862 -14.94187 -14.83049 -14.72126 -14.67247 -14.45900 -14.38237 -14.08392 -14.07222 -14.01377 -13.59852 -13.26618 -13.18358 -12.98520 -12.62172 -11.98533 -11.94199 -11.62217 -11.37013 -11.22320 -10.86139 -10.81783 -10.73885 -10.44122 -10.35988 -10.13876 -9.98805 -9.94476 -9.65269 -9.58392 -9.23941 -8.64446 -6.86749 -5.70024 -3.09294 1.65262 2.03339 2.49058 3.06145 3.37754 3.43871 3.45093 3.45926 3.49530 3.87878 4.10922 4.41510 4.45788 4.76519 4.85585 4.91496 5.39228 5.43346 5.48510 5.65861 5.71535 5.75324 5.85883 5.95109 5.99502 6.04332 6.11826 6.21767 6.32520 6.37410 6.44611 6.59378 6.65911 6.77664 7.01015 7.06501 7.49176 7.64072 7.65687 7.81941 8.31103 9.20433 9.81342 10.43719 11.35567 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.016727 B = 0.003114 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.558150 B = 8990.780057 C = 9994.893186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.161 3.839 11 C -0.134 4.134 12 C -0.084 4.084 13 C 0.138 3.862 14 N -0.700 5.700 15 C 0.490 3.510 16 O -0.496 6.496 17 C 0.039 3.961 18 H 0.146 0.854 19 F -0.154 7.154 20 C 0.447 3.553 21 F -0.164 7.164 22 F -0.170 7.170 23 F -0.155 7.155 24 C -0.112 4.112 25 C -0.123 4.123 26 C -0.130 4.130 27 C 0.173 3.827 28 H 0.048 0.952 29 H 0.251 0.749 30 H 0.013 0.987 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.405 0.595 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 -18.038 -0.777 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.037 3.963 11 C -0.172 4.172 12 C -0.085 4.085 13 C 0.016 3.984 14 N -0.351 5.351 15 C 0.270 3.730 16 O -0.369 6.369 17 C -0.003 4.003 18 H 0.163 0.837 19 F -0.135 7.135 20 C 0.391 3.609 21 F -0.145 7.145 22 F -0.152 7.152 23 F -0.136 7.136 24 C -0.150 4.150 25 C -0.161 4.161 26 C -0.170 4.170 27 C 0.065 3.935 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.240 0.760 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.968 -17.669 0.039 18.354 hybrid contribution 0.024 0.684 -0.216 0.718 sum -4.944 -16.985 -0.177 17.691 Atomic orbital electron populations 1.69879 1.04862 1.24687 1.57588 1.24770 0.95689 0.97667 1.02373 0.86048 0.78722 0.83807 0.77221 1.20534 1.21811 1.21803 1.19080 0.90516 0.82326 1.43002 0.90449 1.44345 1.01566 0.99509 1.86569 1.21492 0.84595 0.90929 0.99323 1.22847 0.94921 0.99114 1.00351 1.21904 0.98487 0.95428 0.92646 1.21550 0.88325 0.90333 0.98189 1.46009 1.37090 1.40444 1.11589 1.19960 0.84930 0.82547 0.85590 1.90871 1.53170 1.64767 1.28097 1.22782 0.95587 0.81946 0.99959 0.83685 1.93014 1.87547 1.35516 1.97397 1.20291 0.80326 0.74933 0.85308 1.93281 1.87168 1.37466 1.96625 1.93250 1.59577 1.65973 1.96350 1.93314 1.77013 1.94329 1.48936 1.22167 0.97801 0.97395 0.97591 1.22310 0.96115 0.97693 0.99979 1.22995 1.00365 0.93739 0.99893 1.21518 0.91671 0.85334 0.94980 0.93482 0.93845 0.96876 0.88776 0.91851 0.92591 0.90892 0.90059 0.75970 0.92380 0.91556 0.92316 0.92400 0.90895 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.08 10.14 55.49 0.56 -25.51 16 2 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.22 -5.85 9.96 -15.06 -0.15 -6.00 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.04 2.99 -162.35 -0.48 -14.53 16 10 C 0.16 3.64 5.67 -3.26 -0.02 3.62 16 11 C -0.13 -2.17 5.82 -25.63 -0.15 -2.32 16 12 C -0.08 -1.23 0.53 -153.05 -0.08 -1.31 16 13 C 0.14 1.94 4.45 -4.04 -0.02 1.92 16 14 N -0.70 -7.66 4.63 -60.30 -0.28 -7.94 16 15 C 0.49 5.99 6.91 -10.99 -0.08 5.91 16 16 O -0.50 -8.15 15.60 5.55 0.09 -8.06 16 17 C 0.04 0.35 3.78 -27.89 -0.11 0.24 16 18 H 0.15 0.63 8.00 -51.93 -0.42 0.22 16 19 F -0.15 -1.55 17.03 2.25 0.04 -1.51 16 20 C 0.45 4.79 2.86 37.16 0.11 4.90 16 21 F -0.16 -1.88 17.02 2.25 0.04 -1.84 16 22 F -0.17 -1.67 17.30 2.25 0.04 -1.63 16 23 F -0.15 -2.06 15.95 2.25 0.04 -2.02 16 24 C -0.11 -1.33 5.59 -25.88 -0.14 -1.47 16 25 C -0.12 -1.58 6.85 -25.18 -0.17 -1.76 16 26 C -0.13 -2.19 6.22 -24.84 -0.15 -2.34 16 27 C 0.17 3.23 3.59 -65.89 -0.24 3.00 16 28 H 0.05 0.91 7.93 -51.93 -0.41 0.50 16 29 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 32 H 0.06 0.99 7.41 -51.93 -0.38 0.61 16 33 H 0.06 0.78 7.21 -51.93 -0.37 0.41 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.40 3.22 7.55 -40.82 -0.31 2.91 16 37 H 0.06 0.60 7.48 -51.93 -0.39 0.21 16 38 H 0.07 0.74 7.27 -51.93 -0.38 0.36 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -30.89 351.27 -6.47 -37.36 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.48 Total: -0.26 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.29 Total: 4.04 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.20 Total: -47.98 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.15 Total: -7.01 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.89 -6.47 -37.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107414103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.336 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds