Wall clock time and date at job start Tue Mar 31 2020 22:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29945 * 126.28644 * 2 1 4 4 O 1.21302 * 110.25421 * 179.97438 * 3 2 1 5 5 C 1.33654 * 109.80890 * 0.02562 * 4 3 2 6 6 C 1.50691 * 126.55189 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47489 * 195.02298 * 6 5 4 8 8 C 1.53001 * 109.47229 * 75.01998 * 6 5 4 9 9 N 1.46508 * 109.47126 * 315.02280 * 6 5 4 10 10 C 1.34774 * 120.00161 * 204.99774 * 9 6 5 11 11 O 1.21353 * 120.00124 * 0.02562 * 10 9 6 12 12 C 1.49450 * 120.00149 * 179.97438 * 10 9 6 13 13 O 1.21349 * 120.00143 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99780 * 180.02562 * 12 10 9 15 15 C 1.47016 * 125.65327 * 359.95847 * 14 12 10 16 16 C 1.54320 * 107.27403 * 181.09221 * 15 14 12 17 17 C 1.55158 * 102.94128 * 22.19567 * 16 15 14 18 18 O 1.42903 * 111.00510 * 82.57155 * 17 16 15 19 19 C 1.50697 * 111.03748 * 206.40572 * 17 16 15 20 20 H 1.08001 * 120.00221 * 117.68052 * 19 17 16 21 21 C 1.37875 * 120.00399 * 297.68120 * 19 17 16 22 22 N 1.31515 * 120.00351 * 184.89487 * 21 19 17 23 23 Si 1.86808 * 119.99660 * 4.89357 * 21 19 17 24 24 H 1.48501 * 109.47151 * 84.75876 * 23 21 19 25 25 H 1.48501 * 109.46747 * 204.75910 * 23 21 19 26 26 H 1.48499 * 109.47163 * 324.75722 * 23 21 19 27 27 C 1.47431 * 125.64496 * 180.02562 * 14 12 10 28 28 N 1.31131 * 106.89650 * 0.22422 * 5 4 3 29 29 H 1.08994 * 109.47340 * 89.97860 * 1 2 3 30 30 H 1.09005 * 109.47142 * 209.97340 * 1 2 3 31 31 H 1.09001 * 109.47107 * 329.97091 * 1 2 3 32 32 H 1.08995 * 109.47606 * 299.99981 * 8 6 5 33 33 H 1.09002 * 109.46550 * 60.00747 * 8 6 5 34 34 H 1.09001 * 109.47231 * 179.97438 * 8 6 5 35 35 H 0.97001 * 119.99844 * 25.00440 * 9 6 5 36 36 H 1.09000 * 109.88684 * 300.51334 * 15 14 12 37 37 H 1.09001 * 109.88149 * 61.67644 * 15 14 12 38 38 H 1.09003 * 110.72714 * 263.83263 * 16 15 14 39 39 H 1.09003 * 110.72155 * 140.55580 * 16 15 14 40 40 H 0.96698 * 114.00062 * 186.35118 * 18 17 16 41 41 H 0.96998 * 119.99767 * 179.97438 * 22 21 19 42 42 H 1.08996 * 110.36542 * 36.99320 * 27 14 12 43 43 H 1.09001 * 110.36629 * 274.67241 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7124 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7969 -1.4370 0.0003 7 1 4.5652 -2.4682 -0.2663 8 6 5.4275 -1.3997 1.3938 9 7 5.7365 -0.8796 -0.9760 10 6 6.6835 -1.6660 -1.5248 11 8 6.7577 -2.8359 -1.2107 12 6 7.6416 -1.0976 -2.5210 13 8 7.5672 0.0720 -2.8355 14 7 8.5882 -1.8842 -3.0702 15 6 8.7908 -3.3112 -2.7802 16 6 9.9995 -3.7816 -3.6163 17 6 10.7613 -2.4600 -3.9000 18 8 11.5957 -2.1027 -2.7963 19 6 11.5653 -2.5610 -5.1706 20 1 11.3446 -1.9087 -6.0026 21 6 12.5826 -3.4862 -5.2710 22 7 13.3464 -3.5102 -6.3414 23 14 12.8761 -4.7057 -3.8866 24 1 11.9794 -5.8766 -4.0600 25 1 14.2906 -5.1567 -3.9160 26 1 12.5916 -4.0530 -2.5835 27 6 9.5931 -1.4557 -4.0602 28 7 2.3030 -1.0841 -0.0052 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5143 32 1 5.6594 -0.3686 1.6603 33 1 4.7285 -1.8145 2.1200 34 1 6.3438 -1.9902 1.3938 35 1 5.6771 0.0554 -1.2272 36 1 8.9983 -3.4481 -1.7190 37 1 7.9025 -3.8765 -3.0622 38 1 9.6688 -4.2434 -4.5467 39 1 10.6210 -4.4694 -3.0428 40 1 12.0166 -1.2367 -2.8856 41 1 14.0623 -4.1608 -6.4118 42 1 9.9313 -0.4425 -3.8433 43 1 9.1808 -1.5114 -5.0677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118152976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:16 Heat of formation + Delta-G solvation = -26.179427 kcal Electronic energy + Delta-G solvation = -29430.376370 eV Core-core repulsion = 25094.216927 eV Total energy + Delta-G solvation = -4336.159443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.08272 -40.80177 -39.05668 -37.60179 -36.74726 -36.36004 -34.61585 -33.15429 -32.48077 -30.94895 -30.52307 -29.58089 -28.53250 -26.40725 -25.43354 -24.08597 -23.59300 -22.31544 -21.11275 -20.33161 -19.81630 -18.62787 -18.32955 -17.61695 -17.40303 -16.90462 -16.15064 -16.00242 -15.57065 -15.02178 -14.91612 -14.56807 -14.45872 -14.43507 -14.07455 -13.76254 -13.47879 -13.41062 -13.13094 -12.94134 -12.79698 -12.71242 -12.68436 -12.16023 -12.10067 -11.86132 -11.83070 -11.50370 -11.41448 -11.36140 -11.10845 -10.58035 -10.44489 -10.39495 -10.17517 -9.78332 -9.48506 -9.08586 -8.83813 -8.61562 -8.27906 -6.26456 -4.39275 0.58231 1.40913 1.68155 2.12876 2.20402 3.11371 3.23558 3.27452 3.39554 3.48772 3.57480 3.59349 4.23543 4.35237 4.38182 4.43700 4.66898 4.90755 4.92139 5.02560 5.03372 5.12049 5.12984 5.27190 5.30969 5.39256 5.50005 5.59915 5.65551 5.67149 5.74708 5.95247 6.06561 6.27649 6.40431 6.53217 6.60673 6.78474 7.03804 7.37775 7.47001 7.62975 7.67518 8.05228 8.13512 8.67496 8.84089 9.36355 10.83614 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031121 B = 0.002326 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.490503 B =12034.818543 C =12331.220149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.169 3.831 3 N -0.378 5.378 4 O 0.085 5.915 5 C 0.175 3.825 6 C 0.244 3.756 7 H 0.138 0.862 8 C -0.166 4.166 9 N -0.708 5.708 10 C 0.520 3.480 11 O -0.503 6.503 12 C 0.514 3.486 13 O -0.533 6.533 14 N -0.572 5.572 15 C 0.109 3.891 16 C -0.131 4.131 17 C 0.217 3.783 18 O -0.570 6.570 19 C -0.552 4.552 20 H 0.080 0.920 21 C 0.091 3.909 22 N -0.884 5.884 23 Si 0.875 3.125 24 H -0.281 1.281 25 H -0.299 1.299 26 H -0.229 1.229 27 C 0.090 3.910 28 N -0.467 5.467 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.418 0.582 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.365 0.635 41 H 0.268 0.732 42 H 0.076 0.924 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.665 4.168 14.557 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 N -0.086 5.086 4 O 0.026 5.974 5 C -0.047 4.047 6 C 0.137 3.863 7 H 0.156 0.844 8 C -0.224 4.224 9 N -0.365 5.365 10 C 0.302 3.698 11 O -0.376 6.376 12 C 0.296 3.704 13 O -0.412 6.412 14 N -0.304 5.304 15 C -0.013 4.013 16 C -0.169 4.169 17 C 0.176 3.824 18 O -0.376 6.376 19 C -0.590 4.590 20 H 0.098 0.902 21 C -0.115 4.115 22 N -0.520 5.520 23 Si 0.702 3.298 24 H -0.208 1.208 25 H -0.227 1.227 26 H -0.152 1.152 27 C -0.031 4.031 28 N -0.201 5.201 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.256 0.744 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.212 0.788 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.406 3.811 14.755 26.277 hybrid contribution 0.448 0.224 0.162 0.526 sum -20.959 4.035 14.917 26.040 Atomic orbital electron populations 1.20179 0.82549 1.04854 1.04589 1.26000 1.00782 0.83186 1.00383 1.74675 0.89216 1.23753 1.20919 1.85312 1.22565 1.24334 1.65210 1.28748 0.96805 0.82438 0.96727 1.19388 0.79463 0.96010 0.91431 0.84435 1.22282 1.02702 1.04262 0.93200 1.45725 1.32005 1.15301 1.43501 1.20319 0.81622 0.86100 0.81788 1.90781 1.70481 1.15821 1.60538 1.19362 0.82217 0.85977 0.82820 1.90755 1.72146 1.15768 1.62490 1.48444 1.29522 1.11790 1.40613 1.22254 0.98881 0.79525 1.00661 1.23076 0.94976 0.98778 1.00072 1.20134 0.86475 0.89099 0.86675 1.86507 1.65347 1.39721 1.46059 1.21072 1.17128 1.22119 0.98664 0.90200 1.24928 0.94331 0.96782 0.95460 1.69923 1.18354 1.35425 1.28309 0.87070 0.76438 0.80806 0.85471 1.20797 1.22663 1.15189 1.23269 0.88733 1.00235 0.90895 1.71896 0.99252 1.29493 1.19464 0.89077 0.88813 0.89310 0.90958 0.90258 0.89240 0.74435 0.90713 0.91059 0.89115 0.90534 0.78771 0.92250 0.90570 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.00 0.38 0.03 16 2 C 0.17 1.63 8.22 -156.37 -1.28 0.35 16 3 N -0.38 -4.13 12.16 30.90 0.38 -3.76 16 4 O 0.08 0.87 11.13 18.07 0.20 1.08 16 5 C 0.17 1.68 7.26 -13.06 -0.09 1.58 16 6 C 0.24 2.13 3.12 -69.08 -0.22 1.91 16 7 H 0.14 1.24 7.58 -51.93 -0.39 0.84 16 8 C -0.17 -1.17 9.47 37.16 0.35 -0.81 16 9 N -0.71 -7.43 5.06 -55.36 -0.28 -7.71 16 10 C 0.52 7.07 7.82 -11.59 -0.09 6.98 16 11 O -0.50 -7.38 13.79 5.49 0.08 -7.31 16 12 C 0.51 8.45 7.91 -11.59 -0.09 8.36 16 13 O -0.53 -9.57 16.73 5.50 0.09 -9.48 16 14 N -0.57 -10.08 3.33 -171.05 -0.57 -10.64 16 15 C 0.11 1.87 5.49 -3.07 -0.02 1.85 16 16 C -0.13 -2.58 4.73 -24.90 -0.12 -2.70 16 17 C 0.22 4.63 0.69 -89.64 -0.06 4.56 16 18 O -0.57 -12.05 10.61 -35.23 -0.37 -12.42 16 19 C -0.55 -14.11 8.87 -34.44 -0.31 -14.41 16 20 H 0.08 2.21 8.03 -52.49 -0.42 1.79 16 21 C 0.09 2.44 5.47 -17.82 -0.10 2.35 16 22 N -0.88 -25.48 13.96 55.43 0.77 -24.71 16 23 Si 0.87 20.62 23.95 -169.99 -4.07 16.55 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.23 -5.29 5.49 56.52 0.31 -4.98 16 27 C 0.09 1.72 6.08 -2.54 -0.02 1.71 16 28 N -0.47 -4.86 11.55 -9.86 -0.11 -4.98 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.42 4.18 7.92 -40.82 -0.32 3.86 16 36 H 0.07 1.27 7.58 -51.93 -0.39 0.88 16 37 H 0.07 1.12 7.69 -51.93 -0.40 0.72 16 38 H 0.09 1.76 8.03 -51.93 -0.42 1.35 16 39 H 0.08 1.55 5.00 -51.93 -0.26 1.29 16 40 H 0.37 6.72 9.11 45.56 0.41 7.13 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 43 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -31.87 361.76 -4.89 -36.76 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -4.79 Total: 9.43 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: -1.66 Total: 11.74 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.19 Total: -51.81 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: 0.00 Total: -28.13 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.07 Total: 16.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.87 -4.89 -36.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118152976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.579 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds