Wall clock time and date at job start Tue Mar 31 2020 20:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46870 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47033 * 299.99763 * 3 2 1 6 6 H 1.48500 * 109.47002 * 59.99996 * 3 2 1 7 7 C 1.38807 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00598 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.46738 * 125.25162 * 359.96814 * 9 7 2 11 11 C 1.54085 * 106.53924 * 161.26156 * 10 9 7 12 12 C 1.53862 * 103.73407 * 28.07149 * 11 10 9 13 13 C 1.52996 * 111.26295 * 93.95054 * 12 11 10 14 14 N 1.46498 * 109.47059 * 61.00921 * 13 12 11 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 12 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 H 1.09006 * 109.46655 * 15.00327 * 17 15 14 19 19 F 1.39899 * 109.47027 * 255.00737 * 17 15 14 20 20 C 1.52995 * 109.47113 * 135.00030 * 17 15 14 21 21 F 1.39898 * 109.47166 * 60.00502 * 20 17 15 22 22 F 1.39899 * 109.46955 * 180.02562 * 20 17 15 23 23 F 1.39899 * 109.47561 * 299.99879 * 20 17 15 24 24 C 1.53364 * 110.28296 * 217.86792 * 12 11 10 25 25 C 1.55544 * 105.83594 * 118.03246 * 24 12 11 26 26 C 1.54684 * 104.34930 * 334.35722 * 25 24 12 27 27 C 1.46898 * 125.24944 * 180.02562 * 9 7 2 28 28 H 1.08994 * 111.84009 * 58.48696 * 27 9 7 29 29 H 0.97003 * 120.00135 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.03813 * 41.99901 * 10 9 7 31 31 H 1.08997 * 110.04465 * 280.53516 * 10 9 7 32 32 H 1.08998 * 110.57514 * 269.50160 * 11 10 9 33 33 H 1.09008 * 110.69406 * 146.68988 * 11 10 9 34 34 H 1.09004 * 109.47066 * 301.01189 * 13 12 11 35 35 H 1.08994 * 109.46974 * 181.01337 * 13 12 11 36 36 H 0.97001 * 120.00384 * 0.02562 * 14 13 12 37 37 H 1.08997 * 110.05777 * 238.03527 * 24 12 11 38 38 H 1.08998 * 110.05584 * 359.54028 * 24 12 11 39 39 H 1.08994 * 110.54335 * 215.54569 * 25 24 12 40 40 H 1.08997 * 110.34786 * 93.06916 * 25 24 12 41 41 H 1.08998 * 110.61444 * 278.64685 * 26 25 24 42 42 H 1.09001 * 110.61527 * 155.66324 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1357 -2.5223 0.0007 11 6 -0.4446 -3.9553 -0.4739 12 6 0.7943 -4.7584 -0.0411 13 6 0.5830 -5.4102 1.3269 14 7 -0.5485 -6.3379 1.2562 15 6 -0.9177 -7.0349 2.3491 16 8 -0.3164 -6.8901 3.3924 17 6 -2.0778 -7.9939 2.2750 18 1 -2.3183 -8.1931 1.2306 19 9 -3.1897 -7.4308 2.9103 20 6 -1.7019 -9.3038 2.9704 21 9 -1.3932 -9.0482 4.3108 22 9 -2.7786 -10.1943 2.9010 23 9 -0.5900 -9.8669 2.3350 24 6 1.1486 -5.8041 -1.1056 25 6 2.5706 -5.4292 -1.6123 26 6 2.6845 -3.9099 -1.3450 27 6 1.9404 -3.7221 0.0016 28 1 2.5898 -3.8685 0.8647 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5774 -1.7986 -0.6845 31 1 -0.5248 -2.3701 1.0074 32 1 -0.5602 -3.9835 -1.5574 33 1 -1.3399 -4.3387 0.0158 34 1 0.3748 -4.6389 2.0685 35 1 1.4826 -5.9553 1.6124 36 1 -1.0293 -6.4539 0.4218 37 1 1.1408 -6.8018 -0.6667 38 1 0.4385 -5.7527 -1.9309 39 1 2.6641 -5.6374 -2.6780 40 1 3.3291 -5.9736 -1.0499 41 1 2.1945 -3.3432 -2.1367 42 1 3.7294 -3.6141 -1.2504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107414104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:03 Heat of formation + Delta-G solvation = -229.789743 kcal Electronic energy + Delta-G solvation = -30921.342834 eV Core-core repulsion = 26014.577483 eV Total energy + Delta-G solvation = -4906.765351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.44776 -49.54752 -48.83136 -48.68692 -41.48386 -40.32585 -36.46701 -35.53452 -33.50068 -32.66105 -31.70860 -29.28570 -28.32520 -26.34658 -25.70095 -24.80403 -22.52201 -21.72121 -21.28074 -20.33914 -19.95976 -19.74619 -19.38457 -18.85851 -18.44102 -17.68847 -16.86558 -16.76187 -16.49328 -16.25246 -15.83373 -15.67915 -15.58006 -15.50030 -15.32714 -15.21745 -15.07998 -14.94393 -14.91382 -14.55200 -14.38048 -14.14663 -14.06022 -13.44966 -13.23247 -12.92424 -12.86571 -12.71732 -12.62796 -12.41769 -11.97845 -11.85178 -11.62545 -11.60292 -11.43632 -11.35225 -11.18477 -11.03383 -10.68052 -10.32983 -8.81925 -7.77009 -5.16750 0.79781 1.11513 1.45089 1.46125 1.55598 1.62155 2.26476 2.50114 2.68230 2.74773 3.12225 3.34074 3.35941 3.52045 3.66129 3.68372 3.71530 3.96991 4.26186 4.37718 4.45899 4.54805 4.58419 4.67173 4.71024 4.88341 4.95874 5.02003 5.12676 5.17838 5.21261 5.33806 5.42344 5.46945 5.54703 5.64141 5.73833 5.88962 6.12058 6.32869 6.78614 7.16104 7.86242 8.46201 9.26671 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.002936 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.710915 B = 9535.270058 C =10242.453833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.615 5.615 10 C 0.165 3.835 11 C -0.118 4.118 12 C -0.068 4.068 13 C 0.147 3.853 14 N -0.683 5.683 15 C 0.487 3.513 16 O -0.544 6.544 17 C 0.048 3.952 18 H 0.206 0.794 19 F -0.162 7.162 20 C 0.446 3.554 21 F -0.176 7.176 22 F -0.164 7.164 23 F -0.165 7.165 24 C -0.103 4.103 25 C -0.113 4.113 26 C -0.126 4.126 27 C 0.156 3.844 28 H 0.037 0.963 29 H 0.243 0.757 30 H 0.056 0.944 31 H -0.028 1.028 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.424 0.576 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.207 -22.266 -3.051 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.225 1.225 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.339 5.339 10 C 0.040 3.960 11 C -0.156 4.156 12 C -0.069 4.069 13 C 0.024 3.976 14 N -0.336 5.336 15 C 0.269 3.731 16 O -0.421 6.421 17 C 0.007 3.993 18 H 0.222 0.778 19 F -0.142 7.142 20 C 0.390 3.610 21 F -0.158 7.158 22 F -0.145 7.145 23 F -0.146 7.146 24 C -0.140 4.140 25 C -0.151 4.151 26 C -0.165 4.165 27 C 0.050 3.950 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.074 0.926 31 H -0.010 1.010 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.263 0.737 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.820 -21.947 -2.276 22.393 hybrid contribution 0.118 1.548 0.384 1.599 sum -3.703 -20.399 -1.892 20.819 Atomic orbital electron populations 1.70135 1.06047 1.24626 1.59125 1.25529 0.96534 1.00670 1.03293 0.85102 0.78212 0.80078 0.76549 1.19225 1.21865 1.22489 1.19389 0.90824 0.83830 1.41488 0.90485 1.44611 1.02267 1.00738 1.86283 1.21206 0.84080 0.94363 0.96337 1.22671 0.96730 0.94913 1.01300 1.21778 0.95811 0.95188 0.94164 1.21233 0.88560 0.91023 0.96795 1.45766 1.33547 1.41344 1.12942 1.20505 0.85183 0.82723 0.84674 1.90858 1.55068 1.65766 1.30419 1.22941 0.84652 0.88839 1.02859 0.77761 1.93019 1.51385 1.85595 1.84224 1.20471 0.75638 0.86703 0.78149 1.93278 1.92963 1.94024 1.35495 1.93265 1.54888 1.70269 1.96073 1.93254 1.53452 1.86446 1.81477 1.22405 0.97432 0.97277 0.96897 1.22480 0.97148 0.93854 1.01590 1.22829 0.99115 0.97064 0.97533 1.21838 0.93328 0.84190 0.95676 0.94555 0.94681 0.92579 1.00960 0.90349 0.90056 0.94042 0.90285 0.73652 0.89092 0.89589 0.90372 0.90953 0.93298 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.41 10.14 21.65 0.22 -56.19 16 2 C -0.07 -3.83 5.48 84.86 0.47 -3.37 16 3 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 7 C -0.23 -12.39 9.96 84.03 0.84 -11.55 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.61 -30.02 2.99 -667.68 -1.99 -32.02 16 10 C 0.17 7.78 5.65 86.70 0.49 8.27 16 11 C -0.12 -3.65 5.77 31.25 0.18 -3.47 16 12 C -0.07 -1.86 0.53 -51.23 -0.03 -1.89 16 13 C 0.15 3.91 4.43 86.38 0.38 4.30 16 14 N -0.68 -12.84 4.65 -463.07 -2.15 -15.00 16 15 C 0.49 10.84 6.91 87.66 0.61 11.44 16 16 O -0.54 -17.65 15.60 -3.04 -0.05 -17.69 16 17 C 0.05 0.70 3.78 29.85 0.11 0.82 16 18 H 0.21 0.51 8.00 -2.38 -0.02 0.50 16 19 F -0.16 -3.13 17.03 44.97 0.77 -2.36 16 20 C 0.45 7.99 2.86 71.98 0.21 8.19 16 21 F -0.18 -4.43 15.95 44.97 0.72 -3.71 16 22 F -0.16 -2.65 17.30 44.97 0.78 -1.87 16 23 F -0.16 -2.84 17.02 44.97 0.77 -2.08 16 24 C -0.10 -1.91 5.75 31.59 0.18 -1.73 16 25 C -0.11 -2.44 6.88 32.04 0.22 -2.22 16 26 C -0.13 -4.07 6.23 31.85 0.20 -3.88 16 27 C 0.16 5.82 3.60 46.14 0.17 5.99 16 28 H 0.04 1.43 7.92 -2.39 -0.02 1.41 16 29 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.06 3.05 6.16 -2.39 -0.01 3.04 16 31 H -0.03 -1.48 8.14 -2.39 -0.02 -1.50 16 32 H 0.08 2.24 7.42 -2.39 -0.02 2.23 16 33 H 0.08 2.11 7.03 -2.38 -0.02 2.09 16 34 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.42 4.65 7.45 -92.71 -0.69 3.96 16 37 H 0.09 1.24 7.51 -2.39 -0.02 1.22 16 38 H 0.09 1.36 7.28 -2.39 -0.02 1.34 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 1.82 8.06 -2.39 -0.02 1.80 16 42 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -73.97 351.19 5.48 -68.49 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 0.38 Total: 3.61 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 4.02 Total: 10.90 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -3.93 Total: -103.20 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.05 Total: -17.69 kcal Atomic # 9 Polarization: -13.05 SS G_CDS: 3.03 Total: -10.02 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -73.97 5.48 -68.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107414104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.301 kcal (2) G-P(sol) polarization free energy of solvation -73.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds