Wall clock time and date at job start Tue Mar 31 2020 20:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35983 * 116.99537 * 179.97438 * 11 10 9 13 13 C 1.38781 * 120.49767 * 0.02562 * 12 11 10 14 14 C 1.38796 * 118.44365 * 179.97438 * 13 12 11 15 15 C 1.38065 * 119.35732 * 359.97438 * 14 13 12 16 16 N 1.31970 * 120.95507 * 0.02562 * 15 14 13 17 17 C 1.32267 * 121.68834 * 359.65401 * 16 15 14 18 18 N 1.39586 * 119.73048 * 180.31240 * 17 16 15 19 19 C 1.34775 * 119.99657 * 0.32047 * 18 17 16 20 20 O 1.21589 * 119.99882 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00018 * 179.97438 * 19 18 17 22 22 N 1.40100 * 119.99845 * 359.97438 * 21 19 18 23 23 C 1.34776 * 119.99845 * 179.97438 * 22 21 19 24 24 O 1.21275 * 120.00135 * 0.02562 * 23 22 21 25 25 C 1.50699 * 119.99664 * 179.97438 * 23 22 21 26 26 C 1.53000 * 109.46954 * 180.02562 * 25 23 22 27 27 O 1.42897 * 109.47459 * 180.02562 * 26 25 23 28 28 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 30 30 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 31 31 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 32 32 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 33 33 H 1.07993 * 120.77594 * 359.97438 * 13 12 11 34 34 H 1.08005 * 120.31678 * 180.02562 * 14 13 12 35 35 H 1.08000 * 119.51984 * 179.97438 * 15 14 13 36 36 H 0.97000 * 120.00171 * 180.31262 * 18 17 16 37 37 H 0.96995 * 119.99998 * 179.97438 * 21 19 18 38 38 H 0.97004 * 119.99921 * 359.97438 * 22 21 19 39 39 H 1.09002 * 109.47363 * 299.99891 * 25 23 22 40 40 H 1.09002 * 109.47117 * 60.00239 * 25 23 22 41 41 H 1.09000 * 109.46952 * 299.99472 * 26 25 23 42 42 H 1.08994 * 109.47497 * 59.99690 * 26 25 23 43 43 H 0.96698 * 114.00799 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0401 -0.0004 13 6 3.6581 -5.9794 -0.0009 14 6 4.3719 -7.1697 -0.0008 15 6 3.6880 -8.3691 0.0003 16 7 2.3687 -8.3981 0.0008 17 6 1.6492 -7.2883 0.0070 18 7 0.2556 -7.3667 0.0138 19 6 -0.3515 -8.5699 0.0206 20 8 0.3147 -9.5870 0.0203 21 7 -1.6971 -8.6458 0.0277 22 7 -2.4648 -7.4738 0.0286 23 6 -3.8104 -7.5496 0.0352 24 8 -4.3567 -8.6323 0.0408 25 6 -4.6360 -6.2889 0.0368 26 6 -6.1221 -6.6527 0.0453 27 8 -6.9052 -5.4573 0.0461 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.8721 -3.6043 -0.8905 32 1 2.8721 -3.6042 0.8895 33 1 4.1696 -5.0282 -0.0013 34 1 5.4519 -7.1577 -0.0007 35 1 4.2408 -9.2968 0.0000 36 1 -0.2759 -6.5553 0.0138 37 1 -2.1341 -9.5117 0.0322 38 1 -2.0278 -6.6078 0.0245 39 1 -4.4010 -5.7017 0.9246 40 1 -4.4095 -5.7052 -0.8554 41 1 -6.3575 -7.2400 -0.8423 42 1 -6.3483 -7.2362 0.9376 43 1 -7.8596 -5.6122 0.0510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116737661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:47 Heat of formation + Delta-G solvation = -67.935379 kcal Electronic energy + Delta-G solvation = -28463.497951 eV Core-core repulsion = 24125.527834 eV Total energy + Delta-G solvation = -4337.970117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.24483 -40.37928 -39.35999 -37.89510 -37.13508 -35.92680 -34.97335 -33.53083 -32.41160 -31.69473 -30.75052 -30.26427 -29.02869 -25.50148 -24.31052 -23.94402 -23.00329 -21.63513 -21.17672 -20.69135 -19.46431 -18.53627 -18.19551 -17.63636 -16.97705 -16.50986 -16.40094 -16.20029 -15.99728 -15.76653 -15.44811 -14.99771 -14.73750 -14.60689 -14.60602 -14.10214 -14.08752 -13.97530 -13.70763 -12.92824 -12.44558 -12.42232 -12.10340 -12.02317 -11.68516 -11.65673 -11.14417 -11.01810 -10.89462 -10.88428 -10.73879 -10.42439 -10.31077 -10.11615 -9.84467 -9.49448 -9.33563 -9.23117 -8.67977 -8.56396 -7.77169 -6.22582 -4.27728 1.14940 1.36845 1.48520 2.08537 2.50504 2.95493 3.20952 3.25527 3.26782 3.43356 3.65950 3.93860 4.25539 4.29915 4.36556 4.62227 4.67095 4.86784 4.88114 5.00618 5.14269 5.14573 5.16640 5.39190 5.45223 5.47081 5.76553 5.83069 5.93553 6.00820 6.08824 6.20027 6.29340 6.46357 6.58356 6.95526 7.19125 7.26685 7.29287 7.45406 7.56646 7.76003 7.82351 8.08868 8.12643 8.31565 8.76957 9.37658 10.88722 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.006321 B = 0.003510 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4428.803015 B = 7975.191224 C =12372.931023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.066 3.934 11 O -0.318 6.318 12 C 0.068 3.932 13 C -0.145 4.145 14 C -0.158 4.158 15 C 0.078 3.922 16 N -0.442 5.442 17 C 0.341 3.659 18 N -0.659 5.659 19 C 0.707 3.293 20 O -0.515 6.515 21 N -0.531 5.531 22 N -0.530 5.530 23 C 0.525 3.475 24 O -0.538 6.538 25 C -0.136 4.136 26 C 0.093 3.907 27 O -0.574 6.574 28 H 0.265 0.735 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.147 0.853 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.415 0.585 37 H 0.444 0.556 38 H 0.425 0.575 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.352 -13.282 0.063 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.231 6.231 12 C 0.017 3.983 13 C -0.172 4.172 14 C -0.179 4.179 15 C -0.079 4.079 16 N -0.156 5.156 17 C 0.108 3.892 18 N -0.311 5.311 19 C 0.406 3.594 20 O -0.381 6.381 21 N -0.290 5.290 22 N -0.282 5.282 23 C 0.311 3.689 24 O -0.413 6.413 25 C -0.178 4.178 26 C 0.015 3.985 27 O -0.380 6.380 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.253 0.747 37 H 0.291 0.709 38 H 0.267 0.733 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.406 -15.100 0.060 15.730 hybrid contribution 0.418 2.167 0.000 2.207 sum -3.988 -12.933 0.060 13.534 Atomic orbital electron populations 1.69939 1.06082 1.27272 1.49316 1.24961 0.94915 0.99382 0.94697 0.86547 0.79540 0.82539 0.78772 1.20061 1.21053 1.20068 1.20898 0.93044 0.90121 1.52811 0.92396 1.19121 0.94114 0.88895 0.98831 1.23425 0.97314 0.80142 0.99956 1.86074 1.36382 1.12975 1.87685 1.19506 0.91169 0.86858 1.00802 1.21612 0.92088 1.00457 1.03017 1.21923 1.01323 0.92480 1.02194 1.22426 0.88601 0.98014 0.98851 1.67575 1.07953 1.26758 1.13318 1.17402 0.83412 0.87117 1.01270 1.42420 1.04535 1.08377 1.75785 1.15724 0.80201 0.84483 0.79015 1.91146 1.59368 1.33132 1.54494 1.44679 1.00992 1.01787 1.81496 1.45043 1.04214 1.01833 1.77119 1.20682 0.80254 0.92007 0.75914 1.90748 1.70897 1.29869 1.49796 1.21426 0.94236 0.95028 1.07066 1.21730 0.89129 0.86268 1.01411 1.86423 1.21953 1.31766 1.97821 0.92536 0.95352 0.95365 0.92844 0.92852 0.83567 0.84622 0.82436 0.74699 0.70944 0.73276 0.86946 0.86945 0.92609 0.92595 0.76690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.68 13.29 55.43 0.74 -23.94 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.53 -13.66 9.11 -34.44 -0.31 -13.97 16 8 H 0.06 1.42 7.74 -52.48 -0.41 1.02 16 9 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 10 C 0.07 1.21 4.70 37.16 0.17 1.38 16 11 O -0.32 -5.37 9.39 -19.69 -0.18 -5.55 16 12 C 0.07 1.06 6.72 -38.92 -0.26 0.80 16 13 C -0.15 -1.96 9.14 -39.17 -0.36 -2.32 16 14 C -0.16 -1.82 10.10 -39.44 -0.40 -2.22 16 15 C 0.08 1.00 11.17 -17.56 -0.20 0.80 16 16 N -0.44 -7.08 7.87 -12.22 -0.10 -7.17 16 17 C 0.34 5.35 7.45 -154.43 -1.15 4.20 16 18 N -0.66 -9.05 5.35 -15.67 -0.08 -9.13 16 19 C 0.71 10.09 8.64 -86.92 -0.75 9.34 16 20 O -0.51 -9.09 15.43 5.29 0.08 -9.01 16 21 N -0.53 -6.12 6.26 27.63 0.17 -5.95 16 22 N -0.53 -4.95 6.26 31.22 0.20 -4.75 16 23 C 0.52 5.11 7.95 -10.99 -0.09 5.02 16 24 O -0.54 -6.84 15.82 5.56 0.09 -6.75 16 25 C -0.14 -1.05 6.07 -27.88 -0.17 -1.22 16 26 C 0.09 0.74 6.34 37.16 0.24 0.98 16 27 O -0.57 -4.78 13.66 -35.23 -0.48 -5.26 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.94 7.70 -51.93 -0.40 0.54 16 32 H 0.05 0.94 7.70 -51.93 -0.40 0.54 16 33 H 0.15 1.82 6.44 -52.49 -0.34 1.48 16 34 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.42 4.82 5.97 -40.82 -0.24 4.58 16 37 H 0.44 5.09 8.10 -182.60 -1.48 3.61 16 38 H 0.43 3.22 6.70 -182.59 -1.22 1.99 16 39 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 42 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 43 H 0.39 1.47 9.12 45.56 0.42 1.89 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -34.72 375.02 -9.05 -43.77 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.59 Total: 8.14 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -3.52 Total: 4.85 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.92 Total: -50.94 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.50 Total: -26.57 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.72 -9.05 -43.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116737661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.167 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds