Wall clock time and date at job start Tue Mar 31 2020 20:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 119.99964 * 2 1 4 4 H 1.48498 * 109.46978 * 270.00174 * 3 2 1 5 5 H 1.48504 * 109.46846 * 30.00255 * 3 2 1 6 6 H 1.48500 * 109.46801 * 150.00016 * 3 2 1 7 7 C 1.38811 * 120.00630 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00728 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99609 * 359.97438 * 7 2 1 10 10 C 1.47218 * 126.70120 * 359.97438 * 9 7 2 11 11 C 1.53776 * 106.37951 * 211.27903 * 10 9 7 12 12 H 1.08993 * 111.71026 * 218.84131 * 11 10 9 13 13 C 1.54325 * 109.06055 * 94.89174 * 11 10 9 14 14 C 1.55057 * 103.93854 * 221.16515 * 13 11 10 15 15 C 1.55062 * 102.10704 * 40.05601 * 14 13 11 16 16 C 1.54321 * 103.93547 * 319.94498 * 15 14 13 17 17 N 1.46494 * 112.36134 * 262.38610 * 16 15 14 18 18 C 1.34777 * 120.00191 * 299.34679 * 17 16 15 19 19 O 1.21277 * 120.00028 * 359.97438 * 18 17 16 20 20 C 1.50706 * 120.00107 * 179.97438 * 18 17 16 21 21 C 1.53003 * 109.46930 * 179.97438 * 20 18 17 22 22 F 1.39898 * 109.47169 * 299.99581 * 21 20 18 23 23 F 1.39897 * 109.47223 * 59.99897 * 21 20 18 24 24 C 1.53005 * 109.46675 * 180.02562 * 21 20 18 25 25 F 1.39897 * 109.47436 * 59.99959 * 24 21 20 26 26 F 1.39903 * 109.46832 * 180.02562 * 24 21 20 27 27 C 1.47214 * 126.70276 * 179.97438 * 9 7 2 28 28 H 0.96994 * 120.00102 * 359.97438 * 1 2 3 29 29 H 1.08999 * 110.07233 * 92.05011 * 10 9 7 30 30 H 1.09003 * 110.12180 * 330.53650 * 10 9 7 31 31 H 1.09003 * 110.53411 * 102.55747 * 13 11 10 32 32 H 1.08996 * 110.53951 * 339.77683 * 13 11 10 33 33 H 1.08996 * 110.91011 * 158.25676 * 14 13 11 34 34 H 1.09004 * 110.90322 * 281.86268 * 14 13 11 35 35 H 1.09002 * 110.53048 * 78.55586 * 15 14 13 36 36 H 1.08994 * 110.53668 * 201.32834 * 15 14 13 37 37 H 0.96998 * 120.00205 * 119.33970 * 17 16 15 38 38 H 1.08995 * 109.46643 * 299.99647 * 20 18 17 39 39 H 1.08994 * 109.47147 * 59.99664 * 20 18 17 40 40 H 1.09007 * 109.46622 * 299.99329 * 24 21 20 41 41 H 1.08996 * 110.07042 * 267.94622 * 27 9 7 42 42 H 1.08990 * 110.07290 * 29.49020 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1364 -2.5599 0.0005 11 6 -0.4193 -3.8631 0.7662 12 1 -1.2292 -4.4316 0.3091 13 6 -0.7212 -3.5255 2.2415 14 6 0.0251 -4.6276 3.0370 15 6 1.3499 -4.7615 2.2426 16 6 0.9106 -4.6568 0.7669 17 7 0.7602 -5.9702 0.1356 18 6 1.8183 -6.8003 0.0468 19 8 2.8950 -6.4599 0.4891 20 6 1.6634 -8.1517 -0.6021 21 6 3.0044 -8.8879 -0.5734 22 9 3.9607 -8.1424 -1.2712 23 9 3.4179 -9.0521 0.7529 24 6 2.8472 -10.2596 -1.2328 25 9 2.4340 -10.0949 -2.5591 26 9 4.0732 -10.9330 -1.2060 27 6 1.9080 -3.7401 -0.0016 28 1 -0.4850 0.8400 0.0004 29 1 -0.5045 -2.6395 -1.0224 30 1 -0.6125 -1.7189 0.5047 31 1 -1.7931 -3.5749 2.4334 32 1 -0.3312 -2.5400 2.4958 33 1 0.2164 -4.3062 4.0608 34 1 -0.5334 -5.5635 3.0224 35 1 2.0320 -3.9502 2.4970 36 1 1.8153 -5.7281 2.4353 37 1 -0.1008 -6.2424 -0.2184 38 1 0.9180 -8.7323 -0.0587 39 1 1.3416 -8.0237 -1.6356 40 1 2.1020 -10.8406 -0.6894 41 1 2.0214 -4.0977 -1.0249 42 1 2.8747 -3.7315 0.5016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111871982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:07 Heat of formation + Delta-G solvation = -230.931992 kcal Electronic energy + Delta-G solvation = -31170.584385 eV Core-core repulsion = 26263.769503 eV Total energy + Delta-G solvation = -4906.814883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.83541 -49.60386 -48.48784 -48.04176 -41.56610 -39.60095 -36.26739 -34.81235 -33.79304 -33.36552 -31.02076 -29.76293 -28.35897 -26.29843 -26.21950 -23.73562 -22.53863 -22.22883 -20.88819 -20.37045 -19.49729 -19.40137 -19.09772 -18.62210 -17.73923 -17.51723 -17.40560 -16.95745 -16.69865 -16.27253 -15.70090 -15.52119 -15.41099 -15.14069 -15.08876 -15.03407 -14.86193 -14.64528 -14.59049 -14.55102 -14.48908 -13.91082 -13.62038 -13.33061 -13.20466 -13.09798 -12.84571 -12.73540 -12.20822 -12.08912 -12.04555 -11.88067 -11.84179 -11.73127 -11.62885 -11.59871 -11.41821 -10.87925 -10.75126 -10.07719 -8.92893 -7.78528 -5.26251 1.44433 1.45577 1.53431 1.55285 1.58508 2.09217 2.46679 2.55901 2.82644 2.95087 3.03738 3.27303 3.42658 3.65503 3.74672 3.76598 3.82263 3.85187 3.91531 4.31775 4.36467 4.40765 4.41973 4.49467 4.59580 4.73594 4.78962 4.89720 4.94557 5.04270 5.09966 5.23249 5.28242 5.40762 5.46925 5.61230 5.71732 5.82595 6.36939 6.54963 7.08669 7.26066 7.73181 8.39661 9.19734 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018778 B = 0.003071 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.716321 B = 9114.681440 C = 9758.369643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.056 4.056 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.613 5.613 10 C 0.140 3.860 11 C -0.101 4.101 12 H 0.111 0.889 13 C -0.106 4.106 14 C -0.108 4.108 15 C -0.107 4.107 16 C 0.171 3.829 17 N -0.691 5.691 18 C 0.505 3.495 19 O -0.566 6.566 20 C -0.181 4.181 21 C 0.250 3.750 22 F -0.202 7.202 23 F -0.183 7.183 24 C 0.242 3.758 25 F -0.185 7.185 26 F -0.202 7.202 27 C 0.143 3.857 28 H 0.251 0.749 29 H -0.018 1.018 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.420 0.580 38 H 0.187 0.813 39 H 0.158 0.842 40 H 0.207 0.793 41 H -0.002 1.002 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 -24.225 1.065 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.249 4.249 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.086 0.914 9 N -0.337 5.337 10 C 0.015 3.985 11 C -0.121 4.121 12 H 0.129 0.871 13 C -0.144 4.144 14 C -0.146 4.146 15 C -0.146 4.146 16 C 0.083 3.917 17 N -0.344 5.344 18 C 0.292 3.708 19 O -0.444 6.444 20 C -0.221 4.221 21 C 0.213 3.787 22 F -0.183 7.183 23 F -0.164 7.164 24 C 0.188 3.812 25 F -0.166 7.166 26 F -0.183 7.183 27 C 0.015 3.985 28 H 0.061 0.939 29 H 0.000 1.000 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.259 0.741 38 H 0.205 0.795 39 H 0.176 0.824 40 H 0.223 0.777 41 H 0.016 0.984 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.826 -23.731 1.354 24.255 hybrid contribution 0.985 1.397 -0.642 1.826 sum -3.841 -22.335 0.712 22.674 Atomic orbital electron populations 1.69814 1.05784 1.25113 1.58127 1.25505 0.96691 1.00420 1.02289 0.85093 0.77581 0.79239 0.77480 1.21362 1.21124 1.20139 1.19341 0.90599 0.83780 1.43355 0.91358 1.44649 1.03055 1.00059 1.85938 1.21921 0.84240 0.96865 0.95508 1.22929 0.95198 0.96122 0.97819 0.87136 1.22366 1.00859 0.98087 0.93050 1.22562 0.94574 0.99266 0.98169 1.22495 0.98151 1.00772 0.93180 1.21734 0.95728 0.81799 0.92457 1.45668 1.13255 1.15242 1.60231 1.20701 0.84015 0.86924 0.79188 1.90821 1.27813 1.76946 1.48824 1.22943 0.96313 0.94150 1.08672 1.22311 0.88112 0.91999 0.76316 1.93082 1.67386 1.79010 1.78843 1.93088 1.91821 1.95877 1.35639 1.23316 0.85407 0.90743 0.81710 1.93062 1.89933 1.96049 1.37592 1.93043 1.47630 1.81129 1.96473 1.21885 0.95238 0.85795 0.95559 0.93938 1.00037 0.87981 0.89411 0.94371 0.91240 0.88780 0.94137 0.91430 0.74106 0.79528 0.82380 0.77655 0.98395 0.95980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.81 10.08 21.65 0.22 -54.59 16 2 C -0.06 -3.21 5.49 84.86 0.47 -2.74 16 3 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.24 -14.20 10.34 84.03 0.87 -13.34 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.61 -32.85 3.39 -691.43 -2.35 -35.19 16 10 C 0.14 6.69 5.56 86.50 0.48 7.17 16 11 C -0.10 -3.40 3.62 -9.44 -0.03 -3.44 16 12 H 0.11 2.84 7.71 -2.39 -0.02 2.82 16 13 C -0.11 -3.34 6.22 31.75 0.20 -3.14 16 14 C -0.11 -2.88 6.92 32.00 0.22 -2.66 16 15 C -0.11 -3.64 5.57 31.75 0.18 -3.47 16 16 C 0.17 5.85 0.94 5.64 0.01 5.86 16 17 N -0.69 -16.60 5.24 -413.78 -2.17 -18.77 16 18 C 0.51 12.86 6.94 87.66 0.61 13.47 16 19 O -0.57 -20.96 12.91 -3.02 -0.04 -21.00 16 20 C -0.18 -2.28 5.18 29.85 0.15 -2.12 16 21 C 0.25 4.75 1.40 30.60 0.04 4.79 16 22 F -0.20 -5.98 16.10 44.97 0.72 -5.25 16 23 F -0.18 -4.34 16.12 44.97 0.73 -3.61 16 24 C 0.24 2.71 4.83 71.98 0.35 3.06 16 25 F -0.19 -2.47 16.80 44.97 0.76 -1.71 16 26 F -0.20 -3.68 17.30 44.97 0.78 -2.90 16 27 C 0.14 6.66 5.47 87.19 0.48 7.14 16 28 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 29 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 30 H 0.10 5.50 4.90 -2.39 -0.01 5.49 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.04 1.53 7.58 -2.39 -0.02 1.52 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.04 1.67 7.57 -2.39 -0.02 1.65 16 36 H 0.07 2.25 6.69 -2.39 -0.02 2.23 16 37 H 0.42 6.25 8.29 -92.71 -0.77 5.48 16 38 H 0.19 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.16 1.26 7.80 -2.39 -0.02 1.24 16 40 H 0.21 -0.26 8.14 -2.38 -0.02 -0.28 16 41 H 0.00 -0.08 8.08 -2.39 -0.02 -0.10 16 42 H 0.02 1.12 7.63 -2.39 -0.02 1.11 16 Total: -1.00 -82.82 348.53 4.99 -77.83 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 0.30 Total: 6.10 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 4.01 Total: 10.58 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -4.30 Total: -108.55 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.04 Total: -21.00 kcal Atomic # 9 Polarization: -16.46 SS G_CDS: 2.98 Total: -13.48 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -82.82 4.99 -77.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111871982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.102 kcal (2) G-P(sol) polarization free energy of solvation -82.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds