Wall clock time and date at job start Tue Mar 31 2020 22:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29945 * 126.28644 * 2 1 4 4 O 1.21302 * 110.25421 * 179.97438 * 3 2 1 5 5 C 1.33654 * 109.80890 * 0.02562 * 4 3 2 6 6 C 1.50691 * 126.55189 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47489 * 195.02298 * 6 5 4 8 8 C 1.53001 * 109.47229 * 75.01998 * 6 5 4 9 9 N 1.46508 * 109.47126 * 315.02280 * 6 5 4 10 10 C 1.34774 * 120.00161 * 204.99774 * 9 6 5 11 11 O 1.21353 * 120.00124 * 0.02562 * 10 9 6 12 12 C 1.49450 * 120.00149 * 179.97438 * 10 9 6 13 13 O 1.21349 * 120.00143 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99780 * 180.02562 * 12 10 9 15 15 C 1.47016 * 125.65327 * 359.95847 * 14 12 10 16 16 C 1.54320 * 107.27403 * 181.09221 * 15 14 12 17 17 C 1.55158 * 102.94128 * 22.19567 * 16 15 14 18 18 O 1.42903 * 111.00510 * 82.57155 * 17 16 15 19 19 C 1.50697 * 111.03748 * 206.40572 * 17 16 15 20 20 H 1.08001 * 120.00221 * 117.68052 * 19 17 16 21 21 C 1.37875 * 120.00399 * 297.68120 * 19 17 16 22 22 N 1.31515 * 120.00351 * 184.89487 * 21 19 17 23 23 Si 1.86808 * 119.99660 * 4.89357 * 21 19 17 24 24 H 1.48501 * 109.47151 * 84.75876 * 23 21 19 25 25 H 1.48501 * 109.46747 * 204.75910 * 23 21 19 26 26 H 1.48499 * 109.47163 * 324.75722 * 23 21 19 27 27 C 1.47431 * 125.64496 * 180.02562 * 14 12 10 28 28 N 1.31131 * 106.89650 * 0.22422 * 5 4 3 29 29 H 1.08994 * 109.47340 * 89.97860 * 1 2 3 30 30 H 1.09005 * 109.47142 * 209.97340 * 1 2 3 31 31 H 1.09001 * 109.47107 * 329.97091 * 1 2 3 32 32 H 1.08995 * 109.47606 * 299.99981 * 8 6 5 33 33 H 1.09002 * 109.46550 * 60.00747 * 8 6 5 34 34 H 1.09001 * 109.47231 * 179.97438 * 8 6 5 35 35 H 0.97001 * 119.99844 * 25.00440 * 9 6 5 36 36 H 1.09000 * 109.88684 * 300.51334 * 15 14 12 37 37 H 1.09001 * 109.88149 * 61.67644 * 15 14 12 38 38 H 1.09003 * 110.72714 * 263.83263 * 16 15 14 39 39 H 1.09003 * 110.72155 * 140.55580 * 16 15 14 40 40 H 0.96698 * 114.00062 * 186.35118 * 18 17 16 41 41 H 0.96998 * 119.99767 * 179.97438 * 22 21 19 42 42 H 1.08996 * 110.36542 * 36.99320 * 27 14 12 43 43 H 1.09001 * 110.36629 * 274.67241 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7124 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7969 -1.4370 0.0003 7 1 4.5652 -2.4682 -0.2663 8 6 5.4275 -1.3997 1.3938 9 7 5.7365 -0.8796 -0.9760 10 6 6.6835 -1.6660 -1.5248 11 8 6.7577 -2.8359 -1.2107 12 6 7.6416 -1.0976 -2.5210 13 8 7.5672 0.0720 -2.8355 14 7 8.5882 -1.8842 -3.0702 15 6 8.7908 -3.3112 -2.7802 16 6 9.9995 -3.7816 -3.6163 17 6 10.7613 -2.4600 -3.9000 18 8 11.5957 -2.1027 -2.7963 19 6 11.5653 -2.5610 -5.1706 20 1 11.3446 -1.9087 -6.0026 21 6 12.5826 -3.4862 -5.2710 22 7 13.3464 -3.5102 -6.3414 23 14 12.8761 -4.7057 -3.8866 24 1 11.9794 -5.8766 -4.0600 25 1 14.2906 -5.1567 -3.9160 26 1 12.5916 -4.0530 -2.5835 27 6 9.5931 -1.4557 -4.0602 28 7 2.3030 -1.0841 -0.0052 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5143 32 1 5.6594 -0.3686 1.6603 33 1 4.7285 -1.8145 2.1200 34 1 6.3438 -1.9902 1.3938 35 1 5.6771 0.0554 -1.2272 36 1 8.9983 -3.4481 -1.7190 37 1 7.9025 -3.8765 -3.0622 38 1 9.6688 -4.2434 -4.5467 39 1 10.6210 -4.4694 -3.0428 40 1 12.0166 -1.2367 -2.8856 41 1 14.0623 -4.1608 -6.4118 42 1 9.9313 -0.4425 -3.8433 43 1 9.1808 -1.5114 -5.0677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118152976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:16 Heat of formation + Delta-G solvation = -54.104823 kcal Electronic energy + Delta-G solvation = -29431.587306 eV Core-core repulsion = 25094.216927 eV Total energy + Delta-G solvation = -4337.370379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.82552 -41.99554 -40.35503 -39.05364 -37.59742 -37.16063 -36.14432 -34.49664 -33.95782 -32.10768 -31.68061 -30.14237 -30.08783 -27.91049 -26.40918 -25.21208 -24.53569 -23.62633 -21.99649 -21.64129 -21.23744 -19.64092 -19.36778 -19.06187 -18.51962 -18.08613 -17.39538 -17.06226 -16.97119 -16.51398 -16.39834 -15.91499 -15.44319 -15.18055 -15.03654 -14.88092 -14.70439 -14.53825 -14.28677 -14.17767 -13.93457 -13.85920 -13.42281 -13.34191 -13.24555 -13.13144 -12.84666 -12.73602 -12.64361 -12.51663 -12.34337 -12.23675 -12.19363 -11.87386 -11.17709 -10.95799 -10.79931 -10.72631 -10.67340 -10.39414 -9.74791 -8.34603 -6.49644 -0.16882 0.23420 0.89223 1.14602 1.40310 1.45210 1.48559 1.69616 2.02748 2.17958 2.41505 2.59000 2.92575 3.01253 3.14216 3.54031 3.62263 3.77826 3.78457 3.98497 4.01658 4.21440 4.34348 4.39323 4.48919 4.55020 4.55592 4.65381 4.69697 4.75373 4.78823 4.90432 4.94602 4.98216 5.04716 5.09732 5.13274 5.37967 5.51553 5.78145 6.07950 6.22319 6.45374 6.61534 6.78470 6.93930 7.13743 7.31827 8.79004 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031121 B = 0.002326 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.490503 B =12034.818543 C =12331.220149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.166 3.834 3 N -0.401 5.401 4 O 0.077 5.923 5 C 0.179 3.821 6 C 0.248 3.752 7 H 0.141 0.859 8 C -0.161 4.161 9 N -0.694 5.694 10 C 0.531 3.469 11 O -0.512 6.512 12 C 0.513 3.487 13 O -0.550 6.550 14 N -0.578 5.578 15 C 0.120 3.880 16 C -0.134 4.134 17 C 0.215 3.785 18 O -0.573 6.573 19 C -0.547 4.547 20 H 0.045 0.955 21 C 0.040 3.960 22 N -0.933 5.933 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.309 1.309 26 H -0.218 1.218 27 C 0.098 3.902 28 N -0.482 5.482 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.422 0.578 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.376 0.624 41 H 0.268 0.732 42 H 0.076 0.924 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.694 3.618 16.899 28.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 N -0.110 5.110 4 O 0.021 5.979 5 C -0.043 4.043 6 C 0.142 3.858 7 H 0.158 0.842 8 C -0.220 4.220 9 N -0.350 5.350 10 C 0.311 3.689 11 O -0.386 6.386 12 C 0.296 3.704 13 O -0.430 6.430 14 N -0.310 5.310 15 C -0.002 4.002 16 C -0.172 4.172 17 C 0.174 3.826 18 O -0.380 6.380 19 C -0.585 4.585 20 H 0.063 0.937 21 C -0.161 4.161 22 N -0.571 5.571 23 Si 0.759 3.241 24 H -0.193 1.193 25 H -0.238 1.238 26 H -0.141 1.141 27 C -0.024 4.024 28 N -0.217 5.217 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.260 0.740 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.225 0.775 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.468 3.286 17.126 29.237 hybrid contribution 1.006 0.520 -0.606 1.285 sum -22.461 3.806 16.520 28.141 Atomic orbital electron populations 1.20406 0.80019 1.06136 1.05692 1.26726 1.02286 0.82583 0.98996 1.74675 0.89515 1.24536 1.22286 1.85289 1.22577 1.24545 1.65509 1.28852 0.96934 0.82322 0.96147 1.19549 0.78801 0.95650 0.91827 0.84198 1.22270 1.02698 1.04790 0.92196 1.45643 1.31213 1.15153 1.43029 1.19660 0.81751 0.85991 0.81484 1.90784 1.70896 1.16023 1.60914 1.19871 0.82081 0.85619 0.82794 1.90747 1.72550 1.16608 1.63058 1.48412 1.29725 1.12173 1.40673 1.22189 0.98354 0.79191 1.00438 1.23042 0.95846 0.97657 1.00608 1.19986 0.86599 0.91098 0.84914 1.86457 1.65532 1.40738 1.45322 1.21303 1.17131 1.20602 0.99486 0.93682 1.25698 0.94308 0.98640 0.97461 1.70051 1.19617 1.36851 1.30624 0.86164 0.75800 0.79131 0.83042 1.19279 1.23752 1.14079 1.22955 0.88599 0.99599 0.91249 1.71920 0.99623 1.30000 1.20115 0.87923 0.87488 0.88063 0.90323 0.88676 0.89630 0.74036 0.90002 0.89217 0.89252 0.90641 0.77547 0.92321 0.90584 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.51 71.23 0.75 0.18 16 2 C 0.17 2.94 8.22 138.46 1.14 4.07 16 3 N -0.40 -8.24 12.16 -60.29 -0.73 -8.98 16 4 O 0.08 1.49 11.13 74.74 0.83 2.32 16 5 C 0.18 3.12 7.26 88.38 0.64 3.76 16 6 C 0.25 3.77 3.12 44.24 0.14 3.91 16 7 H 0.14 2.17 7.58 -2.39 -0.02 2.15 16 8 C -0.16 -1.86 9.47 71.98 0.68 -1.17 16 9 N -0.69 -13.13 5.06 -447.43 -2.27 -15.40 16 10 C 0.53 13.22 7.82 87.27 0.68 13.90 16 11 O -0.51 -13.61 13.79 -3.26 -0.04 -13.65 16 12 C 0.51 15.97 7.91 87.27 0.69 16.66 16 13 O -0.55 -19.06 16.73 -3.24 -0.05 -19.11 16 14 N -0.58 -19.38 3.33 -813.43 -2.71 -22.08 16 15 C 0.12 3.81 5.49 86.73 0.48 4.29 16 16 C -0.13 -5.02 4.73 31.78 0.15 -4.87 16 17 C 0.21 9.00 0.69 -10.16 -0.01 8.99 16 18 O -0.57 -23.31 10.61 -148.98 -1.58 -24.89 16 19 C -0.55 -28.38 8.87 25.60 0.23 -28.15 16 20 H 0.04 2.59 8.03 -2.91 -0.02 2.57 16 21 C 0.04 2.16 5.47 84.65 0.46 2.62 16 22 N -0.93 -55.16 13.96 21.45 0.30 -54.86 16 23 Si 0.93 42.33 23.95 68.60 1.64 43.97 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.31 -14.46 7.11 99.48 0.71 -13.76 16 26 H -0.22 -9.45 5.49 99.48 0.55 -8.90 16 27 C 0.10 3.70 6.08 86.85 0.53 4.23 16 28 N -0.48 -9.18 11.55 -303.17 -3.50 -12.68 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.42 7.68 7.92 -92.71 -0.73 6.95 16 36 H 0.08 2.53 7.58 -2.39 -0.02 2.51 16 37 H 0.09 2.55 7.69 -2.39 -0.02 2.53 16 38 H 0.09 3.35 8.03 -2.39 -0.02 3.33 16 39 H 0.08 2.86 5.00 -2.39 -0.01 2.84 16 40 H 0.38 13.41 9.11 -74.06 -0.67 12.73 16 41 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 42 H 0.08 2.84 8.04 -2.39 -0.02 2.82 16 43 H 0.07 2.90 8.03 -2.39 -0.02 2.88 16 Total: -1.00 -68.10 361.76 -2.04 -70.14 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.48 Total: 26.80 kcal Atomic # 6 Polarization: 21.86 SS G_CDS: 6.56 Total: 28.41 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -8.91 Total: -114.00 kcal Atomic # 8 Polarization: -54.48 SS G_CDS: -0.85 Total: -55.33 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.64 Total: 43.97 kcal Total: -68.10 -2.04 -70.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118152976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.036 kcal (2) G-P(sol) polarization free energy of solvation -68.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds