Wall clock time and date at job start Tue Mar 31 2020 20:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86809 * 119.99809 * 2 1 4 4 H 1.48495 * 109.46838 * 270.00124 * 3 2 1 5 5 H 1.48505 * 109.46870 * 29.99894 * 3 2 1 6 6 H 1.48496 * 109.47238 * 149.99663 * 3 2 1 7 7 C 1.38948 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99610 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99823 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99660 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00145 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00183 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47282 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99702 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46829 * 179.97438 * 14 13 12 16 16 N 1.46504 * 109.46848 * 180.02562 * 15 14 13 17 17 C 1.34779 * 119.99928 * 180.02562 * 16 15 14 18 18 O 1.21617 * 119.99586 * 0.02562 * 17 16 15 19 19 C 1.47377 * 120.00392 * 179.97438 * 17 16 15 20 20 C 1.47021 * 127.18951 * 359.97438 * 19 17 16 21 21 C 1.34178 * 105.95478 * 179.97438 * 20 19 17 22 22 O 1.34213 * 109.12071 * 0.26572 * 21 20 19 23 23 C 1.33655 * 110.91275 * 359.54836 * 22 21 20 24 24 C 1.50693 * 125.80192 * 180.14449 * 23 22 21 25 25 C 1.50708 * 109.47200 * 270.35313 * 24 23 22 26 26 N 1.34773 * 119.99942 * 180.02562 * 25 24 23 27 27 O 1.21271 * 119.99965 * 359.97438 * 25 24 23 28 28 H 0.96999 * 120.00178 * 0.02562 * 1 2 3 29 29 H 0.96988 * 120.00394 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.46993 * 59.99774 * 12 10 9 31 31 H 1.08996 * 109.46563 * 300.00191 * 12 10 9 32 32 H 1.00903 * 110.99430 * 303.95011 * 13 12 10 33 33 H 1.09005 * 109.47414 * 60.00075 * 14 13 12 34 34 H 1.08997 * 109.47436 * 299.99452 * 14 13 12 35 35 H 1.09000 * 109.46826 * 60.00456 * 15 14 13 36 36 H 1.08999 * 109.47378 * 299.99946 * 15 14 13 37 37 H 0.96994 * 120.00474 * 359.97438 * 16 15 14 38 38 H 1.08004 * 127.02167 * 359.96514 * 20 19 17 39 39 H 1.08002 * 125.43554 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.47530 * 30.35120 * 24 23 22 41 41 H 1.09000 * 109.47285 * 150.35588 * 24 23 22 42 42 H 0.97002 * 120.00116 * 359.97438 * 26 25 24 43 43 H 0.96998 * 119.99919 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4404 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1385 0.0014 9 7 3.3799 -1.2032 0.0011 10 6 4.0539 -2.3703 0.0011 11 8 3.4474 -3.4208 0.0011 12 6 5.5609 -2.3703 0.0011 13 7 6.0506 -3.7553 0.0004 14 6 7.5190 -3.7944 0.0010 15 6 7.9904 -5.2500 0.0010 16 7 9.4549 -5.2890 0.0022 17 6 10.0975 -6.4737 0.0019 18 8 9.4615 -7.5103 0.0001 19 6 11.5707 -6.5130 0.0026 20 6 12.4903 -5.3660 0.0030 21 6 13.7276 -5.8851 0.0041 22 8 13.6423 -7.2245 -0.0015 23 6 12.3661 -7.6213 0.0034 24 6 11.8871 -9.0501 0.0025 25 6 11.7293 -9.5262 -1.4187 26 7 11.3080 -10.7823 -1.6658 27 8 11.9805 -8.7787 -2.3400 28 1 -0.4850 0.8400 -0.0004 29 1 3.8649 -0.3632 0.0007 30 1 5.9242 -1.8565 0.8910 31 1 5.9241 -1.8565 -0.8889 32 1 5.6751 -4.2719 0.7817 33 1 7.8956 -3.2909 0.8915 34 1 7.8963 -3.2900 -0.8885 35 1 7.6139 -5.7538 -0.8892 36 1 7.6131 -5.7541 0.8908 37 1 9.9621 -4.4622 0.0025 38 1 12.2243 -4.3192 0.0025 39 1 14.6455 -5.3160 0.0043 40 1 12.6148 -9.6777 0.5171 41 1 10.9271 -9.1119 0.5150 42 1 11.1067 -11.3801 -0.9289 43 1 11.2061 -11.0886 -2.5805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132947442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:59 Heat of formation + Delta-G solvation = -126.812454 kcal Electronic energy + Delta-G solvation = -27537.383855 eV Core-core repulsion = 23196.860636 eV Total energy + Delta-G solvation = -4340.523219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.59619 -40.61009 -40.38578 -40.24813 -37.51083 -36.04235 -35.29676 -34.77421 -34.02797 -33.74334 -32.94024 -30.72206 -28.65263 -27.68924 -25.63023 -24.23993 -23.13319 -22.48409 -21.77140 -21.29432 -20.79128 -20.27449 -19.16342 -18.31567 -18.00672 -17.72996 -17.31478 -17.11281 -16.88710 -16.76468 -16.64737 -16.20346 -16.16583 -15.71611 -15.40130 -15.19194 -14.86126 -14.76897 -14.69105 -14.34326 -14.17936 -13.94578 -13.88680 -13.70202 -13.38934 -12.97241 -12.74585 -12.60084 -12.41708 -12.40282 -11.96903 -11.51178 -11.29188 -11.16978 -10.84104 -10.71105 -10.45977 -10.24929 -10.17966 -9.59888 -9.38790 -8.40886 -6.02329 0.23697 1.14014 1.30826 1.37183 1.45893 1.55316 1.72525 1.95534 2.07148 2.24058 2.24616 2.69090 2.82396 3.15296 3.43876 3.46658 3.72301 3.83399 3.93657 4.00903 4.09778 4.17258 4.18129 4.38950 4.44987 4.46278 4.58258 4.61126 4.75165 4.90369 4.94348 4.97641 5.30467 5.39964 5.52647 5.83513 5.87293 5.99798 6.00763 6.30627 6.38357 6.49056 6.59774 6.88206 7.14854 7.27347 7.39671 7.96698 8.76793 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.001647 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.528130 B =17000.487152 C =17877.474545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.228 1.228 7 C -0.331 4.331 8 H 0.053 0.947 9 N -0.589 5.589 10 C 0.446 3.554 11 O -0.617 6.617 12 C 0.065 3.935 13 N -0.690 5.690 14 C 0.060 3.940 15 C 0.128 3.872 16 N -0.706 5.706 17 C 0.584 3.416 18 O -0.577 6.577 19 C -0.252 4.252 20 C -0.198 4.198 21 C -0.025 4.025 22 O -0.179 6.179 23 C 0.075 3.925 24 C -0.071 4.071 25 C 0.522 3.478 26 N -0.832 5.832 27 O -0.592 6.592 28 H 0.279 0.721 29 H 0.391 0.609 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.347 0.653 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.416 0.584 38 H 0.186 0.814 39 H 0.251 0.749 40 H 0.153 0.847 41 H 0.142 0.858 42 H 0.421 0.579 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.237 -11.285 3.503 38.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.216 4.216 3 Si 0.787 3.213 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.151 1.151 7 C -0.460 4.460 8 H 0.071 0.929 9 N -0.231 5.231 10 C 0.234 3.766 11 O -0.501 6.501 12 C -0.067 4.067 13 N -0.323 5.323 14 C -0.069 4.069 15 C 0.004 3.996 16 N -0.358 5.358 17 C 0.373 3.627 18 O -0.459 6.459 19 C -0.257 4.257 20 C -0.216 4.216 21 C -0.090 4.090 22 O -0.075 6.075 23 C 0.022 3.978 24 C -0.110 4.110 25 C 0.307 3.693 26 N -0.396 5.396 27 O -0.472 6.472 28 H 0.089 0.911 29 H 0.227 0.773 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.165 0.835 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.253 0.747 38 H 0.204 0.796 39 H 0.267 0.733 40 H 0.171 0.829 41 H 0.159 0.841 42 H 0.253 0.747 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 35.559 -12.260 2.378 37.688 hybrid contribution -0.515 1.128 0.651 1.400 sum 35.043 -11.132 3.029 36.894 Atomic orbital electron populations 1.69812 1.08228 1.29287 1.50228 1.26170 0.96510 1.02879 0.96002 0.85329 0.79542 0.76454 0.79944 1.18197 1.20090 1.15111 1.19008 0.81599 0.94909 1.50465 0.92850 1.42005 1.05755 1.07629 1.67732 1.21050 0.91158 0.83290 0.81150 1.90558 1.71489 1.32911 1.55155 1.21627 0.89326 0.91204 1.04542 1.59884 1.07704 1.12730 1.52015 1.22056 0.86821 0.94907 1.03131 1.21092 0.79043 0.97515 1.01966 1.45468 1.07107 1.08520 1.74704 1.17505 0.86329 0.83596 0.75252 1.90717 1.68767 1.34033 1.52409 1.21204 0.93248 0.94993 1.16244 1.23200 0.91403 0.99880 1.07151 1.24755 1.01526 0.78829 1.03888 1.83744 1.27206 1.25567 1.70933 1.22059 0.81152 0.95888 0.98747 1.20427 1.06311 0.88706 0.95549 1.20538 0.75375 0.82399 0.90972 1.43592 1.69120 1.13293 1.13641 1.90756 1.52478 1.56060 1.47911 0.91142 0.77330 0.89772 0.86355 0.83454 0.91934 0.88775 0.92663 0.92020 0.74697 0.79647 0.73332 0.82934 0.84062 0.74722 0.75951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.96 21.66 0.30 -56.26 16 2 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 3 Si 0.97 38.29 27.74 68.60 1.90 40.20 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.23 -7.42 6.52 99.48 0.65 -6.77 16 7 C -0.33 -19.43 10.16 84.04 0.85 -18.57 16 8 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 9 N -0.59 -27.50 5.09 -306.98 -1.56 -29.07 16 10 C 0.45 19.93 7.82 87.66 0.69 20.62 16 11 O -0.62 -34.52 15.78 -3.07 -0.05 -34.57 16 12 C 0.07 1.87 6.17 85.56 0.53 2.40 16 13 N -0.69 -19.55 6.13 -517.94 -3.17 -22.73 16 14 C 0.06 1.11 5.80 86.31 0.50 1.61 16 15 C 0.13 2.80 5.93 86.38 0.51 3.31 16 16 N -0.71 -13.16 5.55 -466.40 -2.59 -15.75 16 17 C 0.58 14.10 7.81 86.65 0.68 14.78 16 18 O -0.58 -17.46 14.84 -4.08 -0.06 -17.52 16 19 C -0.25 -5.12 6.31 -18.99 -0.12 -5.24 16 20 C -0.20 -2.52 10.60 23.65 0.25 -2.27 16 21 C -0.02 -0.27 12.03 66.89 0.80 0.54 16 22 O -0.18 -2.97 10.52 4.47 0.05 -2.93 16 23 C 0.08 1.45 5.87 25.26 0.15 1.60 16 24 C -0.07 -1.03 5.71 29.10 0.17 -0.86 16 25 C 0.52 10.01 8.09 87.66 0.71 10.72 16 26 N -0.83 -8.47 8.87 -173.54 -1.54 -10.01 16 27 O -0.59 -17.58 16.87 -3.00 -0.05 -17.63 16 28 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.39 14.82 5.76 -92.72 -0.53 14.28 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.35 10.64 8.43 -89.69 -0.76 9.88 16 33 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.42 4.87 7.64 -92.71 -0.71 4.16 16 38 H 0.19 1.09 7.74 -2.91 -0.02 1.06 16 39 H 0.25 0.23 8.06 -2.91 -0.02 0.20 16 40 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.14 2.14 6.48 -2.39 -0.02 2.12 16 42 H 0.42 1.16 8.83 -92.71 -0.82 0.34 16 43 H 0.41 3.77 8.93 -92.71 -0.83 2.94 16 Total: -1.00 -96.78 378.45 -3.16 -99.94 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -2.57 Total: 38.17 kcal Atomic # 6 Polarization: 21.97 SS G_CDS: 6.18 Total: 28.15 kcal Atomic # 7 Polarization: -125.25 SS G_CDS: -8.56 Total: -133.82 kcal Atomic # 8 Polarization: -72.53 SS G_CDS: -0.11 Total: -72.65 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.90 Total: 40.20 kcal Total: -96.78 -3.16 -99.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132947442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.868 kcal (2) G-P(sol) polarization free energy of solvation -96.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds