Wall clock time and date at job start Tue Mar 31 2020 20:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99560 * 2 1 4 4 H 1.48503 * 109.47153 * 269.99524 * 3 2 1 5 5 H 1.48495 * 109.47643 * 29.99911 * 3 2 1 6 6 H 1.48506 * 109.46781 * 149.99666 * 3 2 1 7 7 C 1.38946 * 120.00438 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00239 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99524 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99440 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00430 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99864 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47180 * 179.97438 * 12 10 9 14 14 C 1.48550 * 111.00124 * 285.41690 * 13 12 10 15 15 C 1.54377 * 104.59714 * 200.96017 * 14 13 12 16 16 H 1.08998 * 117.04797 * 245.27966 * 15 14 13 17 17 C 1.54263 * 105.05865 * 23.85249 * 15 14 13 18 18 H 1.09002 * 121.78722 * 223.01008 * 17 15 14 19 19 C 1.48561 * 110.99624 * 169.99620 * 13 12 10 20 20 C 1.53000 * 61.46212 * 114.16621 * 17 15 14 21 21 H 1.08993 * 117.44766 * 253.01669 * 20 17 15 22 22 N 1.46501 * 117.44177 * 108.30586 * 20 17 15 23 23 C 1.34777 * 119.99816 * 155.00206 * 22 20 17 24 24 O 1.21282 * 120.00324 * 0.02562 * 23 22 20 25 25 C 1.50702 * 120.00030 * 180.02562 * 23 22 20 26 26 H 1.09005 * 110.50341 * 321.28740 * 25 23 22 27 27 C 1.54094 * 110.56547 * 84.18823 * 25 23 22 28 28 O 1.45703 * 104.00701 * 118.57300 * 27 25 23 29 29 C 1.33776 * 109.47597 * 0.02562 * 28 27 25 30 30 O 1.21510 * 123.06597 * 180.02562 * 29 28 27 31 31 N 1.34004 * 113.85746 * 0.02562 * 29 28 27 32 32 H 0.96999 * 120.00329 * 0.02562 * 1 2 3 33 33 H 0.96999 * 120.00443 * 359.97438 * 9 7 2 34 34 H 1.09001 * 109.47054 * 59.99348 * 12 10 9 35 35 H 1.08997 * 109.46447 * 299.99802 * 12 10 9 36 36 H 1.09007 * 110.41482 * 319.73921 * 14 13 12 37 37 H 1.09003 * 110.41686 * 82.06116 * 14 13 12 38 38 H 1.08997 * 110.41547 * 40.26670 * 19 13 12 39 39 H 1.08997 * 110.51339 * 277.86662 * 19 13 12 40 40 H 0.96998 * 120.00167 * 335.00392 * 22 20 17 41 41 H 1.08997 * 110.51916 * 237.20278 * 27 25 23 42 42 H 1.08998 * 110.51945 * 359.94567 * 27 25 23 43 43 H 0.96996 * 125.55737 * 179.97438 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5455 1.4403 0.7002 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5577 0.0021 12 6 1.2440 -4.8629 0.0010 13 7 2.1986 -5.9794 0.0017 14 6 2.8259 -6.1445 -1.3347 15 6 3.3437 -7.5988 -1.3445 16 1 4.4232 -7.7402 -1.3959 17 6 2.4756 -8.3403 -0.3071 18 1 2.9070 -9.0444 0.4044 19 6 1.5062 -7.2717 0.2421 20 6 2.3530 -8.7365 -1.7799 21 1 1.4488 -8.4338 -2.3080 22 7 2.9143 -10.0291 -2.1803 23 6 2.4338 -10.6648 -3.2673 24 8 1.5371 -10.1666 -3.9142 25 6 3.0108 -11.9947 -3.6789 26 1 4.0909 -12.0042 -3.5320 27 6 2.3444 -13.1405 -2.8930 28 8 1.7120 -13.9537 -3.9233 29 6 1.9445 -13.4120 -5.1242 30 8 1.5279 -13.8920 -6.1599 31 7 2.6787 -12.2919 -5.0806 32 1 -0.4850 0.8400 -0.0004 33 1 0.3534 -2.3907 0.0005 34 1 0.6183 -4.9209 -0.8897 35 1 0.6164 -4.9204 0.8903 36 1 2.0865 -5.9989 -2.1223 37 1 3.6522 -5.4440 -1.4561 38 1 0.5604 -7.3026 -0.2986 39 1 1.3387 -7.4226 1.3085 40 1 3.6318 -10.4275 -1.6631 41 1 3.0937 -13.7208 -2.3545 42 1 1.5968 -12.7470 -2.2043 43 1 2.9467 -11.7629 -5.8482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114204561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:16 Heat of formation + Delta-G solvation = -83.115946 kcal Electronic energy + Delta-G solvation = -28158.308283 eV Core-core repulsion = 23819.679887 eV Total energy + Delta-G solvation = -4338.628396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36868 -40.47506 -39.43362 -37.95901 -37.60808 -35.45564 -35.20024 -33.93340 -32.90021 -31.22961 -30.41563 -28.43252 -27.68557 -25.61580 -24.59123 -22.95736 -22.67970 -21.37828 -21.07123 -20.37129 -19.16970 -18.79090 -18.53181 -17.87370 -17.71264 -17.06646 -16.57329 -15.95122 -15.69015 -15.37425 -15.03128 -14.91038 -14.83452 -14.60306 -14.51448 -14.14149 -13.82850 -13.69024 -13.50106 -13.17944 -12.96901 -12.56527 -12.21235 -11.99723 -11.56495 -11.51926 -11.49147 -11.40934 -11.22088 -11.12128 -10.93388 -10.87512 -10.40939 -10.30716 -10.22684 -9.89781 -9.51259 -9.18737 -8.56440 -8.07885 -7.97028 -6.42931 -3.83861 1.66900 1.87553 2.16556 2.37865 2.93007 3.16564 3.25182 3.25781 3.30990 3.41472 3.66626 3.87519 3.90799 3.93375 4.18132 4.32604 4.38706 4.42859 4.50535 4.60404 4.71048 4.89812 5.08623 5.17346 5.22646 5.35013 5.45716 5.55510 5.71274 5.77480 5.83934 5.88432 6.03215 6.16400 6.24027 6.28801 6.61328 6.76317 6.96452 7.10502 7.44081 7.53842 7.54452 8.04579 8.60291 9.16813 9.52974 10.04686 10.74824 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.001702 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.659582 B =16446.858931 C =16751.793265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.445 3.555 11 O -0.578 6.578 12 C 0.034 3.966 13 N -0.482 5.482 14 C 0.066 3.934 15 C -0.161 4.161 16 H 0.122 0.878 17 C -0.160 4.160 18 H 0.119 0.881 19 C 0.058 3.942 20 C 0.098 3.902 21 H 0.137 0.863 22 N -0.689 5.689 23 C 0.505 3.495 24 O -0.510 6.510 25 C 0.078 3.922 26 H 0.130 0.870 27 C 0.055 3.945 28 O -0.321 6.321 29 C 0.652 3.348 30 O -0.514 6.514 31 N -0.710 5.710 32 H 0.271 0.729 33 H 0.392 0.608 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.104 0.896 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.405 0.595 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.741 -25.373 -1.906 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.461 6.461 12 C -0.098 4.098 13 N -0.206 5.206 14 C -0.061 4.061 15 C -0.181 4.181 16 H 0.140 0.860 17 C -0.180 4.180 18 H 0.137 0.863 19 C -0.070 4.070 20 C -0.008 4.008 21 H 0.154 0.846 22 N -0.339 5.339 23 C 0.288 3.712 24 O -0.384 6.384 25 C -0.032 4.032 26 H 0.147 0.853 27 C -0.021 4.021 28 O -0.231 6.231 29 C 0.404 3.596 30 O -0.397 6.397 31 N -0.383 5.383 32 H 0.081 0.919 33 H 0.225 0.775 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.122 0.878 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.240 0.760 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 5.733 -25.290 -2.321 26.035 hybrid contribution -0.222 1.066 -0.426 1.169 sum 5.510 -24.224 -2.747 24.994 Atomic orbital electron populations 1.69608 1.05933 1.28162 1.50621 1.25260 0.95637 0.99722 0.97360 0.85859 0.79235 0.80832 0.78365 1.20441 1.20926 1.19421 1.19688 0.93342 0.82189 1.47599 0.87920 1.41862 1.09181 1.04578 1.64568 1.19663 0.88383 0.84424 0.84522 1.90506 1.13635 1.86968 1.55023 1.22069 0.94117 0.91736 1.01875 1.65286 1.26738 1.00890 1.27728 1.22691 1.00245 0.93505 0.89675 1.24655 0.97785 0.91932 1.03744 0.86046 1.23856 1.02142 1.00809 0.91207 0.86279 1.22693 0.94594 0.88242 1.01479 1.22508 0.98882 0.83036 0.96391 0.84583 1.45177 1.39317 1.20686 1.28749 1.20566 0.83426 0.86325 0.80893 1.90821 1.28735 1.66499 1.52312 1.22291 1.02713 0.93968 0.84259 0.85270 1.24265 0.98621 0.89363 0.89822 1.87325 1.70682 1.48992 1.16120 1.18409 0.77593 0.79851 0.83742 1.91115 1.55148 1.65917 1.27542 1.45680 1.56971 1.27909 1.07789 0.91872 0.77507 0.92986 0.89120 0.93895 0.87762 0.93562 0.89249 0.75982 0.85927 0.87039 0.71386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 10 C 0.44 10.27 7.63 -10.98 -0.08 10.19 16 11 O -0.58 -15.26 14.80 5.55 0.08 -15.18 16 12 C 0.03 0.58 5.32 -4.97 -0.03 0.55 16 13 N -0.48 -7.46 4.98 -231.41 -1.15 -8.61 16 14 C 0.07 0.96 5.75 -2.19 -0.01 0.95 16 15 C -0.16 -1.63 7.26 -87.06 -0.63 -2.26 16 16 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 17 C -0.16 -1.38 6.91 -89.23 -0.62 -2.00 16 18 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 19 C 0.06 0.65 6.25 -2.18 -0.01 0.63 16 20 C 0.10 0.82 6.15 -65.75 -0.40 0.42 16 21 H 0.14 1.46 7.40 -51.93 -0.38 1.08 16 22 N -0.69 -3.47 5.60 -51.70 -0.29 -3.76 16 23 C 0.50 3.37 6.93 -10.98 -0.08 3.29 16 24 O -0.51 -6.08 16.17 5.56 0.09 -5.99 16 25 C 0.08 0.27 4.17 -68.19 -0.28 -0.02 16 26 H 0.13 -0.07 8.14 -51.93 -0.42 -0.50 16 27 C 0.05 0.15 7.87 37.73 0.30 0.45 16 28 O -0.32 -2.64 11.09 -37.84 -0.42 -3.06 16 29 C 0.65 6.59 9.16 53.71 0.49 7.08 16 30 O -0.51 -7.41 18.04 -19.12 -0.34 -7.75 16 31 N -0.71 -4.68 5.66 -59.35 -0.34 -5.01 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 34 H 0.05 0.82 7.77 -51.93 -0.40 0.41 16 35 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 36 H 0.04 0.62 7.75 -51.93 -0.40 0.22 16 37 H 0.10 1.81 7.23 -51.93 -0.38 1.43 16 38 H 0.05 0.49 7.99 -51.93 -0.41 0.08 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.41 0.59 8.83 -40.82 -0.36 0.23 16 41 H 0.12 -0.12 8.14 -51.93 -0.42 -0.54 16 42 H 0.11 0.26 7.72 -51.93 -0.40 -0.15 16 43 H 0.44 2.51 8.96 -40.82 -0.37 2.14 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -38.27 369.93 -8.23 -46.49 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.47 Total: 7.87 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: -1.60 Total: 11.38 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -1.11 Total: -55.20 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.59 Total: -31.99 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.27 -8.23 -46.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114204561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.622 kcal (2) G-P(sol) polarization free energy of solvation -38.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds