Wall clock time and date at job start Tue Mar 31 2020 21:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 N 1.46499 * 109.47547 * 179.72203 * 5 3 2 7 7 N 1.40057 * 125.99251 * 269.69140 * 6 5 3 8 8 C 1.30822 * 108.36458 * 179.85315 * 7 6 5 9 9 C 1.40341 * 108.20959 * 0.39924 * 8 7 6 10 10 N 1.40482 * 126.11449 * 179.71981 * 9 8 7 11 11 C 1.34780 * 120.00125 * 0.02808 * 10 9 8 12 12 O 1.21408 * 119.99617 * 359.97438 * 11 10 9 13 13 C 1.49326 * 120.00099 * 179.97438 * 11 10 9 14 14 O 1.21359 * 119.99746 * 0.02562 * 13 11 10 15 15 N 1.34767 * 119.99850 * 179.97438 * 13 11 10 16 16 C 1.46511 * 120.00048 * 180.02562 * 15 13 11 17 17 C 1.52995 * 109.47076 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.46862 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99753 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00093 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00121 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 120.00235 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47112 * 89.99493 * 22 20 18 24 24 H 1.48490 * 109.47352 * 210.00265 * 22 20 18 25 25 H 1.48506 * 109.46659 * 330.00096 * 22 20 18 26 26 C 1.35222 * 125.99560 * 89.99864 * 6 5 3 27 27 C 1.50700 * 126.17787 * 359.97438 * 26 6 5 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 30 30 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 31 31 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 32 32 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 33 33 H 1.08006 * 125.89431 * 180.16472 * 8 7 6 34 34 H 0.96995 * 119.99704 * 180.02562 * 10 9 8 35 35 H 0.97005 * 120.00362 * 0.02562 * 15 13 11 36 36 H 1.08994 * 109.46377 * 300.00267 * 16 15 13 37 37 H 1.09002 * 109.46804 * 60.00042 * 16 15 13 38 38 H 1.09001 * 109.47177 * 300.00129 * 17 16 15 39 39 H 1.09002 * 109.47384 * 60.00257 * 17 16 15 40 40 H 0.97002 * 119.99711 * 180.02562 * 21 20 18 41 41 H 1.08997 * 109.47027 * 90.00127 * 27 26 6 42 42 H 1.09000 * 109.47043 * 209.99950 * 27 26 6 43 43 H 1.08998 * 109.47050 * 329.99793 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 7 3.9816 2.6799 -0.0117 7 7 4.2163 3.4644 -1.1479 8 6 4.5663 4.6626 -0.7563 9 6 4.5755 4.6802 0.6469 10 7 4.9034 5.7785 1.4591 11 6 5.2495 6.9533 0.8964 12 8 5.2782 7.0621 -0.3125 13 6 5.5975 8.1209 1.7597 14 8 5.5692 8.0119 2.9680 15 7 5.9440 9.2955 1.1969 16 6 6.2860 10.4410 2.0439 17 6 6.6382 11.6403 1.1617 18 6 6.9906 12.8184 2.0330 19 1 6.9662 12.7211 3.1083 20 6 7.3452 14.0199 1.4574 21 7 7.6532 15.0479 2.2177 22 14 7.3881 14.1880 -0.4026 23 1 6.0573 14.6308 -0.8905 24 1 8.4145 15.1904 -0.7856 25 1 7.7266 12.8759 -1.0104 26 6 4.2113 3.4449 1.0794 27 6 4.0857 3.0065 2.5158 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 3.9595 0.7833 0.8836 32 1 3.9525 0.7785 -0.8964 33 1 4.8100 5.4937 -1.4017 34 1 4.8808 5.6914 2.4249 35 1 5.9669 9.3825 0.2311 36 1 5.4342 10.6927 2.6757 37 1 7.1408 10.1869 2.6707 38 1 7.4898 11.3888 0.5296 39 1 5.7831 11.8942 0.5353 40 1 7.9023 15.8933 1.8126 41 1 5.0407 2.6091 2.8592 42 1 3.8042 3.8598 3.1328 43 1 3.3211 2.2336 2.5942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116895394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:31 Heat of formation + Delta-G solvation = -95.704499 kcal Electronic energy + Delta-G solvation = -28008.490752 eV Core-core repulsion = 23669.316475 eV Total energy + Delta-G solvation = -4339.174277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.84066 -41.73187 -41.29792 -39.62741 -37.72620 -37.03011 -36.07913 -34.78600 -34.60581 -32.57905 -32.12426 -29.72143 -28.35935 -27.70088 -27.22136 -25.15727 -23.36877 -22.74249 -22.30446 -21.27218 -21.03472 -19.35239 -19.03625 -19.01067 -18.51428 -17.84152 -17.62346 -17.37278 -17.20219 -16.59237 -16.33424 -16.20135 -16.16117 -15.62255 -15.25947 -15.11368 -14.68630 -14.66976 -14.58078 -14.43828 -13.98463 -13.65800 -13.49785 -13.38176 -13.18007 -13.06656 -13.04949 -12.74147 -12.25676 -12.20687 -12.17457 -11.92353 -11.90364 -11.77638 -11.77448 -11.49533 -10.78055 -10.74100 -10.44561 -10.24820 -8.88922 -8.29263 -6.35779 0.06798 0.55916 0.94888 0.97373 1.32263 1.40601 1.41976 1.53011 1.58627 1.83131 2.21315 2.37109 2.60854 3.06228 3.34500 3.44159 3.56579 3.61536 3.87393 4.08560 4.23568 4.24887 4.26901 4.28993 4.29384 4.41316 4.66415 4.67864 4.74500 4.80927 4.82416 4.98221 4.99833 5.19767 5.30779 5.39007 5.54062 5.59979 5.77608 5.88706 6.21056 6.29151 6.46341 6.52763 6.68249 6.73741 6.88829 7.28888 8.86873 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029280 B = 0.001784 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.046218 B =15691.704467 C =16070.696304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.351 6.351 3 C 0.443 3.557 4 O -0.533 6.533 5 C 0.144 3.856 6 N -0.361 5.361 7 N -0.303 5.303 8 C 0.051 3.949 9 C -0.031 4.031 10 N -0.596 5.596 11 C 0.513 3.487 12 O -0.525 6.525 13 C 0.510 3.490 14 O -0.545 6.545 15 N -0.685 5.685 16 C 0.142 3.858 17 C -0.018 4.018 18 C -0.535 4.535 19 H 0.037 0.963 20 C 0.009 3.991 21 N -0.947 5.947 22 Si 0.951 3.049 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.241 1.241 26 C 0.086 3.914 27 C -0.096 4.096 28 H 0.137 0.863 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.185 0.815 32 H 0.164 0.836 33 H 0.198 0.802 34 H 0.430 0.570 35 H 0.418 0.582 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.268 0.732 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.811 -38.252 -3.706 39.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.267 6.267 3 C 0.286 3.714 4 O -0.422 6.422 5 C 0.022 3.978 6 N -0.146 5.146 7 N -0.124 5.124 8 C -0.137 4.137 9 C -0.134 4.134 10 N -0.244 5.244 11 C 0.295 3.705 12 O -0.401 6.401 13 C 0.290 3.710 14 O -0.423 6.423 15 N -0.337 5.337 16 C 0.019 3.981 17 C -0.056 4.056 18 C -0.574 4.574 19 H 0.055 0.945 20 C -0.189 4.189 21 N -0.587 5.587 22 Si 0.774 3.226 23 H -0.192 1.192 24 H -0.212 1.212 25 H -0.164 1.164 26 C -0.043 4.043 27 C -0.154 4.154 28 H 0.155 0.845 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.202 0.798 32 H 0.182 0.818 33 H 0.214 0.786 34 H 0.270 0.730 35 H 0.256 0.744 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.133 0.867 42 H 0.109 0.891 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.246 -38.635 -4.683 40.510 hybrid contribution -0.128 1.684 0.082 1.691 sum -11.373 -36.951 -4.601 38.935 Atomic orbital electron populations 1.23568 0.74499 1.05959 1.02313 1.86476 1.25010 1.31615 1.83560 1.24491 0.93094 0.81747 0.72108 1.90778 1.67751 1.37828 1.45815 1.21476 0.86615 0.77728 1.11989 1.47821 1.53266 1.10454 1.03055 1.77378 1.22981 1.03497 1.08516 1.24467 0.99220 0.95855 0.94114 1.17510 1.16341 0.88706 0.90869 1.42214 1.63871 1.07398 1.10875 1.19968 0.78783 0.83946 0.87814 1.90652 1.51548 1.83322 1.14567 1.19909 0.78977 0.84312 0.87785 1.90749 1.52909 1.83933 1.14733 1.45950 1.65298 1.10137 1.12297 1.21309 0.99950 0.83686 0.93133 1.19704 0.97654 0.92276 0.95990 1.21204 1.46488 0.95768 0.93911 0.94455 1.25965 0.93932 0.95114 1.03868 1.70056 1.47686 1.03023 1.37952 0.85652 0.78448 0.79343 0.79170 1.19233 1.21194 1.16372 1.20942 1.00967 0.89786 0.92606 1.20711 1.05386 1.03900 0.85372 0.84454 0.91922 0.92673 0.79786 0.81842 0.78575 0.73041 0.74438 0.92079 0.91917 0.94543 0.94796 0.92354 0.86709 0.89054 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 113.37 1.20 1.41 16 2 O -0.35 -3.40 10.57 -51.41 -0.54 -3.94 16 3 C 0.44 5.96 8.03 71.23 0.57 6.53 16 4 O -0.53 -12.44 16.18 21.94 0.36 -12.08 16 5 C 0.14 1.07 6.66 85.63 0.57 1.64 16 6 N -0.36 -6.22 3.11 -337.78 -1.05 -7.27 16 7 N -0.30 -7.51 12.56 -56.71 -0.71 -8.22 16 8 C 0.05 1.34 10.84 85.36 0.93 2.27 16 9 C -0.03 -0.70 6.86 37.71 0.26 -0.44 16 10 N -0.60 -13.44 5.45 -305.41 -1.67 -15.10 16 11 C 0.51 14.19 7.86 87.23 0.69 14.88 16 12 O -0.52 -15.95 13.63 -3.43 -0.05 -16.00 16 13 C 0.51 15.88 7.88 87.23 0.69 16.57 16 14 O -0.54 -18.88 16.48 -3.27 -0.05 -18.93 16 15 N -0.68 -22.18 5.55 -464.54 -2.58 -24.76 16 16 C 0.14 5.52 5.61 86.38 0.48 6.00 16 17 C -0.02 -0.81 4.16 29.85 0.12 -0.69 16 18 C -0.54 -29.97 9.66 25.60 0.25 -29.73 16 19 H 0.04 2.31 7.99 -2.91 -0.02 2.28 16 20 C 0.01 0.50 5.47 84.65 0.46 0.96 16 21 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 22 Si 0.95 42.84 27.47 68.60 1.88 44.72 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 26 C 0.09 1.43 6.96 41.48 0.29 1.72 16 27 C -0.10 -0.68 9.72 71.24 0.69 0.01 16 28 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.06 0.49 8.13 -2.39 -0.02 0.47 16 30 H 0.05 0.52 8.13 -2.38 -0.02 0.50 16 31 H 0.19 -0.40 7.67 -2.38 -0.02 -0.41 16 32 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.20 5.55 5.92 -2.91 -0.02 5.54 16 34 H 0.43 7.85 7.55 -92.71 -0.70 7.15 16 35 H 0.42 12.25 7.94 -92.70 -0.74 11.51 16 36 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 39 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.11 0.27 8.14 -2.39 -0.02 0.26 16 42 H 0.09 0.66 7.61 -2.39 -0.02 0.64 16 43 H 0.09 0.36 7.73 -2.39 -0.02 0.35 16 Total: -1.00 -82.18 378.42 2.68 -79.50 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -0.41 Total: 19.17 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 7.20 Total: 21.13 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -5.70 Total: -113.57 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.29 Total: -50.96 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Total: -82.18 2.68 -79.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116895394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.201 kcal (2) G-P(sol) polarization free energy of solvation -82.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds