Wall clock time and date at job start Tue Mar 31 2020 21:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37975 * 120.07647 * 2 1 4 4 C 1.38336 * 120.14848 * 179.97438 * 3 2 1 5 5 C 1.38382 * 120.28934 * 0.02562 * 4 3 2 6 6 C 1.37931 * 120.14631 * 359.97438 * 5 4 3 7 7 C 1.39554 * 120.07283 * 179.97438 * 2 1 3 8 8 C 1.47855 * 120.14557 * 0.04819 * 7 2 1 9 9 O 1.21554 * 119.99788 * 353.15874 * 8 7 2 10 10 N 1.34774 * 120.00052 * 173.16423 * 8 7 2 11 11 N 1.40102 * 120.00029 * 179.97438 * 10 8 7 12 12 C 1.34773 * 119.99997 * 179.97438 * 11 10 8 13 13 O 1.21282 * 120.00003 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99952 * 179.97438 * 12 11 10 15 15 H 1.09000 * 109.47409 * 308.81864 * 14 12 11 16 16 C 1.50706 * 109.46993 * 68.81511 * 14 12 11 17 17 H 1.07998 * 119.99755 * 59.47999 * 16 14 12 18 18 C 1.37872 * 119.99999 * 239.48537 * 16 14 12 19 19 N 1.31514 * 120.00210 * 176.66507 * 18 16 14 20 20 Si 1.86801 * 120.00239 * 356.66037 * 18 16 14 21 21 H 1.48504 * 109.46908 * 84.53776 * 20 18 16 22 22 H 1.48497 * 109.47472 * 204.54382 * 20 18 16 23 23 H 1.48502 * 109.46878 * 324.54298 * 20 18 16 24 24 C 1.50694 * 109.47324 * 188.81282 * 14 12 11 25 25 C 1.38234 * 120.00240 * 292.78939 * 24 14 12 26 26 C 1.38240 * 119.99959 * 179.81038 * 25 24 14 27 27 C 1.38233 * 119.99817 * 0.39285 * 26 25 24 28 28 C 1.38234 * 120.00201 * 359.85652 * 27 26 25 29 29 C 1.38227 * 119.99957 * 359.95884 * 28 27 26 30 30 H 1.08998 * 109.47655 * 262.99325 * 1 2 3 31 31 H 1.08998 * 109.47263 * 22.99874 * 1 2 3 32 32 H 1.09007 * 109.47133 * 142.99597 * 1 2 3 33 33 H 1.08002 * 119.92587 * 0.02562 * 3 2 1 34 34 H 1.07992 * 119.85498 * 180.02562 * 4 3 2 35 35 H 1.08003 * 119.92316 * 180.26914 * 5 4 3 36 36 H 1.08000 * 120.07240 * 180.02562 * 6 5 4 37 37 H 0.96999 * 119.99796 * 359.97438 * 10 8 7 38 38 H 0.97001 * 119.99263 * 359.97438 * 11 10 8 39 39 H 0.96995 * 120.00059 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.00046 * 359.97438 * 25 24 14 41 41 H 1.08005 * 119.99635 * 180.22984 * 26 25 24 42 42 H 1.07999 * 119.99429 * 179.83910 * 27 26 25 43 43 H 1.07993 * 119.99660 * 179.97438 * 28 27 26 44 44 H 1.08003 * 120.00381 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0017 0.0005 6 6 3.6022 -1.1989 0.0005 7 6 2.2063 -1.2077 0.0005 8 6 1.4719 -2.4910 0.0000 9 8 0.2628 -2.4993 0.1246 10 7 2.1431 -3.6514 -0.1384 11 7 1.4473 -4.8675 -0.1383 12 6 2.1184 -6.0279 -0.2772 13 8 3.3248 -6.0195 -0.4018 14 6 1.3700 -7.3359 -0.2766 15 1 0.7175 -7.3808 0.5954 16 6 0.5406 -7.4407 -1.5305 17 1 1.0185 -7.4060 -2.4984 18 6 -0.8281 -7.5808 -1.4420 19 7 -1.5586 -7.6064 -2.5353 20 14 -1.6451 -7.7345 0.2308 21 1 -1.8804 -6.3803 0.7930 22 1 -2.9424 -8.4423 0.0851 23 1 -0.7618 -8.5031 1.1443 24 6 2.3530 -8.4771 -0.2277 25 6 3.1876 -8.7170 -1.3032 26 6 4.0920 -9.7615 -1.2567 27 6 4.1561 -10.5710 -0.1380 28 6 3.3179 -10.3343 0.9354 29 6 2.4162 -9.2875 0.8905 30 1 -0.3634 -0.1254 1.0199 31 1 -0.3634 0.9460 -0.4015 32 1 -0.3634 -0.8207 -0.6186 33 1 1.6585 2.1293 0.0004 34 1 4.1182 2.1330 0.0010 35 1 5.3613 0.0099 0.0054 36 1 4.1493 -2.1301 0.0010 37 1 3.1079 -3.6447 -0.2380 38 1 0.4825 -4.8740 -0.0383 39 1 -2.5215 -7.7053 -2.4730 40 1 3.1350 -8.0868 -2.1787 41 1 4.7467 -9.9466 -2.0956 42 1 4.8609 -11.3885 -0.1028 43 1 3.3677 -10.9670 1.8091 44 1 1.7616 -9.1023 1.7293 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135296713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:25 Heat of formation + Delta-G solvation = 12.028461 kcal Electronic energy + Delta-G solvation = -28219.103156 eV Core-core repulsion = 24295.449794 eV Total energy + Delta-G solvation = -3923.653362 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.53141 -39.45058 -38.45429 -37.70020 -35.03197 -33.78020 -32.75849 -32.10942 -31.62684 -30.20269 -30.05675 -27.76939 -26.99013 -24.12570 -23.56075 -22.04374 -21.90099 -21.23556 -21.01318 -19.64527 -17.80921 -17.45001 -17.20455 -16.21360 -16.09527 -15.69509 -15.44837 -15.26222 -14.79846 -14.67016 -14.42365 -14.07224 -13.85729 -13.67580 -13.32639 -13.23833 -13.08232 -12.90649 -12.68670 -12.19251 -12.17579 -12.14812 -11.95413 -11.90445 -11.29033 -11.26916 -11.11674 -10.85051 -10.53789 -10.27028 -10.05207 -9.74168 -9.61015 -9.27926 -9.22421 -8.92149 -8.83500 -8.20666 -7.93320 -7.86727 -6.38482 -4.43724 0.68121 1.13664 1.99705 2.12406 2.33288 2.75598 3.10315 3.17187 3.20849 3.39844 3.70394 4.13139 4.25762 4.51238 4.57465 4.65538 4.73899 4.91027 4.96161 5.09517 5.24286 5.47165 5.49279 5.52808 5.62408 5.64866 5.70106 5.79290 5.84302 5.91993 6.05078 6.08313 6.16272 6.20564 6.25958 6.32434 6.44143 6.64096 6.68224 6.78102 7.07288 7.09910 7.11439 7.16273 7.19249 7.50020 7.71779 8.00084 8.15003 8.22209 8.64003 8.96031 9.17032 10.72416 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.003347 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.276643 B = 8363.602254 C = 9994.296839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.019 4.019 3 C -0.132 4.132 4 C -0.091 4.091 5 C -0.134 4.134 6 C -0.082 4.082 7 C -0.127 4.127 8 C 0.551 3.449 9 O -0.532 6.532 10 N -0.516 5.516 11 N -0.521 5.521 12 C 0.530 3.470 13 O -0.562 6.562 14 C 0.041 3.959 15 H 0.071 0.929 16 C -0.515 4.515 17 H 0.087 0.913 18 C 0.085 3.915 19 N -0.874 5.874 20 Si 0.861 3.139 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.259 1.259 24 C -0.026 4.026 25 C -0.073 4.073 26 C -0.129 4.129 27 C -0.140 4.140 28 C -0.129 4.129 29 C -0.130 4.130 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.426 0.574 38 H 0.433 0.567 39 H 0.272 0.728 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.792 11.790 6.598 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.020 4.020 3 C -0.150 4.150 4 C -0.110 4.110 5 C -0.152 4.152 6 C -0.101 4.101 7 C -0.132 4.132 8 C 0.338 3.662 9 O -0.409 6.409 10 N -0.262 5.262 11 N -0.270 5.270 12 C 0.319 3.681 13 O -0.439 6.439 14 C 0.018 3.982 15 H 0.089 0.911 16 C -0.552 4.552 17 H 0.105 0.895 18 C -0.121 4.121 19 N -0.508 5.508 20 Si 0.687 3.313 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.184 1.184 24 C -0.027 4.027 25 C -0.091 4.091 26 C -0.147 4.147 27 C -0.158 4.158 28 C -0.147 4.147 29 C -0.149 4.149 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.268 0.732 38 H 0.276 0.724 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.569 11.739 6.494 15.919 hybrid contribution -0.469 -0.113 0.668 0.825 sum 8.100 11.626 7.163 15.877 Atomic orbital electron populations 1.21111 0.89807 1.03146 1.03888 1.20055 0.97052 0.91249 0.93649 1.21062 0.94263 0.97432 1.02288 1.21351 0.94273 0.98284 0.97042 1.21072 1.00265 0.92060 1.01849 1.21373 0.92877 0.98935 0.96886 1.19573 0.93470 0.92319 1.07813 1.18301 0.87407 0.82522 0.77947 1.90766 1.13292 1.86520 1.50345 1.44720 1.09657 0.97946 1.73847 1.45291 1.09945 0.95280 1.76530 1.22288 0.87995 0.84518 0.73289 1.90592 1.14655 1.87390 1.51246 1.18323 0.93674 0.85346 1.00894 0.91147 1.20580 0.90923 1.52723 0.90965 0.89538 1.25063 0.96891 0.93452 0.96673 1.69834 1.06554 1.46616 1.27786 0.87064 0.79794 0.79701 0.84738 1.19087 1.20482 1.18391 1.19767 0.94072 0.96031 0.92813 1.20891 0.93928 0.96153 0.98133 1.21040 0.99451 0.96316 0.97934 1.20895 1.00280 1.00113 0.94560 1.20890 0.97154 0.98261 0.98394 1.20991 0.99395 0.96676 0.97813 0.90509 0.92383 0.88402 0.85305 0.85581 0.85324 0.85417 0.73170 0.72409 0.91798 0.86332 0.87026 0.87242 0.87121 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.71 36.01 0.31 -1.18 16 2 C -0.02 -0.23 5.91 -104.23 -0.62 -0.85 16 3 C -0.13 -1.26 9.66 -39.64 -0.38 -1.64 16 4 C -0.09 -0.77 10.04 -39.49 -0.40 -1.16 16 5 C -0.13 -1.20 10.03 -39.64 -0.40 -1.60 16 6 C -0.08 -0.89 9.52 -39.19 -0.37 -1.27 16 7 C -0.13 -1.69 5.87 -104.96 -0.62 -2.31 16 8 C 0.55 9.05 7.81 -12.33 -0.10 8.95 16 9 O -0.53 -10.05 13.21 5.32 0.07 -9.98 16 10 N -0.52 -8.76 6.21 30.53 0.19 -8.57 16 11 N -0.52 -10.35 6.26 31.22 0.20 -10.16 16 12 C 0.53 11.40 7.11 -10.99 -0.08 11.32 16 13 O -0.56 -12.58 15.16 5.56 0.08 -12.50 16 14 C 0.04 0.91 2.25 -94.07 -0.21 0.70 16 15 H 0.07 1.52 4.40 -51.93 -0.23 1.29 16 16 C -0.51 -13.16 8.30 -34.44 -0.29 -13.44 16 17 H 0.09 2.45 7.59 -52.49 -0.40 2.05 16 18 C 0.09 2.23 5.47 -17.82 -0.10 2.13 16 19 N -0.87 -24.51 13.96 55.43 0.77 -23.74 16 20 Si 0.86 19.25 27.04 -169.99 -4.60 14.66 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.26 -5.50 6.65 56.52 0.38 -5.12 16 24 C -0.03 -0.55 4.38 -104.62 -0.46 -1.01 16 25 C -0.07 -1.52 8.18 -39.58 -0.32 -1.85 16 26 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 27 C -0.14 -2.31 10.05 -39.58 -0.40 -2.71 16 28 C -0.13 -2.18 10.05 -39.59 -0.40 -2.58 16 29 C -0.13 -2.51 9.67 -39.58 -0.38 -2.90 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.56 8.04 -51.93 -0.42 0.14 16 32 H 0.10 1.45 5.91 -51.93 -0.31 1.14 16 33 H 0.13 0.93 8.05 -52.49 -0.42 0.50 16 34 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.13 1.23 6.46 -52.49 -0.34 0.89 16 37 H 0.43 6.45 6.08 -182.60 -1.11 5.34 16 38 H 0.43 8.87 8.00 -182.59 -1.46 7.41 16 39 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 40 H 0.12 2.58 7.51 -52.49 -0.39 2.18 16 41 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.11 1.98 7.96 -52.48 -0.42 1.56 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -30.73 372.49 -10.46 -41.19 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -7.19 Total: 17.60 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -5.60 Total: -14.11 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 1.16 Total: -42.47 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.15 Total: -22.48 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.60 Total: 14.66 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.73 -10.46 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135296713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.220 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds