Wall clock time and date at job start Tue Mar 31 2020 20:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00135 * 2 1 4 4 H 1.48496 * 109.47323 * 270.00418 * 3 2 1 5 5 H 1.48507 * 109.47231 * 30.00431 * 3 2 1 6 6 H 1.48504 * 109.47236 * 150.00057 * 3 2 1 7 7 C 1.37879 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99780 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.46821 * 180.02562 * 9 7 2 11 11 O 1.21277 * 120.00147 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99865 * 179.97438 * 10 9 7 13 13 C 1.46498 * 120.00184 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47126 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47186 * 180.02562 * 14 13 12 16 16 O 1.21291 * 119.99930 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00244 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00184 * 179.97438 * 17 15 14 19 19 H 1.09001 * 109.46927 * 34.99893 * 18 17 15 20 20 C 1.52999 * 109.47179 * 155.00075 * 18 17 15 21 21 C 1.50701 * 109.47187 * 294.99753 * 20 18 17 22 22 C 1.34673 * 126.58790 * 85.02189 * 21 20 18 23 23 N 1.34129 * 108.02137 * 179.97438 * 22 21 20 24 24 C 1.30497 * 109.25330 * 0.02562 * 23 22 21 25 25 N 1.35037 * 108.70319 * 359.76811 * 24 23 22 26 26 H 0.97008 * 126.40403 * 180.26411 * 25 24 23 27 27 C 1.50702 * 109.47272 * 275.00217 * 18 17 15 28 28 O 1.20822 * 119.99854 * 359.72166 * 27 18 17 29 29 O 1.34234 * 119.99997 * 180.02562 * 27 18 17 30 30 H 0.97001 * 119.99505 * 359.97438 * 1 2 3 31 31 H 1.08988 * 109.47183 * 60.00111 * 9 7 2 32 32 H 1.09006 * 109.46763 * 299.99842 * 9 7 2 33 33 H 0.97011 * 119.99890 * 359.97438 * 12 10 9 34 34 H 1.09002 * 109.46808 * 60.00009 * 13 12 10 35 35 H 1.08998 * 109.47428 * 299.99980 * 13 12 10 36 36 H 1.09002 * 109.47247 * 60.00306 * 14 13 12 37 37 H 1.09001 * 109.47167 * 299.99544 * 14 13 12 38 38 H 0.96998 * 120.00092 * 359.97438 * 17 15 14 39 39 H 1.08996 * 109.47574 * 55.00129 * 20 18 17 40 40 H 1.09001 * 109.46724 * 175.00381 * 20 18 17 41 41 H 1.08000 * 125.98851 * 359.97284 * 22 21 20 42 42 H 1.08002 * 125.64504 * 180.02562 * 24 23 22 43 43 H 0.96695 * 116.99910 * 179.72143 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4227 -3.4230 -0.0010 12 7 1.7811 -4.9152 0.0000 13 6 2.7330 -6.0288 -0.0006 14 6 1.9680 -7.3538 0.0008 15 6 2.9472 -8.4992 0.0009 16 8 4.1397 -8.2776 -0.0006 17 7 2.4980 -9.7699 0.0015 18 6 3.4500 -10.8834 0.0010 19 1 4.3264 -10.6124 0.5897 20 6 2.7881 -12.1205 0.6114 21 6 2.4798 -11.8604 2.0634 22 6 1.3830 -11.2527 2.5547 23 7 1.4908 -11.2190 3.8913 24 6 2.6131 -11.7822 4.2467 25 7 3.2583 -12.2005 3.1367 26 1 4.1142 -12.6559 3.1054 27 6 3.8694 -11.1851 -1.4147 28 8 3.4156 -10.5398 -2.3297 29 8 4.7427 -12.1747 -1.6595 30 1 -0.4849 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8902 32 1 0.6247 -2.5570 0.8898 33 1 0.8273 -5.0925 0.0007 34 1 3.3603 -5.9709 0.8889 35 1 3.3590 -5.9712 -0.8910 36 1 1.3404 -7.4119 -0.8885 37 1 1.3424 -7.4111 0.8916 38 1 1.5444 -9.9472 0.0023 39 1 1.8636 -12.3390 0.0771 40 1 3.4644 -12.9715 0.5304 41 1 0.5607 -10.8611 1.9743 42 1 2.9653 -11.8986 5.2611 43 1 4.9784 -12.3335 -2.5838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:39 Heat of formation + Delta-G solvation = -149.622153 kcal Electronic energy + Delta-G solvation = -28250.880632 eV Core-core repulsion = 23909.368310 eV Total energy + Delta-G solvation = -4341.512321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.98081 -41.73738 -40.70470 -40.18690 -37.28467 -36.79116 -36.09014 -35.08884 -33.75142 -32.97505 -32.08097 -30.64426 -29.54243 -26.32542 -25.81025 -24.44611 -22.53708 -22.39467 -21.84717 -21.63249 -21.21036 -19.21019 -18.99805 -18.56672 -18.17435 -18.01830 -17.71934 -17.07240 -16.90702 -16.65876 -16.52741 -16.11847 -15.87139 -15.66730 -15.32209 -14.89685 -14.69904 -14.52096 -14.42389 -14.23136 -14.15906 -13.79011 -13.64920 -13.24096 -12.93966 -12.88860 -12.76459 -12.63594 -12.57341 -12.40705 -12.04105 -11.92121 -11.44780 -11.21139 -10.93957 -10.89183 -10.62069 -10.55659 -10.44867 -10.02567 -9.31055 -8.24880 -6.31565 0.95832 1.18219 1.36197 1.40032 1.40986 1.53704 1.72397 1.88721 2.14111 2.27876 2.34296 2.41692 2.61381 3.10277 3.55377 3.61495 3.69104 3.90921 3.96385 4.06072 4.09406 4.26369 4.35879 4.40786 4.51012 4.63744 4.68928 4.77356 4.82777 4.94122 5.09676 5.13136 5.28940 5.33243 5.52536 5.54410 5.74059 5.83102 6.07098 6.32642 6.59069 6.72823 6.85281 6.88095 7.07869 7.19263 7.34320 7.52696 8.87201 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015445 B = 0.002043 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.470136 B =13700.950015 C =14867.429503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.277 1.277 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.010 3.990 10 C 0.515 3.485 11 O -0.590 6.590 12 N -0.723 5.723 13 C 0.139 3.861 14 C -0.138 4.138 15 C 0.527 3.473 16 O -0.580 6.580 17 N -0.693 5.693 18 C 0.163 3.837 19 H 0.115 0.885 20 C -0.030 4.030 21 C -0.028 4.028 22 C -0.033 4.033 23 N -0.542 5.542 24 C 0.186 3.814 25 N -0.555 5.555 26 H 0.435 0.565 27 C 0.470 3.530 28 O -0.539 6.539 29 O -0.506 6.506 30 H 0.268 0.732 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.417 0.583 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.425 0.575 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.179 0.821 42 H 0.234 0.766 43 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 -37.337 2.909 37.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.069 0.931 9 C -0.029 4.029 10 C 0.304 3.696 11 O -0.470 6.470 12 N -0.377 5.377 13 C 0.014 3.986 14 C -0.177 4.177 15 C 0.315 3.685 16 O -0.459 6.459 17 N -0.348 5.348 18 C 0.055 3.945 19 H 0.133 0.867 20 C -0.069 4.069 21 C -0.144 4.144 22 C -0.181 4.181 23 N -0.261 5.261 24 C -0.098 4.098 25 N -0.160 5.160 26 H 0.276 0.724 27 C 0.311 3.689 28 O -0.429 6.429 29 O -0.319 6.319 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.254 0.746 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.264 0.736 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.196 0.804 42 H 0.250 0.750 43 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 2.663 -36.343 3.597 36.617 hybrid contribution 0.864 0.383 -1.215 1.539 sum 3.526 -35.960 2.382 36.211 Atomic orbital electron populations 1.70018 1.06977 1.28098 1.51118 1.25762 0.95897 1.02620 0.94489 0.85477 0.78431 0.78719 0.78580 1.19665 1.19590 1.20201 1.21377 0.93595 0.91503 1.51288 0.93077 1.19081 0.94148 0.90501 0.99216 1.21592 0.89861 0.84835 0.73274 1.90528 1.19668 1.85602 1.51182 1.45888 1.10888 1.04535 1.76402 1.20795 0.91646 0.85149 1.00987 1.21747 0.98155 0.89430 1.08405 1.20776 0.89187 0.84851 0.73686 1.90746 1.19097 1.85342 1.50761 1.45517 1.10897 1.03594 1.74764 1.20439 0.95719 0.89312 0.88992 0.86745 1.20223 1.04381 0.94758 0.87506 1.21018 0.95084 1.07963 0.90317 1.22458 0.99986 1.04925 0.90746 1.70299 1.19822 1.21570 1.14425 1.25579 0.90462 0.99376 0.94389 1.43303 1.20667 1.45733 1.06256 0.72413 1.24159 0.75427 0.76460 0.92890 1.90760 1.54652 1.49727 1.47725 1.84440 1.58118 1.50683 1.38671 0.92324 0.93523 0.93471 0.74610 0.93584 0.93979 0.84913 0.84479 0.73592 0.85925 0.85635 0.80365 0.74959 0.70846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.58 13.29 21.45 0.28 -54.29 16 2 C 0.01 0.65 5.46 84.66 0.46 1.11 16 3 Si 0.96 46.52 29.54 68.60 2.03 48.55 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.54 -32.85 8.92 25.60 0.23 -32.63 16 8 H 0.05 3.31 6.75 -2.91 -0.02 3.29 16 9 C 0.01 0.53 5.46 29.10 0.16 0.69 16 10 C 0.52 24.89 7.82 87.66 0.69 25.57 16 11 O -0.59 -33.85 15.46 -3.02 -0.05 -33.89 16 12 N -0.72 -24.97 5.56 -463.07 -2.57 -27.54 16 13 C 0.14 4.45 4.96 86.38 0.43 4.88 16 14 C -0.14 -2.61 5.81 29.85 0.17 -2.43 16 15 C 0.53 11.65 7.66 87.66 0.67 12.33 16 16 O -0.58 -18.80 15.65 -3.06 -0.05 -18.85 16 17 N -0.69 -9.05 4.09 -446.09 -1.82 -10.87 16 18 C 0.16 1.81 2.47 44.25 0.11 1.92 16 19 H 0.11 1.64 7.58 -2.39 -0.02 1.62 16 20 C -0.03 -0.10 5.28 29.85 0.16 0.06 16 21 C -0.03 -0.22 6.29 40.95 0.26 0.04 16 22 C -0.03 -0.42 11.40 83.52 0.95 0.53 16 23 N -0.54 -9.53 11.25 -200.31 -2.25 -11.78 16 24 C 0.19 1.97 13.04 180.27 2.35 4.32 16 25 N -0.56 -3.45 6.15 -186.49 -1.15 -4.60 16 26 H 0.44 -0.10 8.96 -92.70 -0.83 -0.93 16 27 C 0.47 6.80 7.66 71.24 0.55 7.35 16 28 O -0.54 -12.38 17.08 21.98 0.38 -12.00 16 29 O -0.51 -4.03 13.23 -51.46 -0.68 -4.71 16 30 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.05 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.42 10.86 8.47 -92.70 -0.79 10.07 16 34 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 35 H 0.04 1.58 8.10 -2.39 -0.02 1.57 16 36 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.42 2.70 8.43 -92.71 -0.78 1.92 16 39 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.13 -0.07 7.99 -2.39 -0.02 -0.09 16 41 H 0.18 1.54 8.00 -2.91 -0.02 1.52 16 42 H 0.23 0.82 8.06 -2.91 -0.02 0.79 16 43 H 0.43 0.57 9.10 -74.06 -0.67 -0.11 16 Total: -1.00 -98.20 383.42 -0.67 -98.87 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -1.96 Total: 7.41 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 7.18 Total: 23.73 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -7.51 Total: -109.09 kcal Atomic # 8 Polarization: -69.06 SS G_CDS: -0.40 Total: -69.46 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -98.20 -0.67 -98.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.756 kcal (2) G-P(sol) polarization free energy of solvation -98.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds