Wall clock time and date at job start Tue Mar 31 2020 20:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00356 * 2 1 4 4 H 1.48506 * 109.47175 * 269.99895 * 3 2 1 5 5 H 1.48503 * 109.46992 * 29.99326 * 3 2 1 6 6 H 1.48504 * 109.47851 * 149.99727 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.47132 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21344 * 119.99818 * 359.97438 * 12 11 10 14 14 C 1.49450 * 119.99981 * 179.97438 * 12 11 10 15 15 O 1.21359 * 119.99783 * 359.97438 * 14 12 11 16 16 N 1.34770 * 119.99799 * 179.97438 * 14 12 11 17 17 C 1.46507 * 119.99912 * 180.02562 * 16 14 12 18 18 C 1.52992 * 109.47485 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47319 * 180.02562 * 19 18 17 21 21 C 1.35897 * 117.00481 * 180.02562 * 20 19 18 22 22 C 1.38774 * 120.03441 * 359.72088 * 21 20 19 23 23 C 1.38138 * 119.99122 * 179.74971 * 22 21 20 24 24 C 1.38257 * 120.07872 * 0.53010 * 23 22 21 25 25 C 1.38476 * 120.08328 * 359.74048 * 24 23 22 26 26 F 1.35105 * 119.99874 * 179.97438 * 25 24 23 27 27 C 1.38392 * 120.00736 * 359.97438 * 25 24 23 28 28 H 0.96996 * 120.00124 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 30 30 H 1.09001 * 109.47438 * 300.00155 * 9 7 2 31 31 H 1.08992 * 109.47290 * 59.99847 * 10 9 7 32 32 H 1.09001 * 109.46630 * 300.00091 * 10 9 7 33 33 H 0.97006 * 119.99859 * 359.97438 * 11 10 9 34 34 H 0.96992 * 120.00518 * 359.97438 * 16 14 12 35 35 H 1.09002 * 109.47280 * 59.99618 * 17 16 14 36 36 H 1.09001 * 109.46702 * 299.99811 * 17 16 14 37 37 H 1.09002 * 109.47103 * 59.99596 * 18 17 16 38 38 H 1.08998 * 109.46862 * 300.00408 * 18 17 16 39 39 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 40 40 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 41 41 H 1.07996 * 120.00577 * 0.02562 * 22 21 20 42 42 H 1.07993 * 119.96226 * 180.27412 * 23 22 21 43 43 H 1.07999 * 119.95967 * 179.77480 * 24 23 22 44 44 H 1.07997 * 120.03638 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0010 11 7 5.4865 -2.6367 0.0022 12 6 6.1604 -3.8039 0.0028 13 8 5.5536 -4.8547 0.0029 14 6 7.6549 -3.8039 0.0034 15 8 8.2617 -2.7529 0.0029 16 7 8.3287 -4.9711 0.0046 17 6 9.7937 -4.9712 0.0058 18 6 10.3038 -6.4136 0.0076 19 6 11.8337 -6.4136 0.0082 20 8 12.3100 -7.7609 0.0093 21 6 13.6573 -7.9391 0.0105 22 6 14.5034 -6.8391 0.0047 23 6 15.8727 -7.0213 0.0111 24 6 16.4019 -8.2985 0.0122 25 6 15.5605 -9.3984 0.0123 26 9 16.0795 -10.6458 0.0129 27 6 14.1882 -9.2200 0.0118 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6801 0.8912 30 1 3.8753 -0.6804 -0.8888 31 1 3.6586 -3.1503 -0.8892 32 1 3.6578 -3.1506 0.8907 33 1 5.9715 -1.7966 0.0025 34 1 7.8437 -5.8111 0.0054 35 1 10.1564 -4.4568 0.8958 36 1 10.1578 -4.4578 -0.8842 37 1 9.9411 -6.9283 -0.8822 38 1 9.9396 -6.9265 0.8977 39 1 12.1967 -5.8988 0.8977 40 1 12.1974 -5.9008 -0.8823 41 1 14.0914 -5.8409 -0.0003 42 1 16.5307 -6.1649 0.0111 43 1 17.4727 -8.4387 0.0136 44 1 13.5316 -10.0775 0.0123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119962340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:06 Heat of formation + Delta-G solvation = -162.577586 kcal Electronic energy + Delta-G solvation = -26438.135442 eV Core-core repulsion = 22076.141369 eV Total energy + Delta-G solvation = -4361.994073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.98787 -41.70968 -41.12816 -39.69089 -38.43105 -37.11862 -36.46146 -34.81407 -33.31807 -32.12106 -31.73910 -30.69102 -28.15713 -26.92411 -24.79556 -23.99678 -23.27645 -22.63253 -22.46033 -21.37777 -19.72343 -19.40985 -19.01644 -17.97315 -17.57632 -17.56371 -17.21092 -17.09481 -17.01763 -16.63438 -16.55259 -16.19760 -16.05893 -16.04022 -15.35508 -15.22593 -14.90987 -14.72855 -14.56965 -14.47390 -13.79242 -13.45472 -13.38927 -13.27199 -13.06484 -13.05382 -12.85037 -12.52740 -12.52398 -12.22165 -12.19129 -11.93283 -11.77782 -11.64457 -11.50847 -10.78723 -10.73870 -10.36413 -10.22738 -9.93512 -9.34048 -8.29927 -6.36912 0.08772 0.26334 0.31686 1.24834 1.40219 1.41846 1.52978 1.98245 2.11798 2.36847 2.56749 2.68364 3.05595 3.32402 3.42651 3.71795 3.85994 3.87319 3.95320 3.98816 4.10848 4.26864 4.27642 4.38177 4.39491 4.39542 4.43118 4.58440 4.72893 4.97533 4.98920 4.99571 5.00819 5.07233 5.15594 5.20816 5.30253 5.32978 5.37693 5.59134 5.69541 5.89979 6.20788 6.30528 6.34778 6.67997 6.73905 6.92762 7.27990 8.86452 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.043163 B = 0.001274 C = 0.001240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.544292 B =21972.110773 C =22584.300977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.537 4.537 8 H 0.035 0.965 9 C -0.017 4.017 10 C 0.141 3.859 11 N -0.688 5.688 12 C 0.499 3.501 13 O -0.550 6.550 14 C 0.518 3.482 15 O -0.538 6.538 16 N -0.689 5.689 17 C 0.121 3.879 18 C -0.125 4.125 19 C 0.059 3.941 20 O -0.325 6.325 21 C 0.149 3.851 22 C -0.219 4.219 23 C -0.047 4.047 24 C -0.196 4.196 25 C 0.118 3.882 26 F -0.145 7.145 27 C -0.209 4.209 28 H 0.268 0.732 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.418 0.582 34 H 0.421 0.579 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.153 0.847 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.389 -14.058 0.048 39.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.163 1.163 7 C -0.576 4.576 8 H 0.054 0.946 9 C -0.055 4.055 10 C 0.018 3.982 11 N -0.340 5.340 12 C 0.280 3.720 13 O -0.429 6.429 14 C 0.298 3.702 15 O -0.415 6.415 16 N -0.342 5.342 17 C -0.002 4.002 18 C -0.162 4.162 19 C -0.016 4.016 20 O -0.239 6.239 21 C 0.103 3.897 22 C -0.237 4.237 23 C -0.065 4.065 24 C -0.215 4.215 25 C 0.099 3.901 26 F -0.124 7.124 27 C -0.229 4.229 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.255 0.745 34 H 0.258 0.742 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.176 0.824 42 H 0.184 0.816 43 H 0.171 0.829 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 37.098 -14.143 0.050 39.702 hybrid contribution -0.485 0.277 -0.021 0.558 sum 36.613 -13.866 0.029 39.151 Atomic orbital electron populations 1.70057 1.08450 1.28391 1.51928 1.25983 0.95593 1.03572 0.93717 0.85626 0.79660 0.77856 0.79300 1.19090 1.21202 1.16330 1.21217 0.91267 0.93573 1.51532 0.94628 1.19694 0.94701 0.92914 0.98177 1.21278 0.76640 0.98934 1.01305 1.45979 1.08193 1.08987 1.70812 1.20394 0.88979 0.84447 0.78228 1.90745 1.70509 1.31697 1.49918 1.19832 0.87547 0.84911 0.77952 1.90763 1.69794 1.31737 1.49228 1.45674 1.08305 1.08424 1.71843 1.21409 0.77396 0.97248 1.04103 1.21581 0.93646 0.95634 1.05377 1.22847 0.94227 0.80744 1.03820 1.86013 1.18643 1.31044 1.88217 1.18712 0.82916 0.93390 0.94645 1.21697 0.94547 0.99073 1.08398 1.21209 0.94701 0.97126 0.93423 1.21375 1.01285 0.91658 1.07138 1.17551 0.91343 0.79767 1.01450 1.91496 1.87157 1.39853 1.93861 1.20381 0.93932 0.97305 1.11266 0.92319 0.94574 0.94710 0.92251 0.92272 0.74512 0.74170 0.89814 0.89801 0.89469 0.89465 0.89682 0.89686 0.82397 0.81558 0.82943 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.30 13.96 21.45 0.30 -58.00 16 2 C 0.01 0.50 5.47 84.65 0.46 0.97 16 3 Si 0.95 42.16 27.47 68.60 1.88 44.04 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 7 C -0.54 -29.95 9.66 25.60 0.25 -29.70 16 8 H 0.04 2.20 7.99 -2.91 -0.02 2.18 16 9 C -0.02 -0.74 4.16 29.85 0.12 -0.62 16 10 C 0.14 5.47 5.61 86.38 0.48 5.95 16 11 N -0.69 -21.79 5.55 -464.41 -2.58 -24.37 16 12 C 0.50 15.01 7.89 87.27 0.69 15.70 16 13 O -0.55 -19.00 16.48 -3.23 -0.05 -19.06 16 14 C 0.52 12.58 7.89 87.27 0.69 13.27 16 15 O -0.54 -14.83 16.48 -3.27 -0.05 -14.88 16 16 N -0.69 -11.49 5.55 -464.40 -2.58 -14.07 16 17 C 0.12 1.26 5.67 86.38 0.49 1.75 16 18 C -0.12 -0.90 5.70 30.59 0.17 -0.73 16 19 C 0.06 0.39 4.74 71.98 0.34 0.73 16 20 O -0.33 -4.14 10.14 -92.39 -0.94 -5.08 16 21 C 0.15 1.92 6.68 22.50 0.15 2.07 16 22 C -0.22 -1.83 9.04 22.37 0.20 -1.63 16 23 C -0.05 -0.32 10.04 22.25 0.22 -0.10 16 24 C -0.20 -1.93 10.02 22.33 0.22 -1.70 16 25 C 0.12 1.69 7.30 22.36 0.16 1.86 16 26 F -0.15 -2.41 17.27 44.97 0.78 -1.64 16 27 C -0.21 -3.08 9.97 22.41 0.22 -2.86 16 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.04 1.51 7.20 -2.39 -0.02 1.49 16 30 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 31 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.42 11.85 7.95 -92.70 -0.74 11.11 16 34 H 0.42 6.29 7.94 -92.71 -0.74 5.55 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.09 0.33 7.67 -2.39 -0.02 0.31 16 40 H 0.08 0.33 7.65 -2.39 -0.02 0.31 16 41 H 0.16 0.55 6.30 -2.91 -0.02 0.53 16 42 H 0.17 0.12 8.06 -2.91 -0.02 0.09 16 43 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -72.60 385.08 1.17 -71.43 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -0.48 Total: 16.66 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 4.89 Total: 4.95 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -4.85 Total: -96.44 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -1.04 Total: -39.02 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.78 Total: -1.64 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.04 kcal Total: -72.60 1.17 -71.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119962340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.147 kcal (2) G-P(sol) polarization free energy of solvation -72.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds