Wall clock time and date at job start Tue Mar 31 2020 20:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46870 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47033 * 299.99763 * 3 2 1 6 6 H 1.48500 * 109.47002 * 59.99996 * 3 2 1 7 7 C 1.38807 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00598 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.46738 * 125.25162 * 359.96814 * 9 7 2 11 11 C 1.54085 * 106.53924 * 161.26156 * 10 9 7 12 12 C 1.53862 * 103.73407 * 28.07149 * 11 10 9 13 13 C 1.52996 * 111.26295 * 93.95054 * 12 11 10 14 14 N 1.46498 * 109.47059 * 61.00921 * 13 12 11 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 12 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 H 1.09006 * 109.46655 * 15.00327 * 17 15 14 19 19 F 1.39899 * 109.47027 * 255.00737 * 17 15 14 20 20 C 1.52995 * 109.47113 * 135.00030 * 17 15 14 21 21 F 1.39898 * 109.47166 * 60.00502 * 20 17 15 22 22 F 1.39899 * 109.46955 * 180.02562 * 20 17 15 23 23 F 1.39899 * 109.47561 * 299.99879 * 20 17 15 24 24 C 1.53364 * 110.28296 * 217.86792 * 12 11 10 25 25 C 1.55544 * 105.83594 * 118.03246 * 24 12 11 26 26 C 1.54684 * 104.34930 * 334.35722 * 25 24 12 27 27 C 1.46898 * 125.24944 * 180.02562 * 9 7 2 28 28 H 1.08994 * 111.84009 * 58.48696 * 27 9 7 29 29 H 0.97003 * 120.00135 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.03813 * 41.99901 * 10 9 7 31 31 H 1.08997 * 110.04465 * 280.53516 * 10 9 7 32 32 H 1.08998 * 110.57514 * 269.50160 * 11 10 9 33 33 H 1.09008 * 110.69406 * 146.68988 * 11 10 9 34 34 H 1.09004 * 109.47066 * 301.01189 * 13 12 11 35 35 H 1.08994 * 109.46974 * 181.01337 * 13 12 11 36 36 H 0.97001 * 120.00384 * 0.02562 * 14 13 12 37 37 H 1.08997 * 110.05777 * 238.03527 * 24 12 11 38 38 H 1.08998 * 110.05584 * 359.54028 * 24 12 11 39 39 H 1.08994 * 110.54335 * 215.54569 * 25 24 12 40 40 H 1.08997 * 110.34786 * 93.06916 * 25 24 12 41 41 H 1.08998 * 110.61444 * 278.64685 * 26 25 24 42 42 H 1.09001 * 110.61527 * 155.66324 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1357 -2.5223 0.0007 11 6 -0.4446 -3.9553 -0.4739 12 6 0.7943 -4.7584 -0.0411 13 6 0.5830 -5.4102 1.3269 14 7 -0.5485 -6.3379 1.2562 15 6 -0.9177 -7.0349 2.3491 16 8 -0.3164 -6.8901 3.3924 17 6 -2.0778 -7.9939 2.2750 18 1 -2.3183 -8.1931 1.2306 19 9 -3.1897 -7.4308 2.9103 20 6 -1.7019 -9.3038 2.9704 21 9 -1.3932 -9.0482 4.3108 22 9 -2.7786 -10.1943 2.9010 23 9 -0.5900 -9.8669 2.3350 24 6 1.1486 -5.8041 -1.1056 25 6 2.5706 -5.4292 -1.6123 26 6 2.6845 -3.9099 -1.3450 27 6 1.9404 -3.7221 0.0016 28 1 2.5898 -3.8685 0.8647 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5774 -1.7986 -0.6845 31 1 -0.5248 -2.3701 1.0074 32 1 -0.5602 -3.9835 -1.5574 33 1 -1.3399 -4.3387 0.0158 34 1 0.3748 -4.6389 2.0685 35 1 1.4826 -5.9553 1.6124 36 1 -1.0293 -6.4539 0.4218 37 1 1.1408 -6.8018 -0.6667 38 1 0.4385 -5.7527 -1.9309 39 1 2.6641 -5.6374 -2.6780 40 1 3.3291 -5.9736 -1.0499 41 1 2.1945 -3.3432 -2.1367 42 1 3.7294 -3.6141 -1.2504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107414104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:04 Heat of formation + Delta-G solvation = -210.286290 kcal Electronic energy + Delta-G solvation = -30920.497101 eV Core-core repulsion = 26014.577483 eV Total energy + Delta-G solvation = -4905.919618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.66284 -48.76670 -48.05378 -47.86298 -40.31149 -39.09819 -35.10304 -34.10267 -32.05639 -31.43650 -30.29876 -27.98984 -26.77240 -25.26614 -23.95537 -23.78222 -21.43598 -20.15999 -20.05705 -19.42312 -19.15822 -18.86894 -18.24277 -17.61212 -17.08949 -16.68027 -15.79780 -15.36019 -15.20651 -14.95289 -14.88932 -14.75509 -14.66444 -14.44153 -14.35641 -14.13221 -14.12798 -14.08145 -13.59750 -13.22074 -13.16974 -12.99286 -12.61430 -11.99384 -11.93141 -11.62935 -11.37495 -11.21497 -10.85782 -10.81427 -10.75090 -10.43410 -10.36691 -10.13867 -9.98441 -9.94207 -9.65215 -9.58718 -9.23813 -8.64172 -6.86634 -5.70049 -3.09196 1.64710 2.00952 2.49774 3.02355 3.37804 3.42487 3.43936 3.45976 3.48078 3.87791 4.09307 4.40912 4.45833 4.76481 4.86017 4.90867 5.40195 5.42267 5.48202 5.65528 5.71217 5.75319 5.85315 5.94584 5.98280 6.04329 6.12156 6.21696 6.32126 6.37184 6.44420 6.59620 6.65795 6.77525 7.01244 7.06645 7.49373 7.63981 7.66005 7.81915 8.30922 9.20431 9.81350 10.43767 11.35678 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.002936 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.710915 B = 9535.270058 C =10242.453833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.162 3.838 11 C -0.134 4.134 12 C -0.084 4.084 13 C 0.137 3.863 14 N -0.700 5.700 15 C 0.490 3.510 16 O -0.496 6.496 17 C 0.039 3.961 18 H 0.145 0.855 19 F -0.152 7.152 20 C 0.447 3.553 21 F -0.154 7.154 22 F -0.170 7.170 23 F -0.167 7.167 24 C -0.112 4.112 25 C -0.122 4.122 26 C -0.130 4.130 27 C 0.174 3.826 28 H 0.048 0.952 29 H 0.251 0.749 30 H 0.094 0.906 31 H 0.013 0.987 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.405 0.595 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.141 -19.410 -1.242 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.037 3.963 11 C -0.173 4.173 12 C -0.085 4.085 13 C 0.015 3.985 14 N -0.351 5.351 15 C 0.270 3.730 16 O -0.369 6.369 17 C -0.002 4.002 18 H 0.163 0.837 19 F -0.132 7.132 20 C 0.392 3.608 21 F -0.135 7.135 22 F -0.151 7.151 23 F -0.149 7.149 24 C -0.150 4.150 25 C -0.160 4.160 26 C -0.170 4.170 27 C 0.065 3.935 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.240 0.760 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.758 -19.044 -0.426 19.416 hybrid contribution 0.048 0.649 -0.230 0.690 sum -3.710 -18.395 -0.657 18.777 Atomic orbital electron populations 1.69886 1.04856 1.24690 1.57568 1.24776 0.95699 0.97681 1.02380 0.86044 0.78716 0.83798 0.77216 1.20533 1.21817 1.21804 1.19076 0.90512 0.82319 1.43014 0.90442 1.44342 1.01551 0.99518 1.86577 1.21446 0.84593 0.90879 0.99363 1.22824 0.94956 0.99144 1.00362 1.21911 0.98470 0.95405 0.92672 1.21561 0.87236 0.91379 0.98296 1.46012 1.34396 1.42554 1.12161 1.19968 0.84889 0.82748 0.85436 1.90868 1.53247 1.64212 1.28603 1.22775 0.86576 0.90861 1.00037 0.83750 1.93034 1.51099 1.85462 1.83645 1.20312 0.75506 0.86032 0.78979 1.93319 1.92743 1.93834 1.33626 1.93251 1.55245 1.70428 1.96182 1.93251 1.53470 1.86405 1.81724 1.22403 0.97786 0.97271 0.97558 1.22520 0.96022 0.97598 0.99906 1.23003 1.00367 0.93742 0.99895 1.21526 0.91644 0.85306 0.94977 0.93426 0.93849 0.88843 0.96901 0.91861 0.92588 0.90133 0.90844 0.75958 0.92205 0.91612 0.92434 0.92327 0.90905 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.13 10.14 55.49 0.56 -25.57 16 2 C -0.01 -0.27 5.48 -17.43 -0.10 -0.36 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.22 -5.85 9.96 -15.06 -0.15 -6.00 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.07 2.99 -162.39 -0.48 -14.55 16 10 C 0.16 3.67 5.65 -3.35 -0.02 3.65 16 11 C -0.13 -2.19 5.77 -25.72 -0.15 -2.34 16 12 C -0.08 -1.23 0.53 -153.04 -0.08 -1.31 16 13 C 0.14 1.93 4.43 -4.04 -0.02 1.91 16 14 N -0.70 -7.70 4.65 -60.30 -0.28 -7.98 16 15 C 0.49 6.01 6.91 -10.98 -0.08 5.93 16 16 O -0.50 -8.16 15.60 5.55 0.09 -8.07 16 17 C 0.04 0.35 3.78 -27.88 -0.11 0.25 16 18 H 0.15 0.61 8.00 -51.93 -0.42 0.19 16 19 F -0.15 -1.66 17.03 2.25 0.04 -1.62 16 20 C 0.45 4.55 2.86 37.15 0.11 4.65 16 21 F -0.15 -1.99 15.95 2.25 0.04 -1.96 16 22 F -0.17 -1.60 17.30 2.25 0.04 -1.56 16 23 F -0.17 -1.68 17.02 2.25 0.04 -1.64 16 24 C -0.11 -1.33 5.75 -25.19 -0.14 -1.47 16 25 C -0.12 -1.57 6.88 -24.49 -0.17 -1.74 16 26 C -0.13 -2.19 6.23 -24.79 -0.15 -2.34 16 27 C 0.17 3.24 3.60 -65.83 -0.24 3.00 16 28 H 0.05 0.92 7.92 -51.93 -0.41 0.51 16 29 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 1.00 7.42 -51.93 -0.39 0.61 16 33 H 0.06 0.80 7.03 -51.92 -0.36 0.43 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.40 3.26 7.45 -40.82 -0.30 2.95 16 37 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16 38 H 0.07 0.73 7.28 -51.93 -0.38 0.35 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 351.19 15.07 5.29 5.29 Total: -1.00 -30.97 351.19 -6.46 -37.43 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.47 Total: -0.26 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.29 Total: 3.84 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.20 Total: -48.10 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.15 Total: -6.77 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.97 -6.46 -37.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107414104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.858 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds