Wall clock time and date at job start Tue Mar 31 2020 20:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48501 * 109.47347 * 270.00618 * 3 2 1 5 5 H 1.48502 * 109.47185 * 30.00446 * 3 2 1 6 6 H 1.48497 * 109.47563 * 150.00174 * 3 2 1 7 7 C 1.40053 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99873 * 179.97438 * 7 2 1 9 9 C 1.46369 * 120.00089 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00023 * 5.20845 * 9 7 2 11 11 N 1.34780 * 119.99869 * 185.20744 * 9 7 2 12 12 C 1.46972 * 120.59151 * 174.82039 * 11 9 7 13 13 C 1.53367 * 108.63383 * 235.20553 * 12 11 9 14 14 N 1.46963 * 108.63808 * 310.58312 * 13 12 11 15 15 C 1.34787 * 120.59032 * 235.20486 * 14 13 12 16 16 O 1.21278 * 119.99839 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99886 * 179.97438 * 15 14 13 18 18 C 1.52995 * 109.46940 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47019 * 180.02562 * 18 17 15 20 20 H 1.09004 * 110.53552 * 55.70042 * 19 18 17 21 21 N 1.47309 * 110.59935 * 292.87240 * 19 18 17 22 22 C 1.34528 * 106.61731 * 241.32024 * 21 19 18 23 23 O 1.21538 * 123.77182 * 179.97438 * 22 21 19 24 24 N 1.33791 * 112.45847 * 359.97438 * 22 21 19 25 25 C 1.35120 * 111.68871 * 0.09370 * 24 22 21 26 26 O 1.21234 * 127.34003 * 179.97438 * 25 24 22 27 27 C 1.46954 * 118.81639 * 55.47543 * 14 13 12 28 28 C 1.46963 * 120.59531 * 354.80883 * 11 9 7 29 29 H 0.96994 * 120.00283 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.60166 * 115.46628 * 12 11 9 31 31 H 1.08997 * 109.60944 * 354.95324 * 12 11 9 32 32 H 1.08997 * 109.60993 * 190.83024 * 13 12 11 33 33 H 1.09005 * 109.61156 * 70.32292 * 13 12 11 34 34 H 1.09006 * 109.47395 * 59.99838 * 17 15 14 35 35 H 1.08996 * 109.47442 * 300.00166 * 17 15 14 36 36 H 1.08997 * 109.47511 * 60.00203 * 18 17 15 37 37 H 1.09002 * 109.47528 * 299.99493 * 18 17 15 38 38 H 0.96996 * 126.69545 * 61.28319 * 21 19 18 39 39 H 0.97011 * 124.18085 * 180.02562 * 24 22 21 40 40 H 1.09002 * 109.61112 * 64.26653 * 27 14 13 41 41 H 1.09004 * 109.61669 * 184.78174 * 27 14 13 42 42 H 1.09005 * 109.60310 * 244.53724 * 28 11 9 43 43 H 1.09006 * 109.61168 * 4.86738 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5382 1.4402 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0620 -2.4827 -0.0957 11 7 1.9449 -3.6453 0.1049 12 6 1.2188 -4.9179 0.2202 13 6 1.6978 -5.6426 1.4841 14 7 3.1673 -5.6629 1.4855 15 6 3.8371 -6.8278 1.5910 16 8 3.2270 -7.8716 1.6864 17 6 5.3440 -6.8332 1.5904 18 6 5.8489 -8.2716 1.7202 19 6 7.3789 -8.2770 1.7202 20 1 7.7636 -7.6295 2.5083 21 7 7.8987 -7.8594 0.4067 22 6 8.6095 -8.8959 -0.0730 23 8 9.1788 -8.8854 -1.1468 24 7 8.6197 -9.9396 0.7640 25 6 7.9079 -9.6880 1.8846 26 8 7.7301 -10.4318 2.8253 27 6 3.8933 -4.3900 1.3758 28 6 3.4144 -3.6657 0.1063 29 1 -0.4850 0.8400 0.0004 30 1 1.4218 -5.5354 -0.6547 31 1 0.1488 -4.7232 0.2934 32 1 1.3177 -6.6642 1.4863 33 1 1.3385 -5.1142 2.3673 34 1 5.7099 -6.2421 2.4300 35 1 5.7086 -6.4034 0.6574 36 1 5.4832 -8.8623 0.8803 37 1 5.4845 -8.7018 2.6531 38 1 7.7559 -7.0041 -0.0280 39 1 9.0805 -10.7750 0.5879 40 1 3.6868 -3.7744 2.2513 41 1 4.9637 -4.5840 1.3063 42 1 3.7737 -4.1941 -0.7768 43 1 3.7945 -2.6440 0.1010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137370042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:26 Heat of formation + Delta-G solvation = -139.661558 kcal Electronic energy + Delta-G solvation = -29181.380787 eV Core-core repulsion = 24840.300389 eV Total energy + Delta-G solvation = -4341.080398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.31216 -41.24146 -39.72828 -39.63825 -37.63777 -37.38684 -35.60360 -34.80572 -34.41344 -33.36024 -32.27796 -29.32597 -28.82096 -27.55308 -25.11025 -24.32611 -23.75238 -23.16995 -22.29622 -21.30877 -19.81466 -19.38199 -18.66278 -17.98834 -17.97636 -17.56349 -17.30044 -17.01918 -16.79998 -16.70906 -16.40588 -16.15757 -15.93922 -15.67223 -15.45065 -15.26631 -14.93947 -14.50706 -14.43020 -13.88472 -13.75179 -13.42533 -13.37669 -13.11524 -12.99402 -12.75635 -12.69492 -12.29029 -12.27413 -12.15695 -11.98419 -11.94567 -11.89179 -11.46713 -11.34363 -10.90953 -10.80575 -10.47984 -10.02970 -9.75503 -8.96686 -8.26484 -6.81040 0.55101 1.45220 1.45857 1.46324 1.61211 1.66784 1.93618 1.98999 2.21273 2.27555 2.49384 2.85477 2.96996 3.38114 3.62451 3.84164 3.89340 3.94786 4.01154 4.18587 4.26277 4.32857 4.39330 4.41326 4.54340 4.56434 4.70513 4.73358 4.84803 4.88695 4.96765 5.09043 5.14013 5.17779 5.40225 5.47991 5.75542 5.85605 5.91037 6.15968 6.33871 6.40573 6.49977 6.91146 7.15855 7.18608 7.43631 8.48467 8.69856 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.002354 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.334211 B =11890.992133 C =12827.480548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.027 3.973 3 Si 0.995 3.005 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.237 1.237 7 C -0.562 4.562 8 H 0.105 0.895 9 C 0.539 3.461 10 O -0.636 6.636 11 N -0.646 5.646 12 C 0.111 3.889 13 C 0.112 3.888 14 N -0.608 5.608 15 C 0.509 3.491 16 O -0.590 6.590 17 C -0.131 4.131 18 C -0.098 4.098 19 C 0.106 3.894 20 H 0.176 0.824 21 N -0.702 5.702 22 C 0.704 3.296 23 O -0.587 6.587 24 N -0.677 5.677 25 C 0.531 3.469 26 O -0.495 6.495 27 C 0.097 3.903 28 C 0.098 3.902 29 H 0.272 0.728 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.454 0.546 39 H 0.438 0.562 40 H 0.072 0.928 41 H 0.145 0.855 42 H 0.066 0.934 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.413 -11.292 5.654 24.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.188 4.188 3 Si 0.815 3.185 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.159 1.159 7 C -0.598 4.598 8 H 0.123 0.877 9 C 0.346 3.654 10 O -0.523 6.523 11 N -0.383 5.383 12 C -0.014 4.014 13 C -0.013 4.013 14 N -0.340 5.340 15 C 0.300 3.700 16 O -0.471 6.471 17 C -0.170 4.170 18 C -0.137 4.137 19 C -0.002 4.002 20 H 0.193 0.807 21 N -0.368 5.368 22 C 0.403 3.597 23 O -0.464 6.464 24 N -0.347 5.347 25 C 0.318 3.682 26 O -0.365 6.365 27 C -0.026 4.026 28 C -0.025 4.025 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.159 0.841 35 H 0.144 0.856 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.301 0.699 39 H 0.281 0.719 40 H 0.090 0.910 41 H 0.163 0.837 42 H 0.084 0.916 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 20.437 -12.074 5.643 24.399 hybrid contribution -0.592 0.435 -0.545 0.914 sum 19.845 -11.640 5.098 23.565 Atomic orbital electron populations 1.70203 1.09793 1.28851 1.36765 1.27035 0.95404 1.05152 0.91227 0.85047 0.79192 0.75052 0.79225 1.19118 1.20659 1.15947 1.21502 0.95090 0.89149 1.54068 0.87728 1.18782 0.86557 0.84220 0.75855 1.90557 1.17065 1.87317 1.57370 1.48052 1.06913 1.04951 1.78402 1.21472 0.97341 0.85724 0.96856 1.21714 0.81268 1.01112 0.97199 1.48193 1.06182 1.07725 1.71927 1.21438 0.91972 0.81993 0.74646 1.90693 1.71514 1.32736 1.52166 1.21768 0.88694 0.98648 1.07931 1.21434 0.90278 0.97281 1.04736 1.22235 0.95970 0.93352 0.88642 0.80714 1.45550 1.53302 1.17307 1.20665 1.15955 0.79714 0.81254 0.82761 1.91060 1.50645 1.82318 1.22335 1.44395 1.51081 1.19067 1.20204 1.21169 0.76485 0.89740 0.80792 1.90870 1.57575 1.54939 1.33148 1.22517 0.98610 0.83277 0.98177 1.22218 0.79832 1.02915 0.97578 0.91800 0.92894 0.92162 0.88995 0.92269 0.84060 0.85648 0.91795 0.89296 0.69851 0.71944 0.90999 0.83688 0.91618 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.90 11.84 21.84 0.26 -48.64 16 2 C 0.03 1.39 5.50 85.31 0.47 1.86 16 3 Si 1.00 37.60 29.56 68.60 2.03 39.62 16 4 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.28 -10.60 7.11 99.48 0.71 -9.90 16 6 H -0.24 -7.83 7.11 99.48 0.71 -7.12 16 7 C -0.56 -28.81 8.88 24.83 0.22 -28.59 16 8 H 0.11 4.50 5.63 -2.91 -0.02 4.48 16 9 C 0.54 29.39 7.61 86.36 0.66 30.05 16 10 O -0.64 -41.51 14.47 -4.29 -0.06 -41.57 16 11 N -0.65 -26.68 2.95 -822.23 -2.42 -29.11 16 12 C 0.11 4.21 6.58 86.41 0.57 4.78 16 13 C 0.11 3.45 6.59 86.41 0.57 4.02 16 14 N -0.61 -14.28 2.94 -817.18 -2.40 -16.68 16 15 C 0.51 10.62 7.70 87.65 0.67 11.29 16 16 O -0.59 -17.67 15.39 -3.02 -0.05 -17.71 16 17 C -0.13 -1.00 3.95 29.85 0.12 -0.88 16 18 C -0.10 -0.95 4.27 30.59 0.13 -0.82 16 19 C 0.11 0.54 3.67 44.37 0.16 0.70 16 20 H 0.18 -0.36 8.14 -2.38 -0.02 -0.38 16 21 N -0.70 -4.16 5.98 -459.60 -2.75 -6.91 16 22 C 0.70 9.48 9.00 179.44 1.61 11.09 16 23 O -0.59 -13.13 18.04 -3.83 -0.07 -13.20 16 24 N -0.68 -7.31 5.72 -440.67 -2.52 -9.82 16 25 C 0.53 6.16 8.17 87.89 0.72 6.88 16 26 O -0.49 -9.23 18.02 -2.89 -0.05 -9.29 16 27 C 0.10 1.81 6.53 86.57 0.57 2.38 16 28 C 0.10 2.72 6.52 86.56 0.56 3.28 16 29 H 0.27 14.69 8.29 -92.71 -0.77 13.92 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 31 H 0.06 2.70 7.02 -2.39 -0.02 2.68 16 32 H 0.09 2.86 6.99 -2.39 -0.02 2.84 16 33 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.14 0.10 7.90 -2.38 -0.02 0.08 16 35 H 0.13 0.30 7.06 -2.39 -0.02 0.29 16 36 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 37 H 0.09 1.14 8.10 -2.39 -0.02 1.13 16 38 H 0.45 0.75 8.44 -92.71 -0.78 -0.04 16 39 H 0.44 3.65 8.96 -92.70 -0.83 2.81 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.15 0.98 5.91 -2.38 -0.01 0.97 16 42 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.10 2.95 5.29 -2.38 -0.01 2.94 16 Total: -1.00 -92.34 359.61 -1.51 -93.85 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -0.51 Total: 13.40 kcal Atomic # 6 Polarization: 39.02 SS G_CDS: 7.03 Total: 46.05 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -9.84 Total: -111.17 kcal Atomic # 8 Polarization: -81.54 SS G_CDS: -0.23 Total: -81.77 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.62 kcal Total: -92.34 -1.51 -93.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137370042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.809 kcal (2) G-P(sol) polarization free energy of solvation -92.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds