Wall clock time and date at job start Tue Mar 31 2020 20:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99668 * 2 1 4 4 H 1.48496 * 109.47094 * 275.43323 * 3 2 1 5 5 H 1.48490 * 109.46939 * 35.43336 * 3 2 1 6 6 H 1.48502 * 109.46580 * 155.43406 * 3 2 1 7 7 C 1.38819 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99361 * 327.83042 * 7 2 1 9 9 N 1.36938 * 119.99878 * 147.83743 * 7 2 1 10 10 C 1.46498 * 119.99435 * 155.07675 * 9 7 2 11 11 H 1.08993 * 109.32764 * 20.33075 * 10 9 7 12 12 C 1.53033 * 109.32534 * 260.68311 * 10 9 7 13 13 C 1.53969 * 108.83115 * 295.32399 * 12 10 9 14 14 H 1.09003 * 113.67224 * 168.56544 * 13 12 10 15 15 C 1.55527 * 106.42299 * 293.87097 * 13 12 10 16 16 C 1.55175 * 100.35581 * 73.35171 * 15 13 12 17 17 H 1.09006 * 112.48110 * 162.67256 * 16 15 13 18 18 C 1.53006 * 109.14616 * 139.86908 * 10 9 7 19 19 N 1.47792 * 104.25166 * 40.55892 * 16 15 13 20 20 C 1.34775 * 125.85310 * 153.51686 * 19 16 15 21 21 O 1.21278 * 120.00405 * 356.04898 * 20 19 16 22 22 C 1.50698 * 119.99729 * 176.03894 * 20 19 16 23 23 C 1.53001 * 109.47001 * 186.35696 * 22 20 19 24 24 F 1.39901 * 109.47144 * 304.33118 * 23 22 20 25 25 F 1.39899 * 109.47276 * 64.33187 * 23 22 20 26 26 C 1.53005 * 109.46920 * 184.33070 * 23 22 20 27 27 F 1.39906 * 109.47020 * 176.86686 * 26 23 22 28 28 F 1.39895 * 109.47052 * 296.86515 * 26 23 22 29 29 C 1.47075 * 108.28862 * 333.53840 * 19 16 15 30 30 H 0.96991 * 120.00500 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99996 * 335.07957 * 9 7 2 32 32 H 1.09000 * 109.57491 * 175.51991 * 12 10 9 33 33 H 1.08995 * 109.57397 * 55.12796 * 12 10 9 34 34 H 1.08996 * 111.23011 * 315.58126 * 15 13 12 35 35 H 1.08996 * 111.28346 * 191.15005 * 15 13 12 36 36 H 1.09006 * 109.52900 * 305.20572 * 18 10 9 37 37 H 1.09001 * 109.53677 * 184.97335 * 18 10 9 38 38 H 1.08996 * 109.47578 * 306.35623 * 22 20 19 39 39 H 1.08997 * 109.47141 * 66.35997 * 22 20 19 40 40 H 1.08998 * 109.46871 * 56.87161 * 26 23 22 41 41 H 1.09006 * 109.97855 * 120.45447 * 29 19 16 42 42 H 1.08996 * 109.97912 * 241.69833 * 29 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3828 2.1128 -1.3937 5 1 1.5096 2.6168 0.8117 6 1 3.6003 1.4098 0.5821 7 6 2.0103 -1.2022 -0.0005 8 1 1.5946 -2.0659 0.4971 9 7 3.2221 -1.2928 -0.6319 10 6 4.1931 -2.3058 -0.2111 11 1 3.6765 -3.0974 0.3314 12 6 5.2341 -1.6595 0.7057 13 6 6.0306 -0.6189 -0.1026 14 1 6.6565 0.0275 0.5127 15 6 6.8339 -1.4134 -1.1714 16 6 5.6917 -1.8013 -2.1475 17 1 6.0646 -2.1075 -3.1249 18 6 4.8687 -2.8983 -1.4495 19 7 4.8476 -0.5902 -2.2195 20 6 4.0612 -0.2365 -3.2553 21 8 4.0589 -0.9013 -4.2696 22 6 3.1846 0.9850 -3.1530 23 6 2.2853 1.0721 -4.3877 24 9 3.0758 1.0627 -5.5420 25 9 1.4153 -0.0232 -4.4093 26 6 1.4729 2.3677 -4.3365 27 9 0.7039 2.4822 -5.4996 28 9 0.6299 2.3457 -3.2203 29 6 5.0134 0.1630 -0.9671 30 1 -0.4850 0.8399 0.0004 31 1 3.4374 -0.6863 -1.3576 32 1 5.9119 -2.4243 1.0848 33 1 4.7319 -1.1682 1.5391 34 1 7.3000 -2.2981 -0.7377 35 1 7.5740 -0.7806 -1.6612 36 1 4.1087 -3.2749 -2.1341 37 1 5.5276 -3.7135 -1.1504 38 1 2.5667 0.9149 -2.2578 39 1 3.8090 1.8765 -3.0946 40 1 2.1503 3.2186 -4.2636 41 1 5.3959 1.1612 -1.1807 42 1 4.0587 0.2340 -0.4461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108765928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:06 Heat of formation + Delta-G solvation = -139.859469 kcal Electronic energy + Delta-G solvation = -33647.145802 eV Core-core repulsion = 28744.280120 eV Total energy + Delta-G solvation = -4902.865682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.01278 -49.76678 -48.66275 -48.17430 -42.93925 -39.75164 -36.03559 -35.06288 -33.86104 -33.22853 -32.35009 -29.87448 -28.76827 -26.88801 -25.18996 -24.17850 -22.98144 -22.63635 -21.23166 -20.50725 -19.75902 -19.66425 -19.43040 -18.81675 -18.23894 -17.89357 -17.44889 -16.82229 -16.79261 -16.19668 -15.95506 -15.67877 -15.62609 -15.30547 -15.25755 -15.02468 -14.75839 -14.73547 -14.70580 -14.36573 -14.20739 -13.94653 -13.88866 -13.69632 -13.51195 -13.46722 -13.26233 -13.07285 -12.80543 -12.60812 -12.45696 -12.15483 -11.85572 -11.64707 -11.34616 -11.18650 -11.13923 -10.78515 -10.52503 -9.72608 -8.88132 -8.14560 -5.33940 1.11401 1.22726 1.37132 1.43261 1.51309 1.79906 2.31424 2.43772 2.61764 2.70052 2.79465 3.08358 3.25790 3.50942 3.53178 3.57675 3.69721 3.74902 3.93061 4.01965 4.11357 4.13840 4.26101 4.36352 4.41541 4.55668 4.73391 4.77241 4.84548 4.98946 5.02261 5.09385 5.22722 5.27481 5.36367 5.38361 5.62296 5.92649 6.16293 6.23714 6.78162 7.13189 7.87535 8.14664 9.06431 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.006886 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.986809 B = 4065.158923 C = 5211.380353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.038 4.038 3 Si 0.872 3.128 4 H -0.224 1.224 5 H -0.311 1.311 6 H -0.221 1.221 7 C -0.270 4.270 8 H 0.028 0.972 9 N -0.746 5.746 10 C 0.154 3.846 11 H 0.040 0.960 12 C -0.127 4.127 13 C -0.083 4.083 14 H 0.131 0.869 15 C -0.107 4.107 16 C 0.123 3.877 17 H 0.097 0.903 18 C -0.135 4.135 19 N -0.598 5.598 20 C 0.529 3.471 21 O -0.560 6.560 22 C -0.224 4.224 23 C 0.260 3.740 24 F -0.169 7.169 25 F -0.198 7.198 26 C 0.235 3.765 27 F -0.190 7.190 28 F -0.189 7.189 29 C 0.014 3.986 30 H 0.260 0.740 31 H 0.379 0.621 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.028 0.972 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.178 0.822 40 H 0.207 0.793 41 H 0.081 0.919 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.340 6.381 -3.208 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.233 4.233 3 Si 0.698 3.302 4 H -0.150 1.150 5 H -0.240 1.240 6 H -0.144 1.144 7 C -0.402 4.402 8 H 0.045 0.955 9 N -0.404 5.404 10 C 0.047 3.953 11 H 0.059 0.941 12 C -0.166 4.166 13 C -0.101 4.101 14 H 0.149 0.851 15 C -0.145 4.145 16 C 0.022 3.978 17 H 0.115 0.885 18 C -0.174 4.174 19 N -0.333 5.333 20 C 0.318 3.682 21 O -0.439 6.439 22 C -0.263 4.263 23 C 0.222 3.778 24 F -0.149 7.149 25 F -0.179 7.179 26 C 0.181 3.819 27 F -0.171 7.171 28 F -0.170 7.170 29 C -0.107 4.107 30 H 0.068 0.932 31 H 0.230 0.770 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.047 0.953 37 H 0.129 0.871 38 H 0.149 0.851 39 H 0.196 0.804 40 H 0.224 0.776 41 H 0.100 0.900 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.071 5.966 -3.729 18.464 hybrid contribution -1.296 0.311 -0.132 1.339 sum 15.775 6.277 -3.861 17.411 Atomic orbital electron populations 1.70153 1.08040 1.27261 1.53269 1.25884 0.95616 1.01148 1.00679 0.87307 0.80966 0.81301 0.80665 1.14996 1.23954 1.14447 1.18943 0.95196 0.94699 1.31323 0.95457 1.44660 1.14892 1.41398 1.39466 1.20614 0.89887 0.91256 0.93593 0.94147 1.22256 0.97699 0.98955 0.97696 1.22612 0.94880 0.96546 0.96099 0.85117 1.23089 0.94875 1.01962 0.94572 1.22577 0.90986 0.84192 1.00086 0.88462 1.22412 0.99291 0.98580 0.97091 1.48830 1.42926 1.25542 1.16026 1.19698 0.80089 0.85945 0.82507 1.90728 1.67474 1.55213 1.30475 1.23782 1.00527 1.02600 0.99402 1.21969 0.84720 0.85920 0.85179 1.93084 1.74290 1.96619 1.50952 1.93095 1.70566 1.57430 1.96772 1.23348 0.87146 0.99230 0.72210 1.93041 1.78087 1.96852 1.49090 1.93118 1.73990 1.97377 1.52540 1.24188 1.05801 0.95917 0.84786 0.93161 0.77047 0.88667 0.93170 0.86527 0.88825 0.95345 0.87091 0.85141 0.80417 0.77640 0.90037 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.25 13.97 21.65 0.30 -58.95 16 2 C -0.04 -2.14 5.45 84.86 0.46 -1.68 16 3 Si 0.87 37.61 23.80 68.60 1.63 39.24 16 4 H -0.22 -7.97 4.01 99.48 0.40 -7.57 16 5 H -0.31 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.22 -8.21 5.61 99.48 0.56 -7.65 16 7 C -0.27 -15.33 10.14 84.03 0.85 -14.47 16 8 H 0.03 1.76 8.01 -2.91 -0.02 1.74 16 9 N -0.75 -34.08 2.90 -322.89 -0.94 -35.02 16 10 C 0.15 5.63 3.14 45.00 0.14 5.77 16 11 H 0.04 1.63 7.93 -2.39 -0.02 1.61 16 12 C -0.13 -3.43 5.37 30.93 0.17 -3.26 16 13 C -0.08 -1.81 4.34 -9.01 -0.04 -1.85 16 14 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 15 C -0.11 -1.88 6.18 32.21 0.20 -1.68 16 16 C 0.12 3.39 4.00 45.79 0.18 3.57 16 17 H 0.10 2.67 7.99 -2.38 -0.02 2.65 16 18 C -0.13 -4.18 5.49 30.89 0.17 -4.01 16 19 N -0.60 -19.63 1.79 -784.26 -1.41 -21.04 16 20 C 0.53 20.18 6.56 87.66 0.57 20.76 16 21 O -0.56 -24.82 15.07 -3.02 -0.05 -24.86 16 22 C -0.22 -7.62 3.07 29.85 0.09 -7.53 16 23 C 0.26 9.24 1.41 30.60 0.04 9.28 16 24 F -0.17 -5.81 15.66 44.97 0.70 -5.10 16 25 F -0.20 -9.11 16.51 44.97 0.74 -8.37 16 26 C 0.23 6.62 4.82 71.98 0.35 6.97 16 27 F -0.19 -5.74 17.28 44.97 0.78 -4.96 16 28 F -0.19 -6.76 16.44 44.97 0.74 -6.02 16 29 C 0.01 0.41 3.90 86.85 0.34 0.75 16 30 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.38 16.18 1.05 -150.49 -0.16 16.02 16 32 H 0.09 1.89 7.98 -2.39 -0.02 1.87 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.12 1.44 7.75 -2.39 -0.02 1.42 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.11 2.51 8.00 -2.39 -0.02 2.49 16 38 H 0.13 5.22 2.57 -2.39 -0.01 5.22 16 39 H 0.18 3.89 8.13 -2.39 -0.02 3.87 16 40 H 0.21 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.12 4.27 0.76 -15.48 -0.01 4.26 16 Total: -1.00 -81.22 321.35 6.50 -74.72 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: 0.46 Total: 37.75 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 3.53 Total: 12.62 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -2.04 Total: -115.01 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.05 Total: -24.86 kcal Atomic # 9 Polarization: -27.42 SS G_CDS: 2.96 Total: -24.45 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 1.63 Total: 39.24 kcal Total: -81.22 6.50 -74.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108765928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.140 kcal (2) G-P(sol) polarization free energy of solvation -81.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds