Wall clock time and date at job start Tue Mar 31 2020 20:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35983 * 116.99537 * 179.97438 * 11 10 9 13 13 C 1.38781 * 120.49767 * 0.02562 * 12 11 10 14 14 C 1.38796 * 118.44365 * 179.97438 * 13 12 11 15 15 C 1.38065 * 119.35732 * 359.97438 * 14 13 12 16 16 N 1.31970 * 120.95507 * 0.02562 * 15 14 13 17 17 C 1.32267 * 121.68834 * 359.65401 * 16 15 14 18 18 N 1.39586 * 119.73048 * 180.31240 * 17 16 15 19 19 C 1.34775 * 119.99657 * 0.32047 * 18 17 16 20 20 O 1.21589 * 119.99882 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00018 * 179.97438 * 19 18 17 22 22 N 1.40100 * 119.99845 * 359.97438 * 21 19 18 23 23 C 1.34776 * 119.99845 * 179.97438 * 22 21 19 24 24 O 1.21275 * 120.00135 * 0.02562 * 23 22 21 25 25 C 1.50699 * 119.99664 * 179.97438 * 23 22 21 26 26 C 1.53000 * 109.46954 * 180.02562 * 25 23 22 27 27 O 1.42897 * 109.47459 * 180.02562 * 26 25 23 28 28 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 30 30 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 31 31 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 32 32 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 33 33 H 1.07993 * 120.77594 * 359.97438 * 13 12 11 34 34 H 1.08005 * 120.31678 * 180.02562 * 14 13 12 35 35 H 1.08000 * 119.51984 * 179.97438 * 15 14 13 36 36 H 0.97000 * 120.00171 * 180.31262 * 18 17 16 37 37 H 0.96995 * 119.99998 * 179.97438 * 21 19 18 38 38 H 0.97004 * 119.99921 * 359.97438 * 22 21 19 39 39 H 1.09002 * 109.47363 * 299.99891 * 25 23 22 40 40 H 1.09002 * 109.47117 * 60.00239 * 25 23 22 41 41 H 1.09000 * 109.46952 * 299.99472 * 26 25 23 42 42 H 1.08994 * 109.47497 * 59.99690 * 26 25 23 43 43 H 0.96698 * 114.00799 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0401 -0.0004 13 6 3.6581 -5.9794 -0.0009 14 6 4.3719 -7.1697 -0.0008 15 6 3.6880 -8.3691 0.0003 16 7 2.3687 -8.3981 0.0008 17 6 1.6492 -7.2883 0.0070 18 7 0.2556 -7.3667 0.0138 19 6 -0.3515 -8.5699 0.0206 20 8 0.3147 -9.5870 0.0203 21 7 -1.6971 -8.6458 0.0277 22 7 -2.4648 -7.4738 0.0286 23 6 -3.8104 -7.5496 0.0352 24 8 -4.3567 -8.6323 0.0408 25 6 -4.6360 -6.2889 0.0368 26 6 -6.1221 -6.6527 0.0453 27 8 -6.9052 -5.4573 0.0461 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.8721 -3.6043 -0.8905 32 1 2.8721 -3.6042 0.8895 33 1 4.1696 -5.0282 -0.0013 34 1 5.4519 -7.1577 -0.0007 35 1 4.2408 -9.2968 0.0000 36 1 -0.2759 -6.5553 0.0138 37 1 -2.1341 -9.5117 0.0322 38 1 -2.0278 -6.6078 0.0245 39 1 -4.4010 -5.7017 0.9246 40 1 -4.4095 -5.7052 -0.8554 41 1 -6.3575 -7.2400 -0.8423 42 1 -6.3483 -7.2362 0.9376 43 1 -7.8596 -5.6122 0.0510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116737661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:46 Heat of formation + Delta-G solvation = -95.461198 kcal Electronic energy + Delta-G solvation = -28464.691560 eV Core-core repulsion = 24125.527834 eV Total energy + Delta-G solvation = -4339.163726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.31647 -41.35352 -40.41221 -39.12085 -37.79881 -36.91233 -36.06907 -35.41274 -33.24727 -32.86749 -32.21333 -31.24086 -30.18694 -27.13923 -25.34389 -24.88771 -24.18209 -22.97310 -22.11740 -21.91185 -20.47385 -19.52263 -19.23362 -18.72156 -18.06297 -17.82974 -17.45772 -17.39935 -17.09889 -16.73031 -16.59799 -16.48343 -16.02950 -15.69749 -15.44280 -15.18667 -14.92856 -14.90580 -14.74067 -14.32333 -14.13218 -13.62739 -13.28582 -13.08859 -12.79803 -12.71034 -12.62977 -12.43280 -12.28726 -12.01985 -11.99792 -11.68874 -11.59864 -11.39747 -11.34674 -10.92923 -10.56255 -10.43459 -10.33745 -9.64646 -8.87668 -8.22269 -6.33836 0.10476 0.29717 0.57507 1.25250 1.45599 1.47023 1.50172 1.54848 1.87122 2.11106 2.46722 2.87874 2.94401 3.13509 3.41993 3.62052 3.65676 3.87091 3.99574 4.06241 4.13547 4.26904 4.34210 4.36993 4.47333 4.54162 4.78997 4.83483 4.86265 4.92109 5.03561 5.15384 5.19827 5.31332 5.36806 5.56218 5.57794 5.77250 6.07127 6.12317 6.24198 6.35219 6.80581 6.83951 6.88411 7.12962 7.25129 7.36017 8.89666 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.006321 B = 0.003510 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4428.803015 B = 7975.191224 C =12372.931023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.030 3.970 10 C 0.083 3.917 11 O -0.327 6.327 12 C 0.047 3.953 13 C -0.146 4.146 14 C -0.142 4.142 15 C 0.075 3.925 16 N -0.473 5.473 17 C 0.323 3.677 18 N -0.655 5.655 19 C 0.709 3.291 20 O -0.552 6.552 21 N -0.524 5.524 22 N -0.522 5.522 23 C 0.530 3.470 24 O -0.567 6.567 25 C -0.133 4.133 26 C 0.094 3.906 27 O -0.589 6.589 28 H 0.265 0.735 29 H 0.005 0.995 30 H 0.005 0.995 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.159 0.841 34 H 0.177 0.823 35 H 0.187 0.813 36 H 0.422 0.578 37 H 0.445 0.555 38 H 0.434 0.566 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -12.761 0.063 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.087 0.913 9 C -0.007 4.007 10 C 0.008 3.992 11 O -0.240 6.240 12 C -0.004 4.004 13 C -0.173 4.173 14 C -0.162 4.162 15 C -0.082 4.082 16 N -0.188 5.188 17 C 0.091 3.909 18 N -0.307 5.307 19 C 0.408 3.592 20 O -0.422 6.422 21 N -0.281 5.281 22 N -0.275 5.275 23 C 0.318 3.682 24 O -0.444 6.444 25 C -0.174 4.174 26 C 0.016 3.984 27 O -0.399 6.399 28 H 0.074 0.926 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.177 0.823 34 H 0.194 0.806 35 H 0.204 0.796 36 H 0.261 0.739 37 H 0.292 0.708 38 H 0.278 0.722 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -2.521 -14.560 0.060 14.777 hybrid contribution -0.164 1.913 0.000 1.920 sum -2.686 -12.648 0.060 12.930 Atomic orbital electron populations 1.70068 1.07706 1.28092 1.50622 1.25865 0.95709 1.03114 0.94398 0.85499 0.78255 0.78068 0.79242 1.19115 1.21149 1.19126 1.21374 0.93840 0.91191 1.51974 0.91284 1.18937 0.94510 0.90691 0.96538 1.22983 0.95704 0.79522 1.00963 1.86002 1.36584 1.12951 1.88512 1.19618 0.92104 0.85944 1.02744 1.21915 0.91324 1.01909 1.02117 1.22306 1.03172 0.91019 0.99723 1.23052 0.87866 0.99902 0.97354 1.67617 1.09609 1.27162 1.14379 1.17568 0.83979 0.87270 1.02120 1.42358 1.04382 1.08466 1.75521 1.15735 0.80641 0.84120 0.78732 1.91106 1.60546 1.34256 1.56273 1.44490 1.00474 1.02666 1.80493 1.45104 1.04087 1.01436 1.76879 1.21066 0.80056 0.92255 0.74844 1.90738 1.71378 1.31119 1.51197 1.21464 0.93805 0.93921 1.08181 1.21694 0.89199 0.86193 1.01341 1.86374 1.23639 1.32037 1.97812 0.92577 0.97678 0.97682 0.91763 0.91771 0.82309 0.80599 0.79647 0.73892 0.70831 0.72230 0.85773 0.85771 0.92718 0.92705 0.74615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.04 13.29 21.45 0.28 -51.76 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.96 40.66 29.54 68.60 2.03 42.69 16 4 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.29 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.55 -27.87 9.11 25.60 0.23 -27.64 16 8 H 0.07 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.44 5.34 29.85 0.16 1.60 16 10 C 0.08 2.97 4.70 71.98 0.34 3.31 16 11 O -0.33 -10.93 9.39 -93.36 -0.88 -11.80 16 12 C 0.05 1.41 6.72 22.70 0.15 1.56 16 13 C -0.15 -3.59 9.14 22.53 0.21 -3.38 16 14 C -0.14 -2.79 10.10 22.36 0.23 -2.56 16 15 C 0.07 1.75 11.17 84.63 0.95 2.69 16 16 N -0.47 -14.80 7.87 -192.58 -1.52 -16.31 16 17 C 0.32 10.03 7.45 132.99 0.99 11.02 16 18 N -0.65 -18.17 5.35 -321.76 -1.72 -19.90 16 19 C 0.71 20.58 8.64 179.06 1.55 22.13 16 20 O -0.55 -19.89 15.43 -4.00 -0.06 -19.96 16 21 N -0.52 -12.27 6.26 -184.75 -1.16 -13.43 16 22 N -0.52 -9.72 6.26 -173.54 -1.09 -10.80 16 23 C 0.53 10.20 7.95 87.66 0.70 10.89 16 24 O -0.57 -14.47 15.82 -3.01 -0.05 -14.52 16 25 C -0.13 -1.96 6.07 29.85 0.18 -1.78 16 26 C 0.09 1.46 6.34 71.98 0.46 1.91 16 27 O -0.59 -9.32 13.66 -148.98 -2.03 -11.35 16 28 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.06 2.16 7.70 -2.39 -0.02 2.14 16 32 H 0.06 2.16 7.70 -2.39 -0.02 2.14 16 33 H 0.16 3.45 6.44 -2.91 -0.02 3.43 16 34 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.42 9.96 5.97 -92.71 -0.55 9.41 16 37 H 0.44 10.46 8.10 -213.33 -1.73 8.73 16 38 H 0.43 6.52 6.70 -213.32 -1.43 5.09 16 39 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 42 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 43 H 0.40 2.75 9.12 -74.06 -0.68 2.07 16 Total: -1.00 -75.07 375.02 -2.87 -77.95 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: -3.28 Total: 28.55 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 6.59 Total: 20.65 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -5.20 Total: -112.20 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -3.02 Total: -57.63 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -75.07 -2.87 -77.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116737661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.515 kcal (2) G-P(sol) polarization free energy of solvation -75.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds