Wall clock time and date at job start Tue Mar 31 2020 20:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 120.00405 * 2 1 4 4 H 1.48499 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46768 * 299.99985 * 3 2 1 6 6 H 1.48500 * 109.46950 * 59.99370 * 3 2 1 7 7 C 1.38956 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99571 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00027 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99738 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00084 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47284 * 179.97438 * 12 10 9 14 14 C 1.46896 * 110.99955 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47247 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47562 * 179.97438 * 15 14 13 17 17 C 1.34775 * 120.00178 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99925 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00069 * 179.97438 * 17 16 15 20 20 N 1.46499 * 109.47138 * 180.02562 * 19 17 16 21 21 C 1.34777 * 119.99665 * 180.28062 * 20 19 17 22 22 O 1.21613 * 120.00251 * 359.72091 * 21 20 19 23 23 C 1.47380 * 119.99615 * 179.72401 * 21 20 19 24 24 C 1.47025 * 127.19272 * 179.97438 * 23 21 20 25 25 C 1.34167 * 105.95478 * 180.02562 * 24 23 21 26 26 O 1.34215 * 109.12756 * 359.97438 * 25 24 23 27 27 C 1.33659 * 110.90432 * 359.72630 * 26 25 24 28 28 H 0.97003 * 119.99442 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99538 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47698 * 59.99554 * 12 10 9 31 31 H 1.09005 * 109.47178 * 299.99568 * 12 10 9 32 32 H 1.00901 * 110.99869 * 303.94980 * 13 12 10 33 33 H 1.09000 * 109.47595 * 59.99780 * 14 13 12 34 34 H 1.09006 * 109.47133 * 299.99542 * 14 13 12 35 35 H 1.09000 * 109.47116 * 59.99348 * 15 14 13 36 36 H 1.09006 * 109.46567 * 299.99750 * 15 14 13 37 37 H 0.97002 * 119.99772 * 0.02562 * 16 15 14 38 38 H 1.09009 * 109.46601 * 60.00324 * 19 17 16 39 39 H 1.08998 * 109.47035 * 300.00831 * 19 17 16 40 40 H 0.97001 * 119.99790 * 359.97438 * 20 19 17 41 41 H 1.08006 * 127.01556 * 359.97438 * 24 23 21 42 42 H 1.08008 * 125.44000 * 180.02562 * 25 24 23 43 43 H 1.07998 * 125.79979 * 180.28875 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1982 -5.9795 0.0017 14 6 1.4979 -7.2708 0.0018 15 6 2.5227 -8.4069 0.0032 16 7 1.8243 -9.6947 0.0039 17 6 2.5291 -10.8435 0.0047 18 8 3.7415 -10.8111 0.0052 19 6 1.8106 -12.1682 0.0060 20 7 2.7920 -13.2560 0.0072 21 6 2.3767 -14.5382 0.0028 22 8 1.1874 -14.7922 0.0029 23 6 3.3639 -15.6324 -0.0021 24 6 3.0897 -17.0768 -0.0068 25 6 4.2883 -17.6798 -0.0097 26 8 5.2510 -16.7446 -0.0078 27 6 4.7231 -15.5167 -0.0096 28 1 -0.4849 0.8401 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6179 -4.9209 -0.8897 31 1 0.6160 -4.9205 0.8903 32 1 2.8337 -5.9125 -0.7792 33 1 0.8733 -7.3455 -0.8884 34 1 0.8726 -7.3450 0.8916 35 1 3.1470 -8.3319 0.8936 36 1 3.1483 -8.3329 -0.8864 37 1 0.8547 -9.7205 0.0031 38 1 1.1855 -12.2433 -0.8839 39 1 1.1859 -12.2419 0.8961 40 1 3.7406 -13.0533 0.0067 41 1 2.1212 -17.5548 -0.0069 42 1 4.4523 -18.7473 -0.0137 43 1 5.2783 -14.5904 -0.0132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127961580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:04 Heat of formation + Delta-G solvation = -87.298053 kcal Electronic energy + Delta-G solvation = -26502.831152 eV Core-core repulsion = 22164.021407 eV Total energy + Delta-G solvation = -4338.809746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.03636 -40.53135 -39.38357 -38.36377 -36.49700 -34.93811 -34.51529 -33.80749 -33.36171 -31.28363 -30.78936 -29.86077 -27.97132 -25.92527 -24.15806 -23.60234 -22.23142 -21.97474 -21.01503 -20.64719 -19.35349 -19.17819 -17.95177 -17.39777 -16.92359 -16.72334 -16.50600 -16.35661 -16.00518 -15.77827 -15.70754 -15.21209 -15.00550 -14.58330 -14.25725 -14.11042 -13.92477 -13.57357 -13.49767 -13.39179 -13.22810 -13.04267 -12.88463 -12.44451 -11.99432 -11.58190 -11.52746 -11.49936 -11.07750 -10.59005 -10.44620 -10.36289 -10.33741 -10.25306 -9.72159 -9.55377 -9.46381 -9.32202 -8.55458 -8.18753 -7.99972 -6.45128 -3.85939 0.82727 1.57593 2.11637 2.24694 2.44933 2.89052 2.94113 3.14393 3.25441 3.32769 3.86010 4.01747 4.08556 4.14544 4.18731 4.36300 4.54736 4.75802 4.80491 4.83344 4.90493 5.02656 5.12097 5.15376 5.22259 5.29785 5.39058 5.66123 5.67944 5.74615 5.78271 5.81128 5.88815 5.98076 6.20419 6.42285 6.94725 6.98969 7.06272 7.49942 7.52604 7.68281 7.71505 8.02826 8.57260 9.14627 9.50233 10.01327 10.72613 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.048131 B = 0.001225 C = 0.001196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.612026 B =22852.839787 C =23401.364295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.582 6.582 12 C 0.052 3.948 13 N -0.665 5.665 14 C 0.049 3.951 15 C 0.120 3.880 16 N -0.721 5.721 17 C 0.509 3.491 18 O -0.536 6.536 19 C 0.102 3.898 20 N -0.716 5.716 21 C 0.592 3.408 22 O -0.536 6.536 23 C -0.238 4.238 24 C -0.164 4.164 25 C -0.040 4.040 26 O -0.173 6.173 27 C 0.028 3.972 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.353 0.647 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.404 0.596 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.410 0.590 41 H 0.161 0.839 42 H 0.210 0.790 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 -32.503 -0.937 32.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.082 4.082 15 C -0.004 4.004 16 N -0.373 5.373 17 C 0.294 3.706 18 O -0.413 6.413 19 C -0.026 4.026 20 N -0.372 5.372 21 C 0.380 3.620 22 O -0.414 6.414 23 C -0.243 4.243 24 C -0.184 4.184 25 C -0.106 4.106 26 O -0.068 6.068 27 C -0.043 4.043 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.172 0.828 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.239 0.761 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.248 0.752 41 H 0.178 0.822 42 H 0.227 0.773 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.683 -32.509 -0.254 32.621 hybrid contribution -0.963 1.064 -0.894 1.690 sum 1.720 -31.445 -1.147 31.513 Atomic orbital electron populations 1.69619 1.05963 1.28103 1.50586 1.25265 0.95630 0.99745 0.97237 0.85798 0.79751 0.81075 0.77722 1.19171 1.20754 1.20716 1.19768 0.93439 0.82194 1.47546 0.87817 1.41857 1.09203 1.04597 1.64250 1.19765 0.88395 0.84694 0.84703 1.90535 1.13718 1.87017 1.55387 1.21672 0.94197 0.90776 1.01374 1.59926 1.18852 0.99420 1.51671 1.22084 0.95503 0.89394 1.01184 1.21350 0.95034 0.80310 1.03704 1.45791 1.10670 1.05823 1.75010 1.20426 0.88037 0.85729 0.76361 1.90725 1.13725 1.87290 1.49574 1.21065 0.91916 0.84273 1.05312 1.45511 1.11019 1.04519 1.76109 1.17213 0.87643 0.81328 0.75864 1.90806 1.16780 1.83904 1.49875 1.21420 0.93142 0.94671 1.15017 1.22786 0.99508 0.91015 1.05078 1.24001 0.85569 0.94476 1.06530 1.83823 1.37609 1.14747 1.70578 1.24575 0.92745 0.87440 0.99542 0.91894 0.77453 0.93666 0.89421 0.82780 0.94789 0.90334 0.89880 0.91062 0.76127 0.87968 0.87906 0.75167 0.82170 0.77338 0.77003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 9 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 10 C 0.44 10.11 7.82 -10.99 -0.09 10.02 16 11 O -0.58 -15.60 15.78 5.55 0.09 -15.51 16 12 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 13 N -0.67 -9.90 6.13 -115.06 -0.70 -10.60 16 14 C 0.05 0.49 5.80 -3.83 -0.02 0.47 16 15 C 0.12 1.17 5.93 -4.04 -0.02 1.14 16 16 N -0.72 -5.23 5.56 -60.29 -0.33 -5.57 16 17 C 0.51 4.37 7.90 -10.98 -0.09 4.28 16 18 O -0.54 -6.45 15.67 5.56 0.09 -6.36 16 19 C 0.10 0.69 6.15 -5.19 -0.03 0.66 16 20 N -0.72 -5.53 5.52 -62.57 -0.35 -5.88 16 21 C 0.59 5.66 7.81 -12.54 -0.10 5.57 16 22 O -0.54 -6.85 16.98 5.27 0.09 -6.76 16 23 C -0.24 -1.89 6.31 -103.28 -0.65 -2.54 16 24 C -0.16 -1.14 11.01 -37.46 -0.41 -1.56 16 25 C -0.04 -0.20 12.03 29.30 0.35 0.15 16 26 O -0.17 -1.07 10.52 7.64 0.08 -0.99 16 27 C 0.03 0.16 11.61 30.07 0.35 0.51 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.35 5.46 8.43 -39.29 -0.33 5.12 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 1.76 8.47 -40.82 -0.35 1.42 16 38 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.41 2.80 6.41 -40.82 -0.26 2.54 16 41 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.21 0.23 8.06 -52.48 -0.42 -0.19 16 43 H 0.21 0.54 7.47 -52.49 -0.39 0.15 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -36.90 384.50 -5.98 -42.87 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -5.39 Total: 13.07 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -0.98 Total: 11.63 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.72 Total: -59.55 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: 0.34 Total: -29.62 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.90 -5.98 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127961580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.424 kcal (2) G-P(sol) polarization free energy of solvation -36.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds