Wall clock time and date at job start Tue Mar 31 2020 20:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00356 * 2 1 4 4 H 1.48506 * 109.47175 * 269.99895 * 3 2 1 5 5 H 1.48503 * 109.46992 * 29.99326 * 3 2 1 6 6 H 1.48504 * 109.47851 * 149.99727 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.47132 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21344 * 119.99818 * 359.97438 * 12 11 10 14 14 C 1.49450 * 119.99981 * 179.97438 * 12 11 10 15 15 O 1.21359 * 119.99783 * 359.97438 * 14 12 11 16 16 N 1.34770 * 119.99799 * 179.97438 * 14 12 11 17 17 C 1.46507 * 119.99912 * 180.02562 * 16 14 12 18 18 C 1.52992 * 109.47485 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47319 * 180.02562 * 19 18 17 21 21 C 1.35897 * 117.00481 * 180.02562 * 20 19 18 22 22 C 1.38774 * 120.03441 * 359.72088 * 21 20 19 23 23 C 1.38138 * 119.99122 * 179.74971 * 22 21 20 24 24 C 1.38257 * 120.07872 * 0.53010 * 23 22 21 25 25 C 1.38476 * 120.08328 * 359.74048 * 24 23 22 26 26 F 1.35105 * 119.99874 * 179.97438 * 25 24 23 27 27 C 1.38392 * 120.00736 * 359.97438 * 25 24 23 28 28 H 0.96996 * 120.00124 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 30 30 H 1.09001 * 109.47438 * 300.00155 * 9 7 2 31 31 H 1.08992 * 109.47290 * 59.99847 * 10 9 7 32 32 H 1.09001 * 109.46630 * 300.00091 * 10 9 7 33 33 H 0.97006 * 119.99859 * 359.97438 * 11 10 9 34 34 H 0.96992 * 120.00518 * 359.97438 * 16 14 12 35 35 H 1.09002 * 109.47280 * 59.99618 * 17 16 14 36 36 H 1.09001 * 109.46702 * 299.99811 * 17 16 14 37 37 H 1.09002 * 109.47103 * 59.99596 * 18 17 16 38 38 H 1.08998 * 109.46862 * 300.00408 * 18 17 16 39 39 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 40 40 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 41 41 H 1.07996 * 120.00577 * 0.02562 * 22 21 20 42 42 H 1.07993 * 119.96226 * 180.27412 * 23 22 21 43 43 H 1.07999 * 119.95967 * 179.77480 * 24 23 22 44 44 H 1.07997 * 120.03638 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0010 11 7 5.4865 -2.6367 0.0022 12 6 6.1604 -3.8039 0.0028 13 8 5.5536 -4.8547 0.0029 14 6 7.6549 -3.8039 0.0034 15 8 8.2617 -2.7529 0.0029 16 7 8.3287 -4.9711 0.0046 17 6 9.7937 -4.9712 0.0058 18 6 10.3038 -6.4136 0.0076 19 6 11.8337 -6.4136 0.0082 20 8 12.3100 -7.7609 0.0093 21 6 13.6573 -7.9391 0.0105 22 6 14.5034 -6.8391 0.0047 23 6 15.8727 -7.0213 0.0111 24 6 16.4019 -8.2985 0.0122 25 6 15.5605 -9.3984 0.0123 26 9 16.0795 -10.6458 0.0129 27 6 14.1882 -9.2200 0.0118 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6801 0.8912 30 1 3.8753 -0.6804 -0.8888 31 1 3.6586 -3.1503 -0.8892 32 1 3.6578 -3.1506 0.8907 33 1 5.9715 -1.7966 0.0025 34 1 7.8437 -5.8111 0.0054 35 1 10.1564 -4.4568 0.8958 36 1 10.1578 -4.4578 -0.8842 37 1 9.9411 -6.9283 -0.8822 38 1 9.9396 -6.9265 0.8977 39 1 12.1967 -5.8988 0.8977 40 1 12.1974 -5.9008 -0.8823 41 1 14.0914 -5.8409 -0.0003 42 1 16.5307 -6.1649 0.0111 43 1 17.4727 -8.4387 0.0136 44 1 13.5316 -10.0775 0.0123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119962340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:07 Heat of formation + Delta-G solvation = -139.008295 kcal Electronic energy + Delta-G solvation = -26437.113400 eV Core-core repulsion = 22076.141369 eV Total energy + Delta-G solvation = -4360.972032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.44183 -40.76068 -40.52529 -38.54024 -37.97190 -36.13552 -35.15438 -32.92947 -32.64264 -31.28854 -30.33453 -30.24142 -27.22422 -25.57697 -23.84832 -23.41418 -22.56712 -21.99953 -20.92606 -20.26075 -19.19582 -18.32327 -17.28393 -17.09557 -17.06465 -16.84326 -16.57781 -16.49611 -16.19581 -15.94877 -15.54475 -15.06208 -14.92083 -14.74597 -14.34362 -14.20952 -14.15741 -13.65784 -13.31976 -13.25302 -12.86379 -12.82190 -12.64750 -12.63768 -12.12734 -12.04452 -11.68844 -11.55440 -11.51219 -11.29041 -11.27457 -10.47273 -10.34193 -9.98603 -9.55358 -9.53136 -9.48425 -9.35122 -8.91124 -8.82060 -8.63735 -6.14557 -4.15481 0.52967 0.68905 1.45863 2.12693 2.58903 2.99038 3.24551 3.28084 3.32767 3.34202 3.68707 3.79136 4.09258 4.21698 4.30726 4.34426 4.35607 4.37011 4.45765 4.59403 4.65662 4.78298 4.78555 4.81187 5.04966 5.18597 5.34987 5.40509 5.46920 5.48770 5.60908 5.72171 5.90793 5.93048 6.06948 6.10735 6.43241 6.46603 6.71187 6.84440 7.04315 7.15393 7.47972 7.59863 7.76672 8.14950 8.39351 8.88680 9.45346 10.98235 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.043163 B = 0.001274 C = 0.001240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.544292 B =21972.110773 C =22584.300977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.127 3.873 11 N -0.690 5.690 12 C 0.499 3.501 13 O -0.528 6.528 14 C 0.510 3.490 15 O -0.520 6.520 16 N -0.705 5.705 17 C 0.122 3.878 18 C -0.134 4.134 19 C 0.063 3.937 20 O -0.309 6.309 21 C 0.163 3.837 22 C -0.220 4.220 23 C -0.049 4.049 24 C -0.194 4.194 25 C 0.139 3.861 26 F -0.134 7.134 27 C -0.192 4.192 28 H 0.265 0.735 29 H 0.025 0.975 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.409 0.591 34 H 0.415 0.585 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.208 -15.603 0.046 37.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.564 4.564 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.005 3.995 11 N -0.341 5.341 12 C 0.278 3.722 13 O -0.405 6.405 14 C 0.291 3.709 15 O -0.395 6.395 16 N -0.360 5.360 17 C -0.002 4.002 18 C -0.172 4.172 19 C -0.013 4.013 20 O -0.222 6.222 21 C 0.117 3.883 22 C -0.239 4.239 23 C -0.067 4.067 24 C -0.213 4.213 25 C 0.119 3.881 26 F -0.112 7.112 27 C -0.211 4.211 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.244 0.756 34 H 0.252 0.748 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 33.868 -15.643 0.048 37.306 hybrid contribution 0.526 0.886 -0.019 1.030 sum 34.393 -14.757 0.029 37.426 Atomic orbital electron populations 1.69895 1.06300 1.27148 1.50170 1.24977 0.94752 0.99152 0.94221 0.86771 0.80330 0.83507 0.78617 1.20154 1.21204 1.18974 1.20876 0.88427 0.94976 1.52074 0.90525 1.19827 0.98124 0.90945 0.97239 1.21731 0.74634 1.00888 1.02228 1.46214 1.09564 1.07996 1.70330 1.19909 0.87568 0.85294 0.79434 1.90754 1.69601 1.30994 1.49198 1.20443 0.89107 0.84110 0.77252 1.90762 1.70088 1.31039 1.47651 1.45646 1.06945 1.09376 1.74028 1.21218 0.79587 0.95953 1.03426 1.21701 0.93264 0.96923 1.05291 1.22715 0.94669 0.81456 1.02437 1.86051 1.18466 1.29643 1.88027 1.18578 0.82661 0.93103 0.94000 1.21391 0.94353 0.98614 1.09516 1.20826 0.94466 0.96651 0.94792 1.21093 1.00552 0.91714 1.07897 1.17302 0.90988 0.79639 1.00127 1.91532 1.87043 1.39056 1.93599 1.20280 0.93687 0.96813 1.10320 0.92479 0.95710 0.96153 0.91202 0.91188 0.75552 0.74820 0.90520 0.90510 0.89494 0.89489 0.91067 0.91074 0.84545 0.84504 0.84505 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 7 C -0.53 -14.40 9.66 -34.44 -0.33 -14.73 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.02 -0.53 4.16 -27.88 -0.12 -0.64 16 10 C 0.13 2.47 5.61 -4.04 -0.02 2.45 16 11 N -0.69 -11.41 5.55 -60.73 -0.34 -11.75 16 12 C 0.50 7.82 7.89 -11.58 -0.09 7.73 16 13 O -0.53 -9.31 16.48 5.50 0.09 -9.22 16 14 C 0.51 6.72 7.89 -11.59 -0.09 6.62 16 15 O -0.52 -7.79 16.48 5.49 0.09 -7.70 16 16 N -0.71 -6.67 5.55 -60.73 -0.34 -7.01 16 17 C 0.12 0.81 5.67 -4.04 -0.02 0.78 16 18 C -0.13 -0.64 5.70 -26.74 -0.15 -0.79 16 19 C 0.06 0.29 4.74 37.16 0.18 0.46 16 20 O -0.31 -2.16 10.14 -19.42 -0.20 -2.36 16 21 C 0.16 1.13 6.68 -39.23 -0.26 0.87 16 22 C -0.22 -1.18 9.04 -39.42 -0.36 -1.54 16 23 C -0.05 -0.23 10.04 -39.61 -0.40 -0.63 16 24 C -0.19 -1.09 10.02 -39.49 -0.40 -1.48 16 25 C 0.14 1.00 7.30 -39.44 -0.29 0.71 16 26 F -0.13 -1.08 17.27 2.25 0.04 -1.04 16 27 C -0.19 -1.39 9.97 -39.37 -0.39 -1.78 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 30 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.41 6.25 7.95 -40.82 -0.32 5.92 16 34 H 0.42 3.51 7.94 -40.82 -0.32 3.18 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.25 7.67 -51.93 -0.40 -0.15 16 40 H 0.07 0.25 7.65 -51.93 -0.40 -0.15 16 41 H 0.14 0.48 6.30 -52.49 -0.33 0.15 16 42 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 43 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -33.04 385.08 -7.52 -40.56 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.93 Total: 2.74 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.84 Total: -0.07 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.10 Total: -44.93 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.02 Total: -19.28 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.04 -7.52 -40.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119962340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.448 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds