Wall clock time and date at job start Tue Mar 31 2020 20:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00357 * 2 1 4 4 H 1.48501 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46929 * 299.99608 * 3 2 1 6 6 H 1.48496 * 109.47248 * 59.99723 * 3 2 1 7 7 C 1.38818 * 119.99180 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99466 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00507 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99998 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.38911 * 35.77767 * 10 9 7 12 12 C 1.54392 * 110.34345 * 273.54558 * 10 9 7 13 13 N 1.48148 * 104.61821 * 265.00040 * 12 10 9 14 14 C 1.34769 * 127.83991 * 140.41458 * 13 12 10 15 15 O 1.21287 * 119.99899 * 179.97438 * 14 13 12 16 16 C 1.50699 * 119.99942 * 359.97438 * 14 13 12 17 17 C 1.53004 * 109.47045 * 179.97438 * 16 14 13 18 18 N 1.46504 * 109.46921 * 180.02562 * 17 16 14 19 19 C 1.34782 * 119.99615 * 180.02562 * 18 17 16 20 20 N 1.34774 * 119.99680 * 179.97438 * 19 18 17 21 21 O 1.21584 * 120.00113 * 359.97438 * 19 18 17 22 22 C 1.48151 * 104.32185 * 320.41169 * 13 12 10 23 23 C 1.54393 * 104.71948 * 39.53000 * 22 13 12 24 24 H 1.09003 * 110.34180 * 95.06488 * 23 22 13 25 25 C 1.53003 * 110.34025 * 217.32129 * 23 22 13 26 26 F 1.39900 * 109.47411 * 58.54587 * 25 23 22 27 27 F 1.39898 * 109.46882 * 178.54979 * 25 23 22 28 28 F 1.39900 * 109.46935 * 298.54625 * 25 23 22 29 29 H 0.97005 * 119.99390 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99686 * 359.97438 * 9 7 2 31 31 H 1.08996 * 110.40658 * 146.21016 * 12 10 9 32 32 H 1.09001 * 110.50446 * 23.83367 * 12 10 9 33 33 H 1.08993 * 109.47106 * 299.99918 * 16 14 13 34 34 H 1.09003 * 109.47005 * 60.00149 * 16 14 13 35 35 H 1.09002 * 109.46999 * 300.00014 * 17 16 14 36 36 H 1.08998 * 109.47002 * 59.99793 * 17 16 14 37 37 H 0.96995 * 120.00268 * 359.97438 * 18 17 16 38 38 H 0.97004 * 120.00200 * 359.97438 * 20 19 18 39 39 H 0.97000 * 120.00271 * 180.02562 * 20 19 18 40 40 H 1.09002 * 110.40666 * 158.37332 * 22 13 12 41 41 H 1.09002 * 110.40751 * 280.68774 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 2.9655 -3.5714 0.5979 12 6 2.4037 -4.0770 -1.4443 13 7 1.3093 -4.9941 -1.8392 14 6 0.6913 -5.0777 -3.0339 15 8 -0.1949 -5.8884 -3.2028 16 6 1.1012 -4.1639 -4.1599 17 6 0.2500 -4.4634 -5.3955 18 7 0.6490 -3.5755 -6.4903 19 6 0.0309 -3.6592 -7.6851 20 7 0.3977 -2.8420 -8.6922 21 8 -0.8573 -4.4719 -7.8545 22 6 1.0484 -5.7985 -0.6227 23 6 1.1651 -4.7943 0.5442 24 1 0.1814 -4.4085 0.8119 25 6 1.8243 -5.4593 1.7542 26 9 3.0912 -5.9314 1.3944 27 9 1.9509 -4.5254 2.7881 28 9 1.0335 -6.5293 2.1866 29 1 -0.4849 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 3.3621 -4.5954 -1.4702 32 1 2.4254 -3.2066 -2.1001 33 1 0.9528 -3.1270 -3.8587 34 1 2.1529 -4.3269 -4.3955 35 1 0.3988 -5.5004 -5.6965 36 1 -0.8018 -4.3008 -5.1602 37 1 1.3574 -2.9269 -6.3551 38 1 1.1061 -2.1933 -8.5569 39 1 -0.0473 -2.9019 -9.5520 40 1 0.0464 -6.2261 -0.6575 41 1 1.7940 -6.5872 -0.5215 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112204020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:46 Heat of formation + Delta-G solvation = -230.968139 kcal Electronic energy + Delta-G solvation = -30242.860060 eV Core-core repulsion = 25355.963571 eV Total energy + Delta-G solvation = -4886.896488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.135 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.11092 -48.58747 -48.56496 -41.25803 -40.72652 -39.03304 -36.21734 -35.78300 -34.65438 -33.61370 -32.41337 -31.28468 -29.10083 -27.17584 -26.02951 -24.71499 -23.49537 -22.22535 -21.70663 -20.56477 -19.59027 -19.46627 -19.27170 -18.99349 -18.42980 -18.20938 -17.82242 -17.10571 -16.83956 -16.39720 -16.24118 -15.75204 -15.52018 -15.47122 -15.33663 -15.19383 -15.13512 -15.02383 -14.96403 -14.75206 -14.70808 -14.40780 -14.15705 -13.51600 -13.32228 -13.03801 -13.00068 -12.81983 -12.62286 -12.51777 -12.44832 -12.19857 -11.99140 -11.72343 -11.58225 -11.13363 -10.95067 -10.75555 -10.03856 -9.89038 -9.01724 -7.92198 -5.22868 1.46217 1.52336 1.55502 1.61627 1.63381 1.78789 2.13945 2.17288 2.56591 2.78434 2.84352 2.99687 3.40636 3.45993 3.64807 3.70979 3.74802 3.90753 3.91738 4.02961 4.07568 4.24913 4.46449 4.54687 4.57887 4.74612 4.81333 4.85763 4.91547 4.98329 5.22782 5.39454 5.58931 5.88435 6.03368 6.26145 6.47262 7.05746 7.09728 7.35375 7.64200 8.02272 8.26617 9.30580 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.008062 B = 0.003991 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3472.155960 B = 7014.087451 C = 9882.405645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.065 4.065 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.296 1.296 6 H -0.304 1.304 7 C -0.236 4.236 8 H 0.089 0.911 9 N -0.723 5.723 10 C 0.172 3.828 11 H 0.080 0.920 12 C 0.082 3.918 13 N -0.612 5.612 14 C 0.539 3.461 15 O -0.584 6.584 16 C -0.134 4.134 17 C 0.162 3.838 18 N -0.730 5.730 19 C 0.698 3.302 20 N -0.845 5.845 21 O -0.650 6.650 22 C 0.119 3.881 23 C -0.158 4.158 24 H 0.116 0.884 25 C 0.472 3.528 26 F -0.175 7.175 27 F -0.186 7.186 28 F -0.183 7.183 29 H 0.249 0.751 30 H 0.374 0.626 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.136 0.864 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.416 0.584 38 H 0.416 0.584 39 H 0.421 0.579 40 H 0.087 0.913 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.935 -7.608 -7.732 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.258 4.258 3 Si 0.796 3.204 4 H -0.183 1.183 5 H -0.224 1.224 6 H -0.232 1.232 7 C -0.367 4.367 8 H 0.106 0.894 9 N -0.362 5.362 10 C 0.061 3.939 11 H 0.098 0.902 12 C -0.043 4.043 13 N -0.344 5.344 14 C 0.329 3.671 15 O -0.464 6.464 16 C -0.173 4.173 17 C 0.037 3.963 18 N -0.388 5.388 19 C 0.395 3.605 20 N -0.414 5.414 21 O -0.533 6.533 22 C -0.004 4.004 23 C -0.180 4.180 24 H 0.134 0.866 25 C 0.417 3.583 26 F -0.156 7.156 27 F -0.167 7.167 28 F -0.164 7.164 29 H 0.058 0.942 30 H 0.206 0.794 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.154 0.846 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.254 0.746 38 H 0.247 0.753 39 H 0.254 0.746 40 H 0.106 0.894 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.903 -8.629 -7.866 14.684 hybrid contribution -0.008 1.547 0.404 1.599 sum 8.895 -7.082 -7.461 13.600 Atomic orbital electron populations 1.69824 1.06745 1.25903 1.59238 1.25454 0.96020 1.00821 1.03517 0.85197 0.78753 0.80355 0.76144 1.18340 1.22391 1.23247 1.19632 0.91765 0.84272 1.41023 0.89364 1.42568 1.05296 1.00186 1.88156 1.21285 0.93913 0.83951 0.94735 0.90173 1.23503 0.89648 0.93677 0.97431 1.48833 1.37379 1.37888 1.10342 1.20425 0.80392 0.83535 0.82716 1.90720 1.32555 1.40458 1.82687 1.21673 1.03475 1.00744 0.91450 1.20605 0.97728 0.93476 0.84517 1.44813 1.41697 1.41910 1.10405 1.16210 0.81303 0.81441 0.81530 1.42742 1.43795 1.40698 1.14184 1.90953 1.36058 1.42695 1.83572 1.22167 1.04023 0.92570 0.81685 1.23736 1.02810 0.98622 0.92814 0.86633 1.20097 0.76971 0.76501 0.84688 1.93171 1.41896 1.88999 1.91561 1.93214 1.95930 1.65767 1.61821 1.93186 1.74147 1.57912 1.91148 0.94224 0.79394 0.87823 0.88732 0.87009 0.84617 0.92168 0.93778 0.74631 0.75316 0.74616 0.89422 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -54.39 13.06 21.65 0.28 -54.11 16 2 C -0.07 -3.33 5.50 84.86 0.47 -2.86 16 3 Si 0.97 41.51 29.55 68.60 2.03 43.54 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.30 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.24 -11.01 9.97 84.04 0.84 -10.17 16 8 H 0.09 3.84 7.83 -2.91 -0.02 3.81 16 9 N -0.72 -30.15 5.14 -318.34 -1.64 -31.79 16 10 C 0.17 5.25 3.01 45.96 0.14 5.39 16 11 H 0.08 2.43 7.37 -2.39 -0.02 2.41 16 12 C 0.08 2.00 6.63 86.54 0.57 2.58 16 13 N -0.61 -16.13 3.32 -807.93 -2.68 -18.81 16 14 C 0.54 15.61 7.91 87.66 0.69 16.30 16 15 O -0.58 -21.43 16.25 -3.05 -0.05 -21.48 16 16 C -0.13 -2.85 4.79 29.85 0.14 -2.70 16 17 C 0.16 4.13 4.96 86.38 0.43 4.56 16 18 N -0.73 -14.39 5.56 -478.51 -2.66 -17.05 16 19 C 0.70 16.81 8.84 179.05 1.58 18.40 16 20 N -0.84 -11.13 8.88 -184.75 -1.64 -12.77 16 21 O -0.65 -23.26 17.18 -3.98 -0.07 -23.33 16 22 C 0.12 2.97 6.33 86.54 0.55 3.52 16 23 C -0.16 -4.34 2.85 -9.82 -0.03 -4.37 16 24 H 0.12 3.53 7.65 -2.39 -0.02 3.52 16 25 C 0.47 12.31 2.51 71.98 0.18 12.49 16 26 F -0.17 -4.14 16.05 44.97 0.72 -3.42 16 27 F -0.19 -5.71 17.07 44.97 0.77 -4.95 16 28 F -0.18 -4.64 17.11 44.97 0.77 -3.87 16 29 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 30 H 0.37 17.69 7.51 -92.71 -0.70 16.99 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.87 16 32 H 0.09 2.41 7.22 -2.39 -0.02 2.39 16 33 H 0.11 2.42 7.95 -2.39 -0.02 2.41 16 34 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 36 H 0.04 1.41 8.10 -2.39 -0.02 1.39 16 37 H 0.42 4.93 8.49 -92.71 -0.79 4.14 16 38 H 0.42 2.42 8.84 -92.71 -0.82 1.60 16 39 H 0.42 4.78 8.93 -92.71 -0.83 3.95 16 40 H 0.09 2.35 7.88 -2.39 -0.02 2.33 16 41 H 0.10 2.11 7.32 -2.39 -0.02 2.09 16 Total: -1.00 -73.41 361.56 -0.59 -74.00 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -1.99 Total: 30.91 kcal Atomic # 6 Polarization: 37.56 SS G_CDS: 5.56 Total: 43.13 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -8.33 Total: -134.54 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -0.12 Total: -44.80 kcal Atomic # 9 Polarization: -14.49 SS G_CDS: 2.26 Total: -12.23 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -73.41 -0.59 -74.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112204020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.972 kcal (2) G-P(sol) polarization free energy of solvation -73.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds