Wall clock time and date at job start Tue Mar 31 2020 20:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00357 * 2 1 4 4 H 1.48501 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46929 * 299.99608 * 3 2 1 6 6 H 1.48496 * 109.47248 * 59.99723 * 3 2 1 7 7 C 1.38818 * 119.99180 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99466 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00507 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99998 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.38911 * 35.77767 * 10 9 7 12 12 C 1.54392 * 110.34345 * 273.54558 * 10 9 7 13 13 N 1.48148 * 104.61821 * 265.00040 * 12 10 9 14 14 C 1.34769 * 127.83991 * 140.41458 * 13 12 10 15 15 O 1.21287 * 119.99899 * 179.97438 * 14 13 12 16 16 C 1.50699 * 119.99942 * 359.97438 * 14 13 12 17 17 C 1.53004 * 109.47045 * 179.97438 * 16 14 13 18 18 N 1.46504 * 109.46921 * 180.02562 * 17 16 14 19 19 C 1.34782 * 119.99615 * 180.02562 * 18 17 16 20 20 N 1.34774 * 119.99680 * 179.97438 * 19 18 17 21 21 O 1.21584 * 120.00113 * 359.97438 * 19 18 17 22 22 C 1.48151 * 104.32185 * 320.41169 * 13 12 10 23 23 C 1.54393 * 104.71948 * 39.53000 * 22 13 12 24 24 H 1.09003 * 110.34180 * 95.06488 * 23 22 13 25 25 C 1.53003 * 110.34025 * 217.32129 * 23 22 13 26 26 F 1.39900 * 109.47411 * 58.54587 * 25 23 22 27 27 F 1.39898 * 109.46882 * 178.54979 * 25 23 22 28 28 F 1.39900 * 109.46935 * 298.54625 * 25 23 22 29 29 H 0.97005 * 119.99390 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99686 * 359.97438 * 9 7 2 31 31 H 1.08996 * 110.40658 * 146.21016 * 12 10 9 32 32 H 1.09001 * 110.50446 * 23.83367 * 12 10 9 33 33 H 1.08993 * 109.47106 * 299.99918 * 16 14 13 34 34 H 1.09003 * 109.47005 * 60.00149 * 16 14 13 35 35 H 1.09002 * 109.46999 * 300.00014 * 17 16 14 36 36 H 1.08998 * 109.47002 * 59.99793 * 17 16 14 37 37 H 0.96995 * 120.00268 * 359.97438 * 18 17 16 38 38 H 0.97004 * 120.00200 * 359.97438 * 20 19 18 39 39 H 0.97000 * 120.00271 * 180.02562 * 20 19 18 40 40 H 1.09002 * 110.40666 * 158.37332 * 22 13 12 41 41 H 1.09002 * 110.40751 * 280.68774 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 2.9655 -3.5714 0.5979 12 6 2.4037 -4.0770 -1.4443 13 7 1.3093 -4.9941 -1.8392 14 6 0.6913 -5.0777 -3.0339 15 8 -0.1949 -5.8884 -3.2028 16 6 1.1012 -4.1639 -4.1599 17 6 0.2500 -4.4634 -5.3955 18 7 0.6490 -3.5755 -6.4903 19 6 0.0309 -3.6592 -7.6851 20 7 0.3977 -2.8420 -8.6922 21 8 -0.8573 -4.4719 -7.8545 22 6 1.0484 -5.7985 -0.6227 23 6 1.1651 -4.7943 0.5442 24 1 0.1814 -4.4085 0.8119 25 6 1.8243 -5.4593 1.7542 26 9 3.0912 -5.9314 1.3944 27 9 1.9509 -4.5254 2.7881 28 9 1.0335 -6.5293 2.1866 29 1 -0.4849 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 3.3621 -4.5954 -1.4702 32 1 2.4254 -3.2066 -2.1001 33 1 0.9528 -3.1270 -3.8587 34 1 2.1529 -4.3269 -4.3955 35 1 0.3988 -5.5004 -5.6965 36 1 -0.8018 -4.3008 -5.1602 37 1 1.3574 -2.9269 -6.3551 38 1 1.1061 -2.1933 -8.5569 39 1 -0.0473 -2.9019 -9.5520 40 1 0.0464 -6.2261 -0.6575 41 1 1.7940 -6.5872 -0.5215 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112204020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:46 Heat of formation + Delta-G solvation = -204.054230 kcal Electronic energy + Delta-G solvation = -30241.692985 eV Core-core repulsion = 25355.963571 eV Total energy + Delta-G solvation = -4885.729414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.95451 -47.46573 -47.37037 -40.12630 -39.66897 -37.75962 -35.14928 -34.15401 -33.76553 -32.25791 -30.92543 -30.20196 -27.70658 -26.05289 -24.42433 -23.55276 -22.21641 -21.25309 -20.43335 -19.42819 -18.38608 -18.36509 -18.06195 -17.74012 -17.45704 -16.82197 -16.73989 -16.03687 -15.47109 -15.23200 -14.91598 -14.62992 -14.35735 -14.30784 -14.16376 -14.12173 -13.85554 -13.65738 -13.62530 -13.53744 -13.40320 -13.23485 -12.92873 -12.25273 -12.00071 -11.88164 -11.73791 -11.51056 -11.34290 -11.01514 -10.96157 -10.92354 -10.44020 -10.23507 -9.95433 -9.85370 -9.79478 -9.28872 -9.10602 -8.63604 -7.26055 -5.99756 -3.32754 2.56954 2.72680 2.87189 3.12925 3.20173 3.28786 3.35334 3.38014 3.92898 4.02025 4.15869 4.32713 4.41120 4.66790 4.72561 4.83015 4.98846 5.03092 5.20199 5.26499 5.39516 5.43519 5.47696 5.67372 5.85090 5.87881 5.92719 5.96311 6.04187 6.14501 6.33414 6.44154 6.56442 6.75614 7.48802 7.63066 7.82483 8.15179 8.22963 8.51446 9.28322 9.77334 10.12623 11.21556 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.008062 B = 0.003991 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3472.155960 B = 7014.087451 C = 9882.405645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.075 0.925 9 N -0.710 5.710 10 C 0.179 3.821 11 H 0.076 0.924 12 C 0.072 3.928 13 N -0.612 5.612 14 C 0.546 3.454 15 O -0.545 6.545 16 C -0.149 4.149 17 C 0.154 3.846 18 N -0.745 5.745 19 C 0.705 3.295 20 N -0.870 5.870 21 O -0.594 6.594 22 C 0.118 3.882 23 C -0.166 4.166 24 H 0.129 0.871 25 C 0.464 3.536 26 F -0.184 7.184 27 F -0.173 7.173 28 F -0.187 7.187 29 H 0.258 0.742 30 H 0.388 0.612 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.397 0.603 38 H 0.397 0.603 39 H 0.413 0.587 40 H 0.094 0.906 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.101 -7.527 -7.099 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.385 4.385 8 H 0.093 0.907 9 N -0.351 5.351 10 C 0.066 3.934 11 H 0.094 0.906 12 C -0.054 4.054 13 N -0.345 5.345 14 C 0.335 3.665 15 O -0.423 6.423 16 C -0.189 4.189 17 C 0.030 3.970 18 N -0.401 5.401 19 C 0.403 3.597 20 N -0.438 5.438 21 O -0.471 6.471 22 C -0.006 4.006 23 C -0.188 4.188 24 H 0.147 0.853 25 C 0.410 3.590 26 F -0.165 7.165 27 F -0.155 7.155 28 F -0.168 7.168 29 H 0.068 0.932 30 H 0.222 0.778 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.231 0.769 38 H 0.224 0.776 39 H 0.245 0.755 40 H 0.112 0.888 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.946 -8.566 -7.223 12.685 hybrid contribution 0.822 1.614 0.170 1.820 sum 6.768 -6.951 -7.053 11.995 Atomic orbital electron populations 1.69674 1.05218 1.26077 1.56117 1.24781 0.95472 0.97877 1.01871 0.86119 0.78850 0.83798 0.77341 1.20345 1.21757 1.21658 1.19231 0.91148 0.83529 1.44631 0.90664 1.42434 1.05793 0.98991 1.87871 1.21063 0.94095 0.85368 0.92883 0.90586 1.23626 0.88556 0.93300 0.99928 1.48774 1.37427 1.37973 1.10360 1.19840 0.81063 0.83650 0.81937 1.90732 1.30915 1.38659 1.81973 1.21751 1.01845 1.01798 0.93519 1.20888 0.99125 0.93712 0.83319 1.45070 1.41564 1.42031 1.11469 1.15926 0.81752 0.81443 0.80573 1.42983 1.43931 1.41750 1.15115 1.90988 1.33469 1.40136 1.82542 1.22096 1.03483 0.92535 0.82468 1.23895 1.03762 0.98908 0.92186 0.85323 1.20288 0.76738 0.76664 0.85355 1.93154 1.42494 1.89163 1.91705 1.93235 1.95847 1.65145 1.61225 1.93173 1.74184 1.58240 1.91229 0.93191 0.77757 0.91433 0.88586 0.87217 0.88351 0.90749 0.90494 0.76892 0.77575 0.75471 0.88789 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.56 13.06 55.49 0.72 -24.84 16 2 C 0.00 -0.07 5.50 -17.43 -0.10 -0.16 16 3 Si 0.91 20.35 29.55 -169.99 -5.02 15.33 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.26 -6.14 9.97 -15.06 -0.15 -6.29 16 8 H 0.08 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.71 -15.15 5.14 -51.97 -0.27 -15.42 16 10 C 0.18 2.92 3.01 -66.43 -0.20 2.72 16 11 H 0.08 1.27 7.37 -51.93 -0.38 0.88 16 12 C 0.07 0.99 6.63 -2.41 -0.02 0.98 16 13 N -0.61 -8.72 3.32 -169.30 -0.56 -9.28 16 14 C 0.55 8.23 7.91 -10.99 -0.09 8.14 16 15 O -0.55 -9.96 16.25 5.55 0.09 -9.87 16 16 C -0.15 -1.73 4.79 -27.88 -0.13 -1.86 16 17 C 0.15 1.98 4.96 -4.04 -0.02 1.96 16 18 N -0.74 -7.85 5.56 -65.22 -0.36 -8.22 16 19 C 0.71 8.78 8.84 -86.92 -0.77 8.02 16 20 N -0.87 -6.56 8.88 27.63 0.25 -6.32 16 21 O -0.59 -10.42 17.18 5.29 0.09 -10.33 16 22 C 0.12 1.58 6.33 -2.40 -0.02 1.57 16 23 C -0.17 -2.40 2.85 -89.12 -0.25 -2.65 16 24 H 0.13 1.97 7.65 -51.93 -0.40 1.57 16 25 C 0.46 6.49 2.51 37.16 0.09 6.58 16 26 F -0.18 -2.45 16.05 2.25 0.04 -2.41 16 27 F -0.17 -2.77 17.07 2.25 0.04 -2.73 16 28 F -0.19 -2.53 17.11 2.25 0.04 -2.49 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 9.11 7.51 -40.82 -0.31 8.81 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.39 7.22 -51.93 -0.37 1.02 16 33 H 0.11 1.31 7.95 -51.93 -0.41 0.89 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 37 H 0.40 2.90 8.49 -40.82 -0.35 2.56 16 38 H 0.40 1.73 8.84 -40.82 -0.36 1.36 16 39 H 0.41 2.70 8.93 -40.82 -0.36 2.34 16 40 H 0.09 1.30 7.88 -51.93 -0.41 0.89 16 41 H 0.08 0.94 7.32 -51.93 -0.38 0.56 16 LS Contribution 361.56 15.07 5.45 5.45 Total: -1.00 -32.98 361.56 -6.12 -39.10 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -4.97 Total: 13.02 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: -1.65 Total: 19.01 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: -0.22 Total: -64.07 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.18 Total: -20.20 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 0.11 Total: -7.64 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.98 -6.12 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112204020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.958 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds