Wall clock time and date at job start Tue Mar 31 2020 20:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 119.99964 * 2 1 4 4 H 1.48498 * 109.46978 * 270.00174 * 3 2 1 5 5 H 1.48504 * 109.46846 * 30.00255 * 3 2 1 6 6 H 1.48500 * 109.46801 * 150.00016 * 3 2 1 7 7 C 1.38811 * 120.00630 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00728 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99609 * 359.97438 * 7 2 1 10 10 C 1.47218 * 126.70120 * 359.97438 * 9 7 2 11 11 C 1.53776 * 106.37951 * 211.27903 * 10 9 7 12 12 H 1.08993 * 111.71026 * 218.84131 * 11 10 9 13 13 C 1.54325 * 109.06055 * 94.89174 * 11 10 9 14 14 C 1.55057 * 103.93854 * 221.16515 * 13 11 10 15 15 C 1.55062 * 102.10704 * 40.05601 * 14 13 11 16 16 C 1.54321 * 103.93547 * 319.94498 * 15 14 13 17 17 N 1.46494 * 112.36134 * 262.38610 * 16 15 14 18 18 C 1.34777 * 120.00191 * 299.34679 * 17 16 15 19 19 O 1.21277 * 120.00028 * 359.97438 * 18 17 16 20 20 C 1.50706 * 120.00107 * 179.97438 * 18 17 16 21 21 C 1.53003 * 109.46930 * 179.97438 * 20 18 17 22 22 F 1.39898 * 109.47169 * 299.99581 * 21 20 18 23 23 F 1.39897 * 109.47223 * 59.99897 * 21 20 18 24 24 C 1.53005 * 109.46675 * 180.02562 * 21 20 18 25 25 F 1.39897 * 109.47436 * 59.99959 * 24 21 20 26 26 F 1.39903 * 109.46832 * 180.02562 * 24 21 20 27 27 C 1.47214 * 126.70276 * 179.97438 * 9 7 2 28 28 H 0.96994 * 120.00102 * 359.97438 * 1 2 3 29 29 H 1.08999 * 110.07233 * 92.05011 * 10 9 7 30 30 H 1.09003 * 110.12180 * 330.53650 * 10 9 7 31 31 H 1.09003 * 110.53411 * 102.55747 * 13 11 10 32 32 H 1.08996 * 110.53951 * 339.77683 * 13 11 10 33 33 H 1.08996 * 110.91011 * 158.25676 * 14 13 11 34 34 H 1.09004 * 110.90322 * 281.86268 * 14 13 11 35 35 H 1.09002 * 110.53048 * 78.55586 * 15 14 13 36 36 H 1.08994 * 110.53668 * 201.32834 * 15 14 13 37 37 H 0.96998 * 120.00205 * 119.33970 * 17 16 15 38 38 H 1.08995 * 109.46643 * 299.99647 * 20 18 17 39 39 H 1.08994 * 109.47147 * 59.99664 * 20 18 17 40 40 H 1.09007 * 109.46622 * 299.99329 * 24 21 20 41 41 H 1.08996 * 110.07042 * 267.94622 * 27 9 7 42 42 H 1.08990 * 110.07290 * 29.49020 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1364 -2.5599 0.0005 11 6 -0.4193 -3.8631 0.7662 12 1 -1.2292 -4.4316 0.3091 13 6 -0.7212 -3.5255 2.2415 14 6 0.0251 -4.6276 3.0370 15 6 1.3499 -4.7615 2.2426 16 6 0.9106 -4.6568 0.7669 17 7 0.7602 -5.9702 0.1356 18 6 1.8183 -6.8003 0.0468 19 8 2.8950 -6.4599 0.4891 20 6 1.6634 -8.1517 -0.6021 21 6 3.0044 -8.8879 -0.5734 22 9 3.9607 -8.1424 -1.2712 23 9 3.4179 -9.0521 0.7529 24 6 2.8472 -10.2596 -1.2328 25 9 2.4340 -10.0949 -2.5591 26 9 4.0732 -10.9330 -1.2060 27 6 1.9080 -3.7401 -0.0016 28 1 -0.4850 0.8400 0.0004 29 1 -0.5045 -2.6395 -1.0224 30 1 -0.6125 -1.7189 0.5047 31 1 -1.7931 -3.5749 2.4334 32 1 -0.3312 -2.5400 2.4958 33 1 0.2164 -4.3062 4.0608 34 1 -0.5334 -5.5635 3.0224 35 1 2.0320 -3.9502 2.4970 36 1 1.8153 -5.7281 2.4353 37 1 -0.1008 -6.2424 -0.2184 38 1 0.9180 -8.7323 -0.0587 39 1 1.3416 -8.0237 -1.6356 40 1 2.1020 -10.8406 -0.6894 41 1 2.0214 -4.0977 -1.0249 42 1 2.8747 -3.7315 0.5016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111871982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:08 Heat of formation + Delta-G solvation = -207.681403 kcal Electronic energy + Delta-G solvation = -31169.576164 eV Core-core repulsion = 26263.769503 eV Total energy + Delta-G solvation = -4905.806661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.12143 -48.85931 -47.76513 -47.22556 -40.23904 -38.24462 -34.46847 -33.61670 -32.94593 -31.41829 -29.49457 -28.48313 -27.18206 -24.65241 -24.44737 -22.88524 -21.29837 -20.57606 -19.62713 -19.01207 -18.80228 -18.53792 -18.00680 -17.18224 -17.03259 -16.48667 -16.31792 -15.62727 -15.20615 -14.77236 -14.71835 -14.48959 -14.34515 -14.02239 -13.98494 -13.84892 -13.62102 -13.50072 -13.43042 -13.23713 -13.14493 -12.83127 -12.48537 -12.42428 -11.89775 -11.32047 -11.19670 -11.05273 -10.93070 -10.70251 -10.58546 -10.32709 -10.23759 -10.11069 -10.01200 -9.95602 -9.73427 -9.54454 -8.82353 -8.64120 -6.87407 -5.65931 -3.10156 2.23448 2.59711 3.02484 3.26944 3.36399 3.40304 3.45620 3.47483 3.55439 3.69787 4.28026 4.38107 4.47377 4.63804 4.83247 4.91756 4.98884 5.12036 5.32031 5.48219 5.62220 5.79806 5.81993 5.98061 6.06849 6.09428 6.20082 6.30558 6.36529 6.52632 6.61173 6.75939 6.79694 6.93276 7.06608 7.38891 7.58882 7.61953 7.81627 8.25979 8.39252 9.20238 9.80396 10.47158 11.35555 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018778 B = 0.003071 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.716321 B = 9114.681440 C = 9758.369643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.215 4.215 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.139 3.861 11 C -0.114 4.114 12 H 0.068 0.932 13 C -0.109 4.109 14 C -0.125 4.125 15 C -0.110 4.110 16 C 0.154 3.846 17 N -0.703 5.703 18 C 0.513 3.487 19 O -0.512 6.512 20 C -0.195 4.195 21 C 0.273 3.727 22 F -0.167 7.167 23 F -0.168 7.168 24 C 0.235 3.765 25 F -0.180 7.180 26 F -0.182 7.182 27 C 0.142 3.858 28 H 0.252 0.748 29 H 0.003 0.997 30 H 0.130 0.870 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.397 0.603 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.013 0.987 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 -21.507 0.675 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.014 3.986 11 C -0.134 4.134 12 H 0.086 0.914 13 C -0.146 4.146 14 C -0.163 4.163 15 C -0.148 4.148 16 C 0.068 3.932 17 N -0.354 5.354 18 C 0.297 3.703 19 O -0.387 6.387 20 C -0.236 4.236 21 C 0.234 3.766 22 F -0.148 7.148 23 F -0.148 7.148 24 C 0.180 3.820 25 F -0.161 7.161 26 F -0.163 7.163 27 C 0.014 3.986 28 H 0.063 0.937 29 H 0.021 0.979 30 H 0.147 0.853 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.232 0.768 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.031 0.969 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.352 -20.967 0.984 21.121 hybrid contribution 0.156 0.520 -0.466 0.715 sum -2.196 -20.447 0.517 20.571 Atomic orbital electron populations 1.69576 1.04867 1.24698 1.58044 1.24750 0.95714 0.97648 1.02536 0.86044 0.78581 0.83160 0.77596 1.21646 1.21635 1.20638 1.19115 0.90559 0.82098 1.42574 0.90324 1.44428 1.01799 0.99566 1.85803 1.22042 0.85762 0.94541 0.96298 1.23034 0.94045 0.98728 0.97581 0.91350 1.22450 0.98927 0.99561 0.93699 1.22608 0.96566 0.98428 0.98655 1.22601 0.97178 1.02165 0.92876 1.22206 0.97607 0.80519 0.92883 1.45900 1.11836 1.17124 1.60530 1.19735 0.85140 0.85248 0.80188 1.90825 1.25718 1.75493 1.46622 1.22845 0.96220 0.97512 1.07017 1.21521 0.88093 0.89987 0.76972 1.93155 1.65735 1.77760 1.78147 1.93127 1.91548 1.95705 1.34447 1.22858 0.84919 0.92387 0.81801 1.93070 1.90060 1.96096 1.36924 1.93082 1.45840 1.81017 1.96408 1.21846 0.94893 0.85780 0.96043 0.93668 0.97886 0.85286 0.92521 0.90070 0.92080 0.92552 0.90257 0.91768 0.76834 0.85322 0.84949 0.83959 0.96904 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.13 10.08 55.49 0.56 -25.57 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.22 -6.00 10.34 -15.06 -0.16 -6.16 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.59 -15.09 3.39 -169.90 -0.58 -15.67 16 10 C 0.14 3.24 5.56 -3.25 -0.02 3.22 16 11 C -0.11 -2.01 3.62 -88.53 -0.32 -2.33 16 12 H 0.07 1.02 7.71 -51.93 -0.40 0.62 16 13 C -0.11 -1.81 6.22 -24.95 -0.16 -1.96 16 14 C -0.12 -1.84 6.92 -24.55 -0.17 -2.01 16 15 C -0.11 -1.88 5.57 -24.95 -0.14 -2.02 16 16 C 0.15 2.69 0.94 -128.68 -0.12 2.57 16 17 N -0.70 -9.40 5.24 -44.72 -0.23 -9.64 16 18 C 0.51 7.05 6.94 -10.98 -0.08 6.97 16 19 O -0.51 -9.38 12.91 5.56 0.07 -9.31 16 20 C -0.20 -1.63 5.18 -27.88 -0.14 -1.77 16 21 C 0.27 2.88 1.40 -26.73 -0.04 2.84 16 22 F -0.17 -2.45 16.10 2.25 0.04 -2.42 16 23 F -0.17 -2.10 16.12 2.25 0.04 -2.06 16 24 C 0.24 1.73 4.83 37.16 0.18 1.91 16 25 F -0.18 -1.49 16.80 2.25 0.04 -1.46 16 26 F -0.18 -1.83 17.30 2.25 0.04 -1.79 16 27 C 0.14 3.16 5.47 -2.19 -0.01 3.15 16 28 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.13 3.36 4.90 -51.93 -0.25 3.10 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.62 7.58 -51.93 -0.39 1.22 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.55 7.57 -51.93 -0.39 1.16 16 36 H 0.06 1.09 6.69 -51.93 -0.35 0.74 16 37 H 0.40 3.90 8.29 -40.82 -0.34 3.57 16 38 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.13 0.84 7.80 -51.93 -0.41 0.44 16 40 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.01 0.30 8.08 -51.93 -0.42 -0.11 16 42 H 0.05 1.21 7.63 -51.93 -0.40 0.81 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -33.86 348.53 -6.50 -40.36 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.43 Total: 1.30 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.27 Total: 3.99 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.25 Total: -50.88 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.15 Total: -7.72 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.86 -6.50 -40.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111871982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.325 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds