Wall clock time and date at job start Tue Mar 31 2020 20:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00135 * 2 1 4 4 H 1.48496 * 109.47323 * 270.00418 * 3 2 1 5 5 H 1.48507 * 109.47231 * 30.00431 * 3 2 1 6 6 H 1.48504 * 109.47236 * 150.00057 * 3 2 1 7 7 C 1.37879 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99780 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.46821 * 180.02562 * 9 7 2 11 11 O 1.21277 * 120.00147 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99865 * 179.97438 * 10 9 7 13 13 C 1.46498 * 120.00184 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47126 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47186 * 180.02562 * 14 13 12 16 16 O 1.21291 * 119.99930 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00244 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00184 * 179.97438 * 17 15 14 19 19 H 1.09001 * 109.46927 * 34.99893 * 18 17 15 20 20 C 1.52999 * 109.47179 * 155.00075 * 18 17 15 21 21 C 1.50701 * 109.47187 * 294.99753 * 20 18 17 22 22 C 1.34673 * 126.58790 * 85.02189 * 21 20 18 23 23 N 1.34129 * 108.02137 * 179.97438 * 22 21 20 24 24 C 1.30497 * 109.25330 * 0.02562 * 23 22 21 25 25 N 1.35037 * 108.70319 * 359.76811 * 24 23 22 26 26 H 0.97008 * 126.40403 * 180.26411 * 25 24 23 27 27 C 1.50702 * 109.47272 * 275.00217 * 18 17 15 28 28 O 1.20822 * 119.99854 * 359.72166 * 27 18 17 29 29 O 1.34234 * 119.99997 * 180.02562 * 27 18 17 30 30 H 0.97001 * 119.99505 * 359.97438 * 1 2 3 31 31 H 1.08988 * 109.47183 * 60.00111 * 9 7 2 32 32 H 1.09006 * 109.46763 * 299.99842 * 9 7 2 33 33 H 0.97011 * 119.99890 * 359.97438 * 12 10 9 34 34 H 1.09002 * 109.46808 * 60.00009 * 13 12 10 35 35 H 1.08998 * 109.47428 * 299.99980 * 13 12 10 36 36 H 1.09002 * 109.47247 * 60.00306 * 14 13 12 37 37 H 1.09001 * 109.47167 * 299.99544 * 14 13 12 38 38 H 0.96998 * 120.00092 * 359.97438 * 17 15 14 39 39 H 1.08996 * 109.47574 * 55.00129 * 20 18 17 40 40 H 1.09001 * 109.46724 * 175.00381 * 20 18 17 41 41 H 1.08000 * 125.98851 * 359.97284 * 22 21 20 42 42 H 1.08002 * 125.64504 * 180.02562 * 24 23 22 43 43 H 0.96695 * 116.99910 * 179.72143 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4227 -3.4230 -0.0010 12 7 1.7811 -4.9152 0.0000 13 6 2.7330 -6.0288 -0.0006 14 6 1.9680 -7.3538 0.0008 15 6 2.9472 -8.4992 0.0009 16 8 4.1397 -8.2776 -0.0006 17 7 2.4980 -9.7699 0.0015 18 6 3.4500 -10.8834 0.0010 19 1 4.3264 -10.6124 0.5897 20 6 2.7881 -12.1205 0.6114 21 6 2.4798 -11.8604 2.0634 22 6 1.3830 -11.2527 2.5547 23 7 1.4908 -11.2190 3.8913 24 6 2.6131 -11.7822 4.2467 25 7 3.2583 -12.2005 3.1367 26 1 4.1142 -12.6559 3.1054 27 6 3.8694 -11.1851 -1.4147 28 8 3.4156 -10.5398 -2.3297 29 8 4.7427 -12.1747 -1.6595 30 1 -0.4849 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8902 32 1 0.6247 -2.5570 0.8898 33 1 0.8273 -5.0925 0.0007 34 1 3.3603 -5.9709 0.8889 35 1 3.3590 -5.9712 -0.8910 36 1 1.3404 -7.4119 -0.8885 37 1 1.3424 -7.4111 0.8916 38 1 1.5444 -9.9472 0.0023 39 1 1.8636 -12.3390 0.0771 40 1 3.4644 -12.9715 0.5304 41 1 0.5607 -10.8611 1.9743 42 1 2.9653 -11.8986 5.2611 43 1 4.9784 -12.3335 -2.5838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:39 Heat of formation + Delta-G solvation = -113.298406 kcal Electronic energy + Delta-G solvation = -28249.305516 eV Core-core repulsion = 23909.368310 eV Total energy + Delta-G solvation = -4339.937206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.57502 -41.06758 -39.73485 -38.49123 -36.68378 -36.10992 -34.56915 -33.21502 -32.86178 -32.35374 -30.80861 -29.23410 -28.45410 -25.52344 -24.44975 -22.89270 -22.08482 -21.68064 -21.38301 -20.66310 -19.67390 -18.62112 -18.55659 -17.42951 -17.32808 -16.58771 -16.28075 -16.01824 -15.78998 -15.69346 -15.26507 -14.90728 -14.87529 -14.40553 -14.27652 -14.22411 -13.86627 -13.71153 -13.38421 -13.26503 -13.07066 -12.56619 -12.50728 -12.05135 -11.97250 -11.74237 -11.57099 -11.21364 -11.01588 -10.72485 -10.53720 -10.49556 -10.44576 -10.21604 -9.90048 -9.72698 -9.21202 -8.89932 -8.58798 -8.43423 -8.34264 -6.00683 -3.99547 1.41165 1.74100 2.06595 2.47136 2.58925 2.72837 2.88448 3.39378 3.44196 3.52100 3.81107 3.91444 4.00227 4.05924 4.24915 4.38298 4.50677 4.57214 4.68233 4.78946 4.91360 4.94632 5.02412 5.05997 5.09478 5.37716 5.37958 5.63442 5.82096 6.00094 6.05679 6.09460 6.22524 6.48141 6.85289 6.98601 7.08964 7.24394 7.37759 7.39219 7.59880 7.86061 8.01584 8.11652 8.50755 9.11682 9.31551 9.65415 11.11822 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015445 B = 0.002043 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.470136 B =13700.950015 C =14867.429503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.514 3.486 11 O -0.543 6.543 12 N -0.751 5.751 13 C 0.136 3.864 14 C -0.150 4.150 15 C 0.530 3.470 16 O -0.527 6.527 17 N -0.711 5.711 18 C 0.165 3.835 19 H 0.126 0.874 20 C -0.043 4.043 21 C -0.033 4.033 22 C -0.007 4.007 23 N -0.491 5.491 24 C 0.192 3.808 25 N -0.565 5.565 26 H 0.420 0.580 27 C 0.464 3.536 28 O -0.495 6.495 29 O -0.518 6.518 30 H 0.261 0.739 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.395 0.605 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.409 0.591 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.168 0.832 42 H 0.209 0.791 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 -35.473 2.908 35.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.093 0.907 9 C -0.034 4.034 10 C 0.304 3.696 11 O -0.419 6.419 12 N -0.407 5.407 13 C 0.011 3.989 14 C -0.190 4.190 15 C 0.317 3.683 16 O -0.402 6.402 17 N -0.366 5.366 18 C 0.056 3.944 19 H 0.144 0.856 20 C -0.083 4.083 21 C -0.149 4.149 22 C -0.156 4.156 23 N -0.209 5.209 24 C -0.092 4.092 25 N -0.168 5.168 26 H 0.258 0.742 27 C 0.303 3.697 28 O -0.381 6.381 29 O -0.330 6.330 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.228 0.772 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.245 0.755 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.186 0.814 42 H 0.226 0.774 43 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 3.466 -34.364 3.601 34.726 hybrid contribution 0.618 -0.068 -1.221 1.370 sum 4.083 -34.433 2.380 34.755 Atomic orbital electron populations 1.69961 1.06020 1.26838 1.51367 1.25008 0.94917 0.99467 0.95288 0.86429 0.79866 0.82648 0.78142 1.20636 1.21299 1.19676 1.21188 0.94302 0.89168 1.49849 0.90699 1.19238 0.94138 0.90536 0.99463 1.22008 0.91124 0.83286 0.73230 1.90550 1.18093 1.84589 1.48652 1.46295 1.09335 1.06013 1.79009 1.20829 0.91678 0.83138 1.03227 1.21827 0.98676 0.93082 1.05426 1.20641 0.89916 0.83463 0.74241 1.90759 1.17033 1.84452 1.47955 1.45693 1.09701 1.04497 1.76663 1.20299 0.95911 0.88554 0.89618 0.85595 1.20190 1.03145 0.95963 0.88957 1.20830 0.95666 1.08905 0.89460 1.22118 0.98647 1.03815 0.90977 1.70348 1.17886 1.19630 1.13057 1.25068 0.90957 1.00150 0.92989 1.43295 1.20294 1.46363 1.06855 0.74167 1.23980 0.75915 0.76856 0.92958 1.90768 1.52831 1.48074 1.46400 1.84478 1.59316 1.52050 1.37121 0.92961 0.93441 0.93419 0.77158 0.91416 0.91406 0.87757 0.87747 0.75531 0.87968 0.87941 0.81432 0.77413 0.72731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.67 29.54 -169.99 -5.02 17.65 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -15.12 8.92 -34.44 -0.31 -15.42 16 8 H 0.07 2.34 6.75 -52.49 -0.35 1.99 16 9 C 0.01 0.14 5.46 -29.03 -0.16 -0.01 16 10 C 0.51 12.19 7.82 -10.99 -0.09 12.10 16 11 O -0.54 -15.03 15.46 5.56 0.09 -14.94 16 12 N -0.75 -13.18 5.56 -60.30 -0.33 -13.52 16 13 C 0.14 2.18 4.96 -4.04 -0.02 2.16 16 14 C -0.15 -1.56 5.81 -27.88 -0.16 -1.72 16 15 C 0.53 6.09 7.66 -10.99 -0.08 6.01 16 16 O -0.53 -8.38 15.65 5.55 0.09 -8.29 16 17 N -0.71 -5.27 4.09 -54.93 -0.22 -5.50 16 18 C 0.16 1.06 2.47 -69.08 -0.17 0.89 16 19 H 0.13 0.97 7.58 -51.93 -0.39 0.58 16 20 C -0.04 -0.14 5.28 -27.88 -0.15 -0.29 16 21 C -0.03 -0.17 6.29 -81.60 -0.51 -0.68 16 22 C -0.01 -0.05 11.40 -17.81 -0.20 -0.25 16 23 N -0.49 -4.52 11.25 -14.67 -0.17 -4.68 16 24 C 0.19 1.14 13.04 -90.38 -1.18 -0.04 16 25 N -0.56 -2.31 6.15 -10.30 -0.06 -2.38 16 26 H 0.42 0.44 8.96 -40.82 -0.37 0.07 16 27 C 0.46 3.73 7.66 36.01 0.28 4.00 16 28 O -0.50 -5.91 17.08 -18.75 -0.32 -6.23 16 29 O -0.52 -2.63 13.23 -39.27 -0.52 -3.15 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.05 1.24 8.14 -51.94 -0.42 0.81 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.40 5.53 8.47 -40.82 -0.35 5.19 16 34 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.41 1.85 8.43 -40.82 -0.34 1.51 16 39 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.10 0.17 7.99 -51.93 -0.42 -0.25 16 41 H 0.17 0.87 8.00 -52.49 -0.42 0.45 16 42 H 0.21 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.41 0.70 9.10 45.56 0.41 1.11 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -43.60 383.42 -7.55 -51.15 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.74 Total: 2.03 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -2.85 Total: 8.22 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.05 Total: -52.21 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.67 Total: -32.61 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -43.60 -7.55 -51.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.148 kcal (2) G-P(sol) polarization free energy of solvation -43.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds