Wall clock time and date at job start Tue Mar 31 2020 21:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 N 1.46499 * 109.47547 * 179.72203 * 5 3 2 7 7 N 1.40057 * 125.99251 * 269.69140 * 6 5 3 8 8 C 1.30822 * 108.36458 * 179.85315 * 7 6 5 9 9 C 1.40341 * 108.20959 * 0.39924 * 8 7 6 10 10 N 1.40482 * 126.11449 * 179.71981 * 9 8 7 11 11 C 1.34780 * 120.00125 * 0.02808 * 10 9 8 12 12 O 1.21408 * 119.99617 * 359.97438 * 11 10 9 13 13 C 1.49326 * 120.00099 * 179.97438 * 11 10 9 14 14 O 1.21359 * 119.99746 * 0.02562 * 13 11 10 15 15 N 1.34767 * 119.99850 * 179.97438 * 13 11 10 16 16 C 1.46511 * 120.00048 * 180.02562 * 15 13 11 17 17 C 1.52995 * 109.47076 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.46862 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99753 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00093 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00121 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 120.00235 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47112 * 89.99493 * 22 20 18 24 24 H 1.48490 * 109.47352 * 210.00265 * 22 20 18 25 25 H 1.48506 * 109.46659 * 330.00096 * 22 20 18 26 26 C 1.35222 * 125.99560 * 89.99864 * 6 5 3 27 27 C 1.50700 * 126.17787 * 359.97438 * 26 6 5 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 30 30 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 31 31 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 32 32 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 33 33 H 1.08006 * 125.89431 * 180.16472 * 8 7 6 34 34 H 0.96995 * 119.99704 * 180.02562 * 10 9 8 35 35 H 0.97005 * 120.00362 * 0.02562 * 15 13 11 36 36 H 1.08994 * 109.46377 * 300.00267 * 16 15 13 37 37 H 1.09002 * 109.46804 * 60.00042 * 16 15 13 38 38 H 1.09001 * 109.47177 * 300.00129 * 17 16 15 39 39 H 1.09002 * 109.47384 * 60.00257 * 17 16 15 40 40 H 0.97002 * 119.99711 * 180.02562 * 21 20 18 41 41 H 1.08997 * 109.47027 * 90.00127 * 27 26 6 42 42 H 1.09000 * 109.47043 * 209.99950 * 27 26 6 43 43 H 1.08998 * 109.47050 * 329.99793 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 7 3.9816 2.6799 -0.0117 7 7 4.2163 3.4644 -1.1479 8 6 4.5663 4.6626 -0.7563 9 6 4.5755 4.6802 0.6469 10 7 4.9034 5.7785 1.4591 11 6 5.2495 6.9533 0.8964 12 8 5.2782 7.0621 -0.3125 13 6 5.5975 8.1209 1.7597 14 8 5.5692 8.0119 2.9680 15 7 5.9440 9.2955 1.1969 16 6 6.2860 10.4410 2.0439 17 6 6.6382 11.6403 1.1617 18 6 6.9906 12.8184 2.0330 19 1 6.9662 12.7211 3.1083 20 6 7.3452 14.0199 1.4574 21 7 7.6532 15.0479 2.2177 22 14 7.3881 14.1880 -0.4026 23 1 6.0573 14.6308 -0.8905 24 1 8.4145 15.1904 -0.7856 25 1 7.7266 12.8759 -1.0104 26 6 4.2113 3.4449 1.0794 27 6 4.0857 3.0065 2.5158 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 3.9595 0.7833 0.8836 32 1 3.9525 0.7785 -0.8964 33 1 4.8100 5.4937 -1.4017 34 1 4.8808 5.6914 2.4249 35 1 5.9669 9.3825 0.2311 36 1 5.4342 10.6927 2.6757 37 1 7.1408 10.1869 2.6707 38 1 7.4898 11.3888 0.5296 39 1 5.7831 11.8942 0.5353 40 1 7.9023 15.8933 1.8126 41 1 5.0407 2.6091 2.8592 42 1 3.8042 3.8598 3.1328 43 1 3.3211 2.2336 2.5942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116895394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:32 Heat of formation + Delta-G solvation = -67.100515 kcal Electronic energy + Delta-G solvation = -28007.250390 eV Core-core repulsion = 23669.316475 eV Total energy + Delta-G solvation = -4337.933915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.03343 -40.94007 -40.31729 -38.42034 -37.12735 -35.71145 -34.86777 -33.90617 -32.82879 -31.91839 -30.32024 -29.12730 -27.49814 -27.18331 -25.75745 -23.78750 -22.59888 -21.54233 -20.88254 -20.44927 -19.95948 -18.48330 -18.22242 -17.72729 -17.24674 -17.04895 -16.87384 -16.26890 -16.04176 -15.77922 -15.29413 -15.00232 -14.50702 -14.40641 -14.18015 -14.09001 -13.99775 -13.76409 -13.34770 -13.24815 -13.08555 -12.96843 -12.69432 -12.62811 -12.61816 -11.58246 -11.47228 -11.42025 -11.41464 -11.25559 -11.10306 -11.00421 -10.45198 -10.31143 -9.96128 -9.67740 -9.51086 -9.33327 -8.81601 -8.61684 -8.03291 -6.12543 -4.13421 1.01815 1.44269 1.51446 1.72160 2.26594 2.48636 2.56170 3.27087 3.35185 3.35887 3.36848 3.73212 3.93685 4.05624 4.15335 4.37829 4.38592 4.48896 4.54438 4.56289 4.63068 4.84712 4.96704 4.99192 5.13718 5.20689 5.31842 5.44268 5.69140 5.79465 5.94906 6.08843 6.39076 6.44140 6.47749 6.52308 6.88434 7.05725 7.07041 7.17684 7.28844 7.51812 7.61849 7.78399 8.14348 8.41187 8.90578 9.47419 11.00130 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029280 B = 0.001784 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.046218 B =15691.704467 C =16070.696304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.438 3.562 4 O -0.482 6.482 5 C 0.153 3.847 6 N -0.365 5.365 7 N -0.276 5.276 8 C 0.069 3.931 9 C 0.006 3.994 10 N -0.614 5.614 11 C 0.510 3.490 12 O -0.510 6.510 13 C 0.505 3.495 14 O -0.527 6.527 15 N -0.688 5.688 16 C 0.127 3.873 17 C -0.024 4.024 18 C -0.525 4.525 19 H 0.077 0.923 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.265 1.265 26 C 0.063 3.937 27 C -0.093 4.093 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.212 0.788 34 H 0.421 0.579 35 H 0.410 0.590 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.021 0.979 40 H 0.265 0.735 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.445 -34.885 -2.973 36.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.278 3.722 4 O -0.367 6.367 5 C 0.028 3.972 6 N -0.151 5.151 7 N -0.096 5.096 8 C -0.119 4.119 9 C -0.098 4.098 10 N -0.261 5.261 11 C 0.292 3.708 12 O -0.384 6.384 13 C 0.284 3.716 14 O -0.405 6.405 15 N -0.339 5.339 16 C 0.006 3.994 17 C -0.062 4.062 18 C -0.563 4.563 19 H 0.095 0.905 20 C -0.131 4.131 21 N -0.535 5.535 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.189 1.189 26 C -0.064 4.064 27 C -0.151 4.151 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.159 0.841 33 H 0.228 0.772 34 H 0.259 0.741 35 H 0.246 0.754 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.862 -35.177 -3.946 37.026 hybrid contribution -0.155 0.842 -0.269 0.897 sum -11.017 -34.334 -4.215 36.304 Atomic orbital electron populations 1.23338 0.75413 1.04047 1.02921 1.86468 1.24113 1.32629 1.84210 1.24077 0.92311 0.82120 0.73735 1.90784 1.66531 1.36224 1.43159 1.20869 0.88096 0.79659 1.08535 1.47450 1.54595 1.09243 1.03780 1.77459 1.21997 1.03235 1.06875 1.24587 0.98324 0.95681 0.93348 1.17352 1.13521 0.87736 0.91236 1.42423 1.65150 1.08115 1.10444 1.20460 0.78062 0.83854 0.88395 1.90642 1.50379 1.83125 1.14263 1.19654 0.79939 0.84156 0.87887 1.90760 1.52332 1.83578 1.13820 1.46196 1.64904 1.10572 1.12185 1.21746 1.00610 0.83504 0.93588 1.19831 0.96928 0.93153 0.96278 1.20868 1.46910 0.93676 0.94844 0.90530 1.24980 0.94352 0.95607 0.98202 1.69900 1.45990 1.02200 1.35425 0.86771 0.78158 0.78340 0.85976 1.20152 1.21233 1.18922 1.20297 1.04368 0.90862 0.90917 1.20463 1.03228 1.03067 0.88362 0.87634 0.91649 0.91630 0.84555 0.84102 0.77223 0.74106 0.75430 0.91151 0.91108 0.95660 0.96097 0.92501 0.89507 0.89420 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.16 10.56 101.05 1.07 1.23 16 2 O -0.36 -2.17 10.57 -39.26 -0.41 -2.58 16 3 C 0.44 3.40 8.03 36.00 0.29 3.69 16 4 O -0.48 -5.82 16.18 -18.76 -0.30 -6.12 16 5 C 0.15 0.82 6.66 -5.20 -0.03 0.78 16 6 N -0.37 -3.53 3.11 -58.11 -0.18 -3.71 16 7 N -0.28 -3.49 12.56 30.72 0.39 -3.10 16 8 C 0.07 0.90 10.84 -17.19 -0.19 0.72 16 9 C 0.01 0.07 6.86 -83.96 -0.58 -0.51 16 10 N -0.61 -7.21 5.45 -10.48 -0.06 -7.27 16 11 C 0.51 7.18 7.86 -11.64 -0.09 7.09 16 12 O -0.51 -7.76 13.63 5.45 0.07 -7.69 16 13 C 0.50 8.01 7.88 -11.65 -0.09 7.91 16 14 O -0.53 -9.28 16.48 5.49 0.09 -9.19 16 15 N -0.69 -11.40 5.55 -60.77 -0.34 -11.74 16 16 C 0.13 2.48 5.61 -4.04 -0.02 2.45 16 17 C -0.02 -0.54 4.16 -27.88 -0.12 -0.66 16 18 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 19 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 21 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 22 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 26 C 0.06 0.60 6.96 -81.95 -0.57 0.03 16 27 C -0.09 -0.50 9.72 36.01 0.35 -0.15 16 28 H 0.11 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 30 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.14 0.21 7.67 -51.93 -0.40 -0.19 16 32 H 0.14 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.21 2.83 5.92 -52.48 -0.31 2.52 16 34 H 0.42 4.15 7.55 -40.82 -0.31 3.84 16 35 H 0.41 6.26 7.94 -40.82 -0.32 5.93 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.03 0.56 7.20 -51.93 -0.37 0.19 16 39 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.45 7.61 -51.93 -0.39 0.06 16 43 H 0.07 0.30 7.73 -51.93 -0.40 -0.10 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -36.49 378.42 -4.80 -41.29 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.45 Total: 4.57 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -0.41 Total: 9.73 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.58 Total: -52.07 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.55 Total: -25.59 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.49 -4.80 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116895394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.815 kcal (2) G-P(sol) polarization free energy of solvation -36.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds