Wall clock time and date at job start Tue Mar 31 2020 20:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48501 * 109.47347 * 270.00618 * 3 2 1 5 5 H 1.48502 * 109.47185 * 30.00446 * 3 2 1 6 6 H 1.48497 * 109.47563 * 150.00174 * 3 2 1 7 7 C 1.40053 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99873 * 179.97438 * 7 2 1 9 9 C 1.46369 * 120.00089 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00023 * 5.20845 * 9 7 2 11 11 N 1.34780 * 119.99869 * 185.20744 * 9 7 2 12 12 C 1.46972 * 120.59151 * 174.82039 * 11 9 7 13 13 C 1.53367 * 108.63383 * 235.20553 * 12 11 9 14 14 N 1.46963 * 108.63808 * 310.58312 * 13 12 11 15 15 C 1.34787 * 120.59032 * 235.20486 * 14 13 12 16 16 O 1.21278 * 119.99839 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99886 * 179.97438 * 15 14 13 18 18 C 1.52995 * 109.46940 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47019 * 180.02562 * 18 17 15 20 20 H 1.09004 * 110.53552 * 55.70042 * 19 18 17 21 21 N 1.47309 * 110.59935 * 292.87240 * 19 18 17 22 22 C 1.34528 * 106.61731 * 241.32024 * 21 19 18 23 23 O 1.21538 * 123.77182 * 179.97438 * 22 21 19 24 24 N 1.33791 * 112.45847 * 359.97438 * 22 21 19 25 25 C 1.35120 * 111.68871 * 0.09370 * 24 22 21 26 26 O 1.21234 * 127.34003 * 179.97438 * 25 24 22 27 27 C 1.46954 * 118.81639 * 55.47543 * 14 13 12 28 28 C 1.46963 * 120.59531 * 354.80883 * 11 9 7 29 29 H 0.96994 * 120.00283 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.60166 * 115.46628 * 12 11 9 31 31 H 1.08997 * 109.60944 * 354.95324 * 12 11 9 32 32 H 1.08997 * 109.60993 * 190.83024 * 13 12 11 33 33 H 1.09005 * 109.61156 * 70.32292 * 13 12 11 34 34 H 1.09006 * 109.47395 * 59.99838 * 17 15 14 35 35 H 1.08996 * 109.47442 * 300.00166 * 17 15 14 36 36 H 1.08997 * 109.47511 * 60.00203 * 18 17 15 37 37 H 1.09002 * 109.47528 * 299.99493 * 18 17 15 38 38 H 0.96996 * 126.69545 * 61.28319 * 21 19 18 39 39 H 0.97011 * 124.18085 * 180.02562 * 24 22 21 40 40 H 1.09002 * 109.61112 * 64.26653 * 27 14 13 41 41 H 1.09004 * 109.61669 * 184.78174 * 27 14 13 42 42 H 1.09005 * 109.60310 * 244.53724 * 28 11 9 43 43 H 1.09006 * 109.61168 * 4.86738 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5382 1.4402 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0620 -2.4827 -0.0957 11 7 1.9449 -3.6453 0.1049 12 6 1.2188 -4.9179 0.2202 13 6 1.6978 -5.6426 1.4841 14 7 3.1673 -5.6629 1.4855 15 6 3.8371 -6.8278 1.5910 16 8 3.2270 -7.8716 1.6864 17 6 5.3440 -6.8332 1.5904 18 6 5.8489 -8.2716 1.7202 19 6 7.3789 -8.2770 1.7202 20 1 7.7636 -7.6295 2.5083 21 7 7.8987 -7.8594 0.4067 22 6 8.6095 -8.8959 -0.0730 23 8 9.1788 -8.8854 -1.1468 24 7 8.6197 -9.9396 0.7640 25 6 7.9079 -9.6880 1.8846 26 8 7.7301 -10.4318 2.8253 27 6 3.8933 -4.3900 1.3758 28 6 3.4144 -3.6657 0.1063 29 1 -0.4850 0.8400 0.0004 30 1 1.4218 -5.5354 -0.6547 31 1 0.1488 -4.7232 0.2934 32 1 1.3177 -6.6642 1.4863 33 1 1.3385 -5.1142 2.3673 34 1 5.7099 -6.2421 2.4300 35 1 5.7086 -6.4034 0.6574 36 1 5.4832 -8.8623 0.8803 37 1 5.4845 -8.7018 2.6531 38 1 7.7559 -7.0041 -0.0280 39 1 9.0805 -10.7750 0.5879 40 1 3.6868 -3.7744 2.2513 41 1 4.9637 -4.5840 1.3063 42 1 3.7737 -4.1941 -0.7768 43 1 3.7945 -2.6440 0.1010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137370042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:27 Heat of formation + Delta-G solvation = -106.307830 kcal Electronic energy + Delta-G solvation = -29179.934461 eV Core-core repulsion = 24840.300389 eV Total energy + Delta-G solvation = -4339.634072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.76585 -40.16550 -39.05154 -38.11880 -36.86204 -35.96197 -35.00721 -33.22795 -32.65446 -32.56187 -31.09496 -28.49141 -27.34580 -26.06507 -24.18482 -23.29681 -23.01974 -22.02958 -21.66872 -19.90038 -18.82387 -18.53509 -17.51578 -17.41877 -16.96777 -16.41049 -16.23102 -16.05632 -15.86756 -15.73167 -15.52103 -14.79678 -14.62539 -14.59314 -14.33248 -14.10390 -13.99534 -13.61301 -13.14574 -12.80616 -12.69529 -12.37179 -12.00061 -11.75578 -11.56749 -11.50209 -11.40247 -11.26860 -11.08584 -11.05086 -10.83616 -10.82411 -10.71163 -10.34069 -10.17486 -10.00352 -9.78923 -8.99890 -8.76102 -7.73530 -7.35807 -6.32568 -4.79086 1.11478 1.95605 2.55792 2.57309 2.63991 2.96741 3.04920 3.12101 3.14567 3.48079 3.95630 4.03030 4.27935 4.36467 4.42866 4.48900 4.68440 4.74927 4.88281 5.02502 5.19674 5.22053 5.43001 5.44850 5.49239 5.53958 5.56543 5.68244 5.82557 5.87175 5.96455 6.17455 6.25894 6.27140 6.43107 6.43716 6.61603 6.89851 7.31623 7.40082 7.44216 7.68323 7.95653 8.13271 8.17806 8.88718 9.25904 10.43181 10.61653 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.002354 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.334211 B =11890.992133 C =12827.480548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.558 3.442 10 O -0.574 6.574 11 N -0.643 5.643 12 C 0.108 3.892 13 C 0.099 3.901 14 N -0.604 5.604 15 C 0.512 3.488 16 O -0.549 6.549 17 C -0.139 4.139 18 C -0.104 4.104 19 C 0.091 3.909 20 H 0.134 0.866 21 N -0.721 5.721 22 C 0.705 3.295 23 O -0.544 6.544 24 N -0.682 5.682 25 C 0.531 3.469 26 O -0.461 6.461 27 C 0.088 3.912 28 C 0.108 3.892 29 H 0.270 0.730 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.443 0.557 39 H 0.433 0.567 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.297 -12.371 4.841 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.457 6.457 11 N -0.382 5.382 12 C -0.017 4.017 13 C -0.024 4.024 14 N -0.336 5.336 15 C 0.300 3.700 16 O -0.427 6.427 17 C -0.179 4.179 18 C -0.143 4.143 19 C -0.018 4.018 20 H 0.151 0.849 21 N -0.387 5.387 22 C 0.404 3.596 23 O -0.417 6.417 24 N -0.353 5.353 25 C 0.316 3.684 26 O -0.329 6.329 27 C -0.035 4.035 28 C -0.018 4.018 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.288 0.712 39 H 0.275 0.725 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 16.245 -13.124 4.815 21.432 hybrid contribution 0.720 0.917 -0.267 1.196 sum 16.965 -12.207 4.548 21.390 Atomic orbital electron populations 1.69996 1.07121 1.27530 1.34748 1.25734 0.94630 1.00376 0.92545 0.86376 0.80109 0.81390 0.78930 1.19679 1.20424 1.18839 1.20924 0.93460 0.89140 1.54621 0.90868 1.18301 0.86957 0.82099 0.76177 1.90606 1.14409 1.85877 1.54778 1.48201 1.04354 1.05953 1.79696 1.21504 0.99205 0.86112 0.94883 1.22105 0.78733 1.02046 0.99566 1.48117 1.07540 1.06406 1.71584 1.20434 0.89741 0.83363 0.76422 1.90697 1.70085 1.31318 1.50631 1.21653 0.93484 0.98094 1.04695 1.21560 0.89260 0.97335 1.06107 1.22212 0.97412 0.94193 0.87936 0.84895 1.45611 1.54625 1.17628 1.20798 1.15844 0.79813 0.80665 0.83290 1.91081 1.48632 1.81539 1.20463 1.44417 1.51425 1.18967 1.20530 1.20835 0.77034 0.89076 0.81439 1.90875 1.56332 1.53748 1.31959 1.22430 0.95747 0.84625 1.00738 1.21887 0.83467 1.01933 0.94498 0.91921 0.93587 0.88596 0.88922 0.91222 0.88114 0.88673 0.89668 0.88162 0.71219 0.72499 0.90483 0.89763 0.93524 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.83 11.84 55.55 0.66 -21.18 16 2 C 0.09 2.28 5.50 -17.37 -0.10 2.19 16 3 Si 0.91 18.68 29.56 -169.99 -5.02 13.66 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.55 -14.02 8.88 -35.63 -0.32 -14.34 16 8 H 0.07 1.66 5.63 -52.48 -0.30 1.36 16 9 C 0.56 14.77 7.61 -12.99 -0.10 14.67 16 10 O -0.57 -17.70 14.47 5.20 0.08 -17.62 16 11 N -0.64 -13.24 2.95 -173.87 -0.51 -13.75 16 12 C 0.11 1.98 6.58 -3.59 -0.02 1.96 16 13 C 0.10 1.53 6.59 -3.60 -0.02 1.50 16 14 N -0.60 -7.92 2.94 -172.22 -0.51 -8.43 16 15 C 0.51 6.18 7.70 -10.98 -0.08 6.10 16 16 O -0.55 -8.59 15.39 5.56 0.09 -8.50 16 17 C -0.14 -0.92 3.95 -27.89 -0.11 -1.03 16 18 C -0.10 -0.69 4.27 -26.73 -0.11 -0.80 16 19 C 0.09 0.43 3.67 -68.20 -0.25 0.18 16 20 H 0.13 0.30 8.14 -51.93 -0.42 -0.13 16 21 N -0.72 -3.63 5.98 -59.19 -0.35 -3.99 16 22 C 0.70 5.56 9.00 -88.02 -0.79 4.77 16 23 O -0.54 -6.46 18.04 5.33 0.10 -6.36 16 24 N -0.68 -4.28 5.72 -15.71 -0.09 -4.37 16 25 C 0.53 3.70 8.17 -10.39 -0.08 3.61 16 26 O -0.46 -4.63 18.02 5.60 0.10 -4.53 16 27 C 0.09 1.02 6.53 -3.37 -0.02 1.00 16 28 C 0.11 1.65 6.52 -3.37 -0.02 1.63 16 29 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.98 7.02 -51.93 -0.36 1.61 16 32 H 0.09 1.41 6.99 -51.93 -0.36 1.05 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.10 0.43 7.90 -51.93 -0.41 0.02 16 35 H 0.10 0.46 7.06 -51.93 -0.37 0.09 16 36 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 38 H 0.44 1.50 8.44 -40.82 -0.34 1.16 16 39 H 0.43 2.01 8.96 -40.82 -0.37 1.64 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.60 5.91 -51.93 -0.31 0.30 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.11 1.68 5.29 -51.93 -0.27 1.41 16 LS Contribution 359.61 15.07 5.42 5.42 Total: -1.00 -38.44 359.61 -7.27 -45.71 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.18 Total: 2.51 kcal Atomic # 6 Polarization: 23.47 SS G_CDS: -2.04 Total: 21.44 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.81 Total: -51.71 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: 0.36 Total: -37.02 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.44 -7.27 -45.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137370042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.599 kcal (2) G-P(sol) polarization free energy of solvation -38.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds