Wall clock time and date at job start Tue Mar 31 2020 20:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 120.00405 * 2 1 4 4 H 1.48499 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46768 * 299.99985 * 3 2 1 6 6 H 1.48500 * 109.46950 * 59.99370 * 3 2 1 7 7 C 1.38956 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99571 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00027 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99738 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00084 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47284 * 179.97438 * 12 10 9 14 14 C 1.46896 * 110.99955 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47247 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47562 * 179.97438 * 15 14 13 17 17 C 1.34775 * 120.00178 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99925 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00069 * 179.97438 * 17 16 15 20 20 N 1.46499 * 109.47138 * 180.02562 * 19 17 16 21 21 C 1.34777 * 119.99665 * 180.28062 * 20 19 17 22 22 O 1.21613 * 120.00251 * 359.72091 * 21 20 19 23 23 C 1.47380 * 119.99615 * 179.72401 * 21 20 19 24 24 C 1.47025 * 127.19272 * 179.97438 * 23 21 20 25 25 C 1.34167 * 105.95478 * 180.02562 * 24 23 21 26 26 O 1.34215 * 109.12756 * 359.97438 * 25 24 23 27 27 C 1.33659 * 110.90432 * 359.72630 * 26 25 24 28 28 H 0.97003 * 119.99442 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99538 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47698 * 59.99554 * 12 10 9 31 31 H 1.09005 * 109.47178 * 299.99568 * 12 10 9 32 32 H 1.00901 * 110.99869 * 303.94980 * 13 12 10 33 33 H 1.09000 * 109.47595 * 59.99780 * 14 13 12 34 34 H 1.09006 * 109.47133 * 299.99542 * 14 13 12 35 35 H 1.09000 * 109.47116 * 59.99348 * 15 14 13 36 36 H 1.09006 * 109.46567 * 299.99750 * 15 14 13 37 37 H 0.97002 * 119.99772 * 0.02562 * 16 15 14 38 38 H 1.09009 * 109.46601 * 60.00324 * 19 17 16 39 39 H 1.08998 * 109.47035 * 300.00831 * 19 17 16 40 40 H 0.97001 * 119.99790 * 359.97438 * 20 19 17 41 41 H 1.08006 * 127.01556 * 359.97438 * 24 23 21 42 42 H 1.08008 * 125.44000 * 180.02562 * 25 24 23 43 43 H 1.07998 * 125.79979 * 180.28875 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1982 -5.9795 0.0017 14 6 1.4979 -7.2708 0.0018 15 6 2.5227 -8.4069 0.0032 16 7 1.8243 -9.6947 0.0039 17 6 2.5291 -10.8435 0.0047 18 8 3.7415 -10.8111 0.0052 19 6 1.8106 -12.1682 0.0060 20 7 2.7920 -13.2560 0.0072 21 6 2.3767 -14.5382 0.0028 22 8 1.1874 -14.7922 0.0029 23 6 3.3639 -15.6324 -0.0021 24 6 3.0897 -17.0768 -0.0068 25 6 4.2883 -17.6798 -0.0097 26 8 5.2510 -16.7446 -0.0078 27 6 4.7231 -15.5167 -0.0096 28 1 -0.4849 0.8401 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6179 -4.9209 -0.8897 31 1 0.6160 -4.9205 0.8903 32 1 2.8337 -5.9125 -0.7792 33 1 0.8733 -7.3455 -0.8884 34 1 0.8726 -7.3450 0.8916 35 1 3.1470 -8.3319 0.8936 36 1 3.1483 -8.3329 -0.8864 37 1 0.8547 -9.7205 0.0031 38 1 1.1855 -12.2433 -0.8839 39 1 1.1859 -12.2419 0.8961 40 1 3.7406 -13.0533 0.0067 41 1 2.1212 -17.5548 -0.0069 42 1 4.4523 -18.7473 -0.0137 43 1 5.2783 -14.5904 -0.0132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127961580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:03 Heat of formation + Delta-G solvation = -120.024171 kcal Electronic energy + Delta-G solvation = -26504.250263 eV Core-core repulsion = 22164.021407 eV Total energy + Delta-G solvation = -4340.228857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.49197 -41.24458 -40.20973 -40.05541 -37.53727 -36.02881 -35.63544 -35.25382 -33.86538 -33.26625 -31.41963 -30.67510 -28.84336 -27.37908 -25.56119 -24.37963 -23.08846 -22.42296 -21.72199 -21.24392 -21.09264 -19.92241 -19.71716 -18.15905 -17.71183 -17.59601 -17.35352 -17.14500 -16.93821 -16.81299 -16.52179 -16.36431 -15.91873 -15.87465 -15.61603 -15.30835 -14.93080 -14.80259 -14.37414 -14.16933 -14.10684 -13.84096 -13.62766 -13.50731 -13.34384 -13.29960 -12.93292 -12.58866 -12.41377 -12.38343 -12.11371 -11.51243 -11.35781 -11.21190 -10.88809 -10.38358 -10.35942 -10.17784 -10.01096 -9.75758 -9.37282 -8.46922 -5.95308 0.30764 1.11988 1.36868 1.42571 1.42672 1.56211 1.60127 2.05011 2.05761 2.25049 2.26327 2.33458 3.01063 3.20902 3.48014 3.59587 3.67670 3.76694 3.90616 4.09179 4.12730 4.29342 4.32877 4.34486 4.47935 4.51965 4.55960 4.62602 4.74895 4.89815 4.95176 4.99155 5.13957 5.26638 5.32976 5.41662 5.85073 5.97649 6.07544 6.33945 6.34524 6.39300 6.60451 7.03333 7.06346 7.13235 7.56771 8.12309 8.70591 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.048131 B = 0.001225 C = 0.001196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.612026 B =22852.839787 C =23401.364295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.068 3.932 13 N -0.686 5.686 14 C 0.056 3.944 15 C 0.128 3.872 16 N -0.706 5.706 17 C 0.513 3.487 18 O -0.573 6.573 19 C 0.105 3.895 20 N -0.711 5.711 21 C 0.591 3.409 22 O -0.577 6.577 23 C -0.270 4.270 24 C -0.194 4.194 25 C -0.025 4.025 26 O -0.179 6.179 27 C 0.042 3.958 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.346 0.654 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.421 0.579 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.415 0.585 41 H 0.158 0.842 42 H 0.247 0.753 43 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 -33.325 -1.033 33.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.512 6.512 12 C -0.064 4.064 13 N -0.319 5.319 14 C -0.073 4.073 15 C 0.004 3.996 16 N -0.359 5.359 17 C 0.299 3.701 18 O -0.453 6.453 19 C -0.022 4.022 20 N -0.365 5.365 21 C 0.381 3.619 22 O -0.458 6.458 23 C -0.275 4.275 24 C -0.214 4.214 25 C -0.090 4.090 26 O -0.073 6.073 27 C -0.028 4.028 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.165 0.835 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.259 0.741 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.254 0.746 41 H 0.176 0.824 42 H 0.263 0.737 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 2.098 -33.336 -0.347 33.403 hybrid contribution -0.761 1.250 -0.860 1.697 sum 1.337 -32.086 -1.207 32.136 Atomic orbital electron populations 1.69669 1.06773 1.29228 1.50352 1.25998 0.96511 1.02293 0.96240 0.84899 0.78057 0.77235 0.78329 1.19874 1.19571 1.19646 1.19702 0.92700 0.84122 1.49911 0.90431 1.41919 1.09361 1.04667 1.64988 1.20957 0.88284 0.86323 0.82217 1.90504 1.16010 1.87998 1.56682 1.21522 0.93753 0.87530 1.03597 1.59892 1.19325 1.00848 1.51818 1.22094 0.95349 0.86882 1.02980 1.21089 0.94916 0.81341 1.02266 1.45594 1.11504 1.04636 1.74186 1.20684 0.87558 0.86407 0.75463 1.90714 1.15398 1.87798 1.51360 1.21141 0.91635 0.82836 1.06584 1.45504 1.11492 1.04292 1.75229 1.17451 0.87393 0.81972 0.75104 1.90772 1.18342 1.84492 1.52163 1.21505 0.93907 0.94793 1.17295 1.22965 1.00425 0.91025 1.06941 1.24654 0.84531 0.95670 1.04172 1.83858 1.38003 1.15067 1.70379 1.25038 0.92133 0.88206 0.97467 0.91293 0.76863 0.90937 0.87311 0.83520 0.92422 0.88809 0.91936 0.92101 0.74087 0.86599 0.86631 0.74611 0.82389 0.73736 0.74365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 0.99 42.50 29.55 68.60 2.03 44.53 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 7 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.57 -28.64 5.29 -306.99 -1.62 -30.26 16 10 C 0.43 20.05 7.82 87.65 0.69 20.73 16 11 O -0.63 -34.24 15.78 -3.07 -0.05 -34.29 16 12 C 0.07 2.12 6.17 85.55 0.53 2.65 16 13 N -0.69 -19.41 6.13 -517.92 -3.17 -22.59 16 14 C 0.06 0.99 5.80 86.30 0.50 1.49 16 15 C 0.13 2.34 5.93 86.38 0.51 2.85 16 16 N -0.71 -8.89 5.56 -463.05 -2.57 -11.47 16 17 C 0.51 8.15 7.90 87.66 0.69 8.84 16 18 O -0.57 -13.49 15.67 -3.04 -0.05 -13.54 16 19 C 0.10 1.29 6.15 85.63 0.53 1.81 16 20 N -0.71 -10.51 5.52 -470.14 -2.59 -13.11 16 21 C 0.59 11.32 7.81 86.65 0.68 12.00 16 22 O -0.58 -15.00 16.98 -4.07 -0.07 -15.07 16 23 C -0.27 -4.24 6.31 -18.99 -0.12 -4.36 16 24 C -0.19 -2.66 11.01 23.65 0.26 -2.40 16 25 C -0.02 -0.21 12.03 66.89 0.80 0.60 16 26 O -0.18 -1.91 10.52 4.41 0.05 -1.86 16 27 C 0.04 0.43 11.61 67.39 0.78 1.22 16 28 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 29 H 0.40 18.70 7.90 -92.71 -0.73 17.97 16 30 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.11 2.97 8.14 -2.38 -0.02 2.95 16 32 H 0.35 10.52 8.43 -89.69 -0.76 9.77 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.42 2.47 8.47 -92.71 -0.79 1.68 16 38 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.42 5.36 6.41 -92.71 -0.59 4.77 16 41 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.25 -0.11 8.06 -2.91 -0.02 -0.13 16 43 H 0.24 0.81 7.47 -2.91 -0.02 0.79 16 Total: -1.00 -81.95 384.50 -2.40 -84.35 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -1.76 Total: 34.45 kcal Atomic # 6 Polarization: 20.21 SS G_CDS: 7.13 Total: 27.34 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -9.68 Total: -125.92 kcal Atomic # 8 Polarization: -64.64 SS G_CDS: -0.12 Total: -64.76 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -81.95 -2.40 -84.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127961580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.672 kcal (2) G-P(sol) polarization free energy of solvation -81.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds