Wall clock time and date at job start Tue Mar 31 2020 20:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99668 * 2 1 4 4 H 1.48496 * 109.47094 * 275.43323 * 3 2 1 5 5 H 1.48490 * 109.46939 * 35.43336 * 3 2 1 6 6 H 1.48502 * 109.46580 * 155.43406 * 3 2 1 7 7 C 1.38819 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99361 * 327.83042 * 7 2 1 9 9 N 1.36938 * 119.99878 * 147.83743 * 7 2 1 10 10 C 1.46498 * 119.99435 * 155.07675 * 9 7 2 11 11 H 1.08993 * 109.32764 * 20.33075 * 10 9 7 12 12 C 1.53033 * 109.32534 * 260.68311 * 10 9 7 13 13 C 1.53969 * 108.83115 * 295.32399 * 12 10 9 14 14 H 1.09003 * 113.67224 * 168.56544 * 13 12 10 15 15 C 1.55527 * 106.42299 * 293.87097 * 13 12 10 16 16 C 1.55175 * 100.35581 * 73.35171 * 15 13 12 17 17 H 1.09006 * 112.48110 * 162.67256 * 16 15 13 18 18 C 1.53006 * 109.14616 * 139.86908 * 10 9 7 19 19 N 1.47792 * 104.25166 * 40.55892 * 16 15 13 20 20 C 1.34775 * 125.85310 * 153.51686 * 19 16 15 21 21 O 1.21278 * 120.00405 * 356.04898 * 20 19 16 22 22 C 1.50698 * 119.99729 * 176.03894 * 20 19 16 23 23 C 1.53001 * 109.47001 * 186.35696 * 22 20 19 24 24 F 1.39901 * 109.47144 * 304.33118 * 23 22 20 25 25 F 1.39899 * 109.47276 * 64.33187 * 23 22 20 26 26 C 1.53005 * 109.46920 * 184.33070 * 23 22 20 27 27 F 1.39906 * 109.47020 * 176.86686 * 26 23 22 28 28 F 1.39895 * 109.47052 * 296.86515 * 26 23 22 29 29 C 1.47075 * 108.28862 * 333.53840 * 19 16 15 30 30 H 0.96991 * 120.00500 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99996 * 335.07957 * 9 7 2 32 32 H 1.09000 * 109.57491 * 175.51991 * 12 10 9 33 33 H 1.08995 * 109.57397 * 55.12796 * 12 10 9 34 34 H 1.08996 * 111.23011 * 315.58126 * 15 13 12 35 35 H 1.08996 * 111.28346 * 191.15005 * 15 13 12 36 36 H 1.09006 * 109.52900 * 305.20572 * 18 10 9 37 37 H 1.09001 * 109.53677 * 184.97335 * 18 10 9 38 38 H 1.08996 * 109.47578 * 306.35623 * 22 20 19 39 39 H 1.08997 * 109.47141 * 66.35997 * 22 20 19 40 40 H 1.08998 * 109.46871 * 56.87161 * 26 23 22 41 41 H 1.09006 * 109.97855 * 120.45447 * 29 19 16 42 42 H 1.08996 * 109.97912 * 241.69833 * 29 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3828 2.1128 -1.3937 5 1 1.5096 2.6168 0.8117 6 1 3.6003 1.4098 0.5821 7 6 2.0103 -1.2022 -0.0005 8 1 1.5946 -2.0659 0.4971 9 7 3.2221 -1.2928 -0.6319 10 6 4.1931 -2.3058 -0.2111 11 1 3.6765 -3.0974 0.3314 12 6 5.2341 -1.6595 0.7057 13 6 6.0306 -0.6189 -0.1026 14 1 6.6565 0.0275 0.5127 15 6 6.8339 -1.4134 -1.1714 16 6 5.6917 -1.8013 -2.1475 17 1 6.0646 -2.1075 -3.1249 18 6 4.8687 -2.8983 -1.4495 19 7 4.8476 -0.5902 -2.2195 20 6 4.0612 -0.2365 -3.2553 21 8 4.0589 -0.9013 -4.2696 22 6 3.1846 0.9850 -3.1530 23 6 2.2853 1.0721 -4.3877 24 9 3.0758 1.0627 -5.5420 25 9 1.4153 -0.0232 -4.4093 26 6 1.4729 2.3677 -4.3365 27 9 0.7039 2.4822 -5.4996 28 9 0.6299 2.3457 -3.2203 29 6 5.0134 0.1630 -0.9671 30 1 -0.4850 0.8399 0.0004 31 1 3.4374 -0.6863 -1.3576 32 1 5.9119 -2.4243 1.0848 33 1 4.7319 -1.1682 1.5391 34 1 7.3000 -2.2981 -0.7377 35 1 7.5740 -0.7806 -1.6612 36 1 4.1087 -3.2749 -2.1341 37 1 5.5276 -3.7135 -1.1504 38 1 2.5667 0.9149 -2.2578 39 1 3.8090 1.8765 -3.0946 40 1 2.1503 3.2186 -4.2636 41 1 5.3959 1.1612 -1.1807 42 1 4.0587 0.2340 -0.4461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108765928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:07 Heat of formation + Delta-G solvation = -118.283454 kcal Electronic energy + Delta-G solvation = -33646.210196 eV Core-core repulsion = 28744.280120 eV Total energy + Delta-G solvation = -4901.930075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.65663 -48.39146 -47.29567 -46.74673 -41.61851 -38.29755 -34.34785 -33.64608 -32.40305 -31.51530 -31.06940 -28.41295 -27.48418 -25.55902 -23.40932 -22.88053 -21.67433 -21.26158 -19.92999 -19.10285 -18.35213 -18.30106 -17.78699 -17.52228 -16.83650 -16.52666 -16.05745 -15.23777 -15.15589 -14.84971 -14.44860 -14.23217 -14.08525 -13.96005 -13.77743 -13.59101 -13.49126 -13.31642 -13.18649 -12.92062 -12.85744 -12.60585 -12.31911 -12.27541 -12.25732 -12.07815 -11.97913 -11.73047 -11.41771 -11.13226 -10.98402 -10.75434 -10.27039 -10.24590 -9.98585 -9.68229 -9.60684 -9.41352 -8.62803 -8.30995 -7.06820 -6.06853 -3.27898 2.59364 2.74160 2.94141 3.09101 3.22911 3.32233 3.68193 3.80057 3.97098 4.04480 4.36338 4.48977 4.66071 4.71277 4.84513 4.92116 4.94222 5.12146 5.26971 5.30171 5.41984 5.46650 5.55755 5.56700 5.60777 5.77116 5.83496 5.86265 6.02631 6.09820 6.23316 6.34340 6.37603 6.48580 6.57175 6.71188 6.90251 7.60015 8.02025 8.21480 8.24305 9.10751 9.75455 10.06652 11.10364 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.006886 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.986809 B = 4065.158923 C = 5211.380353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.027 3.973 3 Si 0.799 3.201 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.256 1.256 7 C -0.267 4.267 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.167 3.833 11 H 0.067 0.933 12 C -0.134 4.134 13 C -0.090 4.090 14 H 0.093 0.907 15 C -0.128 4.128 16 C 0.135 3.865 17 H 0.096 0.904 18 C -0.140 4.140 19 N -0.599 5.599 20 C 0.541 3.459 21 O -0.522 6.522 22 C -0.220 4.220 23 C 0.275 3.725 24 F -0.170 7.170 25 F -0.162 7.162 26 C 0.234 3.766 27 F -0.185 7.185 28 F -0.168 7.168 29 C 0.030 3.970 30 H 0.264 0.736 31 H 0.374 0.626 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.158 0.842 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.047 0.953 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.406 3.957 -3.260 13.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.173 4.173 3 Si 0.628 3.372 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.182 1.182 7 C -0.397 4.397 8 H 0.097 0.903 9 N -0.397 5.397 10 C 0.057 3.943 11 H 0.085 0.915 12 C -0.174 4.174 13 C -0.109 4.109 14 H 0.111 0.889 15 C -0.166 4.166 16 C 0.033 3.967 17 H 0.114 0.886 18 C -0.180 4.180 19 N -0.336 5.336 20 C 0.329 3.671 21 O -0.398 6.398 22 C -0.260 4.260 23 C 0.237 3.763 24 F -0.151 7.151 25 F -0.143 7.143 26 C 0.179 3.821 27 F -0.166 7.166 28 F -0.149 7.149 29 C -0.092 4.092 30 H 0.074 0.926 31 H 0.222 0.778 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.175 0.825 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.066 0.934 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.057 3.554 -3.790 13.128 hybrid contribution 0.310 1.281 -0.087 1.321 sum 12.367 4.835 -3.877 13.833 Atomic orbital electron populations 1.69968 1.05555 1.26544 1.50099 1.25211 0.94992 0.96585 1.00469 0.88393 0.81675 0.88695 0.78446 1.19700 1.21777 1.18178 1.19089 0.93407 0.95922 1.31303 0.90286 1.44628 1.15519 1.40298 1.39263 1.20379 0.89489 0.92442 0.91948 0.91509 1.22392 0.98218 0.97677 0.99127 1.22490 0.95386 0.96869 0.96126 0.88873 1.23090 0.96313 1.00654 0.96579 1.22301 0.90077 0.85384 0.98953 0.88573 1.22461 0.99582 0.96936 0.98972 1.48659 1.43621 1.24873 1.16418 1.19340 0.79793 0.85624 0.82355 1.90753 1.66188 1.54040 1.28845 1.23689 1.00566 1.00739 1.00980 1.21441 0.84461 0.85503 0.84912 1.93092 1.74326 1.96609 1.51090 1.93170 1.69342 1.55173 1.96601 1.22757 0.87094 0.98963 0.73247 1.93054 1.77780 1.96939 1.48787 1.93157 1.73091 1.97334 1.51302 1.24147 1.06422 0.93560 0.85039 0.92556 0.77783 0.92370 0.91107 0.89535 0.91338 0.91149 0.91061 0.82508 0.85768 0.84466 0.93450 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 13.97 55.49 0.78 -25.19 16 2 C 0.03 0.74 5.45 -17.43 -0.09 0.64 16 3 Si 0.80 18.07 23.80 -169.99 -4.05 14.03 16 4 H -0.27 -5.31 4.01 56.52 0.23 -5.09 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -5.35 5.61 56.52 0.32 -5.03 16 7 C -0.27 -7.13 10.14 -15.06 -0.15 -7.28 16 8 H 0.08 2.28 8.01 -52.49 -0.42 1.86 16 9 N -0.74 -16.64 2.90 -53.41 -0.15 -16.79 16 10 C 0.17 3.06 3.14 -67.91 -0.21 2.84 16 11 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 12 C -0.13 -2.05 5.37 -26.21 -0.14 -2.19 16 13 C -0.09 -1.25 4.34 -87.87 -0.38 -1.63 16 14 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 15 C -0.13 -1.54 6.18 -24.24 -0.15 -1.69 16 16 C 0.14 2.08 4.00 -65.61 -0.26 1.81 16 17 H 0.10 1.45 7.99 -51.93 -0.42 1.03 16 18 C -0.14 -2.26 5.49 -26.27 -0.14 -2.40 16 19 N -0.60 -10.71 1.79 -161.82 -0.29 -11.00 16 20 C 0.54 10.75 6.56 -10.99 -0.07 10.67 16 21 O -0.52 -11.58 15.07 5.56 0.08 -11.50 16 22 C -0.22 -4.04 3.07 -27.88 -0.09 -4.12 16 23 C 0.28 5.07 1.41 -26.73 -0.04 5.03 16 24 F -0.17 -3.06 15.66 2.25 0.04 -3.03 16 25 F -0.16 -3.61 16.51 2.25 0.04 -3.57 16 26 C 0.23 3.62 4.82 37.16 0.18 3.80 16 27 F -0.18 -2.94 17.28 2.25 0.04 -2.90 16 28 F -0.17 -3.11 16.44 2.25 0.04 -3.07 16 29 C 0.03 0.50 3.90 -2.83 -0.01 0.49 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.37 8.07 1.05 -70.09 -0.07 8.00 16 32 H 0.06 0.73 7.98 -51.93 -0.41 0.31 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.09 0.86 7.75 -51.93 -0.40 0.46 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 0.91 8.00 -51.93 -0.42 0.50 16 38 H 0.16 3.29 2.57 -51.93 -0.13 3.16 16 39 H 0.12 1.71 8.13 -51.93 -0.42 1.29 16 40 H 0.14 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.15 3.00 0.76 -58.56 -0.04 2.96 16 LS Contribution 321.35 15.07 4.84 4.84 Total: -1.00 -32.16 321.35 -5.29 -37.45 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -5.08 Total: 14.76 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -1.57 Total: 5.97 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.33 Total: -52.98 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 9 Polarization: -12.72 SS G_CDS: 0.15 Total: -12.57 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -4.05 Total: 14.03 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.16 -5.29 -37.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108765928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.834 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds