Wall clock time and date at job start Tue Mar 31 2020 20:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38267 * 119.99829 * 2 1 4 4 C 1.38212 * 119.99782 * 180.02562 * 3 2 1 5 5 C 1.38250 * 120.00217 * 359.76538 * 4 3 2 6 6 C 1.38221 * 119.99739 * 0.46694 * 5 4 3 7 7 C 1.50703 * 119.99662 * 179.78641 * 6 5 4 8 8 N 1.46499 * 109.47138 * 269.72500 * 7 6 5 9 9 C 1.34777 * 119.99665 * 180.28062 * 8 7 6 10 10 O 1.21533 * 120.00302 * 359.72068 * 9 8 7 11 11 C 1.47963 * 119.99543 * 179.72368 * 9 8 7 12 12 C 1.39609 * 119.99828 * 359.72672 * 11 9 8 13 13 C 1.37752 * 120.00798 * 179.72457 * 12 11 9 14 14 C 1.39665 * 119.99632 * 0.54534 * 13 12 11 15 15 C 1.47841 * 120.01105 * 179.70232 * 14 13 12 16 16 O 1.21583 * 120.00332 * 180.02562 * 15 14 13 17 17 N 1.34774 * 119.99812 * 0.02562 * 15 14 13 18 18 C 1.36730 * 120.00091 * 179.97438 * 17 15 14 19 19 H 1.08004 * 120.00145 * 359.97438 * 18 17 15 20 20 C 1.39155 * 120.00070 * 180.02562 * 18 17 15 21 21 N 1.31289 * 119.99972 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99688 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47309 * 59.99940 * 22 20 18 24 24 H 1.48504 * 109.47056 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47566 * 299.99727 * 22 20 18 26 26 C 1.39675 * 119.98404 * 359.72497 * 14 13 12 27 27 C 1.37754 * 119.99108 * 0.02562 * 26 14 13 28 28 C 1.38205 * 120.00164 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47185 * 270.02569 * 1 2 3 30 30 H 1.08999 * 109.47127 * 30.02088 * 1 2 3 31 31 H 1.08999 * 109.47458 * 150.02433 * 1 2 3 32 32 H 1.08003 * 119.99709 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.99552 * 179.97438 * 4 3 2 34 34 H 1.07997 * 120.00416 * 180.25157 * 5 4 3 35 35 H 1.09009 * 109.46601 * 149.72402 * 7 6 5 36 36 H 1.08998 * 109.47035 * 29.72910 * 7 6 5 37 37 H 0.97001 * 119.99790 * 359.97438 * 8 7 6 38 38 H 1.08004 * 119.99719 * 359.97260 * 12 11 9 39 39 H 1.08002 * 120.00513 * 180.27367 * 13 12 11 40 40 H 0.97000 * 120.00531 * 0.02562 * 17 15 14 41 41 H 0.97000 * 119.99532 * 180.02562 * 21 20 18 42 42 H 1.07996 * 120.00530 * 179.97438 * 26 14 13 43 43 H 1.08001 * 119.99312 * 179.97438 * 27 26 14 44 44 H 1.07999 * 120.00237 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0002 0.0038 6 6 3.5806 -1.1968 -0.0010 7 6 4.3342 -2.5019 -0.0011 8 7 4.5774 -2.9253 -1.3824 9 6 5.2349 -4.0757 -1.6287 10 8 5.6304 -4.7594 -0.7050 11 6 5.4751 -4.5064 -3.0237 12 6 5.0158 -3.7238 -4.0847 13 6 5.2443 -4.1217 -5.3836 14 6 5.9257 -5.3138 -5.6391 15 6 6.1653 -5.7444 -7.0329 16 8 6.7581 -6.7824 -7.2552 17 7 5.7267 -4.9862 -8.0573 18 6 5.9488 -5.3841 -9.3464 19 1 6.4761 -6.3058 -9.5439 20 6 5.4964 -4.6011 -10.4040 21 7 4.8559 -3.4804 -10.1640 22 14 5.8005 -5.1444 -12.1651 23 1 5.1574 -6.4632 -12.3944 24 1 5.2234 -4.1439 -13.0985 25 1 7.2620 -5.2584 -12.4028 26 6 6.3802 -6.0993 -4.5774 27 6 6.1559 -5.6984 -3.2787 28 6 2.1980 -1.1969 0.0005 29 1 -0.3634 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 1.6582 2.1327 -0.0004 33 1 4.1203 2.1328 -0.0010 34 1 5.3516 0.0002 0.0075 35 1 3.7454 -3.2614 0.5134 36 1 5.2869 -2.3714 0.5120 37 1 4.2613 -2.3798 -2.1196 38 1 4.4846 -2.8044 -3.8871 39 1 4.8928 -3.5140 -6.2043 40 1 5.2541 -4.1579 -7.8801 41 1 4.5402 -2.9348 -10.9013 42 1 6.9067 -7.0214 -4.7746 43 1 6.5070 -6.3060 -2.4578 44 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143315958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:10 Heat of formation + Delta-G solvation = -50.891206 kcal Electronic energy + Delta-G solvation = -26709.981481 eV Core-core repulsion = 22783.599718 eV Total energy + Delta-G solvation = -3926.381763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.46649 -40.64233 -40.11622 -38.68249 -36.24673 -36.16890 -33.76034 -33.60167 -32.77148 -31.97405 -31.66592 -28.07464 -27.65667 -26.99661 -25.06544 -23.51168 -22.99765 -22.20925 -21.66504 -21.04044 -20.26144 -19.16458 -18.17200 -17.47670 -17.24597 -16.80376 -16.73882 -16.11637 -16.02262 -15.91385 -15.68127 -15.55150 -15.36269 -15.17148 -14.61660 -14.52204 -14.44030 -14.10472 -13.84786 -13.76360 -13.62577 -13.37052 -13.35526 -12.96502 -12.92632 -12.84995 -12.55495 -12.14807 -12.07963 -11.96397 -11.88495 -11.62490 -11.23338 -10.57074 -10.32754 -10.17604 -10.07392 -9.92659 -9.79401 -9.54890 -8.60029 -6.02750 -0.53667 0.28532 0.32651 0.46924 1.33660 1.41697 1.52487 1.56844 2.10421 2.21734 2.24575 2.83460 2.88444 3.01141 3.25568 3.57106 3.65015 3.77569 3.88183 3.90385 4.05129 4.17248 4.25861 4.29405 4.36506 4.40680 4.47910 4.59434 4.63111 4.69998 4.83166 4.84914 4.93498 4.99284 5.14218 5.14439 5.22867 5.28111 5.31546 5.32005 5.39054 5.55006 5.62685 5.69104 5.73833 5.89256 6.08919 6.41675 6.45745 6.98384 7.07903 7.37734 7.95564 8.56512 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.002160 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.273261 B =12958.912449 C =14655.554945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.119 4.119 4 C -0.123 4.123 5 C -0.114 4.114 6 C -0.111 4.111 7 C 0.165 3.835 8 N -0.708 5.708 9 C 0.567 3.433 10 O -0.571 6.571 11 C -0.135 4.135 12 C -0.068 4.068 13 C -0.108 4.108 14 C -0.089 4.089 15 C 0.453 3.547 16 O -0.637 6.637 17 N -0.543 5.543 18 C -0.339 4.339 19 H 0.085 0.915 20 C -0.005 4.005 21 N -0.903 5.903 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.265 1.265 25 H -0.270 1.270 26 C -0.092 4.092 27 C -0.062 4.062 28 C -0.111 4.111 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.413 0.587 38 H 0.167 0.833 39 H 0.139 0.861 40 H 0.400 0.600 41 H 0.285 0.715 42 H 0.129 0.871 43 H 0.146 0.854 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.985 14.182 20.991 26.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.137 4.137 4 C -0.141 4.141 5 C -0.133 4.133 6 C -0.111 4.111 7 C 0.042 3.958 8 N -0.360 5.360 9 C 0.355 3.645 10 O -0.452 6.452 11 C -0.139 4.139 12 C -0.087 4.087 13 C -0.127 4.127 14 C -0.093 4.093 15 C 0.243 3.757 16 O -0.527 6.527 17 N -0.177 5.177 18 C -0.468 4.468 19 H 0.103 0.897 20 C -0.207 4.207 21 N -0.542 5.542 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.189 1.189 25 H -0.195 1.195 26 C -0.111 4.111 27 C -0.081 4.081 28 C -0.129 4.129 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.251 0.749 38 H 0.184 0.816 39 H 0.157 0.843 40 H 0.236 0.764 41 H 0.095 0.905 42 H 0.147 0.853 43 H 0.163 0.837 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.441 13.227 21.348 26.494 hybrid contribution -0.020 0.138 -1.253 1.260 sum -8.461 13.365 20.095 25.574 Atomic orbital electron populations 1.20845 0.89837 1.03540 1.03018 1.20215 0.97284 0.93009 0.99224 1.21414 0.94577 0.98301 0.99454 1.21422 0.94584 0.98615 0.99461 1.21278 1.00627 0.91952 0.99415 1.19761 0.93900 0.94065 1.03374 1.20203 0.99829 0.93142 0.82617 1.45887 1.57491 1.22976 1.09631 1.18247 0.77338 0.80861 0.88058 1.90746 1.52677 1.55315 1.46440 1.20023 1.03584 0.97459 0.92821 1.21397 0.97338 0.99550 0.90368 1.21423 0.97925 0.95052 0.98326 1.20306 0.99624 0.96633 0.92743 1.18512 0.85431 0.85978 0.85780 1.90556 1.48793 1.27516 1.85828 1.41857 1.48552 1.22019 1.05266 1.19780 1.36396 1.08211 0.82461 0.89748 1.26185 0.95211 0.95065 1.04286 1.69581 1.36065 1.13037 1.35496 0.84916 0.78911 0.78347 0.75779 1.19505 1.18941 1.19501 1.21170 0.98877 0.99768 0.91309 1.21215 0.95624 0.95231 0.96051 1.21143 0.93383 0.98480 0.99916 0.90412 0.90593 0.91220 0.84310 0.84113 0.85067 0.90724 0.90574 0.74927 0.81578 0.84326 0.76385 0.90505 0.85349 0.83675 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.01 71.24 0.71 -0.30 16 2 C -0.10 -1.22 5.88 -19.87 -0.12 -1.33 16 3 C -0.12 -1.38 9.70 22.27 0.22 -1.16 16 4 C -0.12 -1.44 10.05 22.27 0.22 -1.21 16 5 C -0.11 -1.50 9.70 22.27 0.22 -1.29 16 6 C -0.11 -1.57 5.25 -19.86 -0.10 -1.68 16 7 C 0.16 2.71 5.80 85.63 0.50 3.20 16 8 N -0.71 -12.80 5.50 -469.59 -2.58 -15.38 16 9 C 0.57 14.34 7.78 86.82 0.68 15.01 16 10 O -0.57 -18.19 16.33 -3.82 -0.06 -18.25 16 11 C -0.14 -3.59 5.88 -20.04 -0.12 -3.71 16 12 C -0.07 -1.63 9.52 22.49 0.21 -1.42 16 13 C -0.11 -3.37 9.53 22.50 0.21 -3.16 16 14 C -0.09 -3.52 5.88 -20.04 -0.12 -3.64 16 15 C 0.45 22.90 7.72 86.79 0.67 23.57 16 16 O -0.64 -37.00 15.91 -3.98 -0.06 -37.06 16 17 N -0.54 -28.05 5.22 -309.65 -1.62 -29.66 16 18 C -0.34 -18.97 9.68 84.15 0.81 -18.16 16 19 H 0.08 5.03 7.15 -2.91 -0.02 5.01 16 20 C -0.01 -0.26 5.50 84.99 0.47 0.21 16 21 N -0.90 -46.23 13.04 21.70 0.28 -45.94 16 22 Si 1.00 41.07 29.55 68.60 2.03 43.10 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 26 C -0.09 -3.28 9.58 22.50 0.22 -3.06 16 27 C -0.06 -1.88 9.58 22.49 0.22 -1.66 16 28 C -0.11 -1.52 9.36 22.27 0.21 -1.31 16 29 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.53 8.09 -2.39 -0.02 0.51 16 31 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 32 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 33 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.07 1.29 8.09 -2.38 -0.02 1.27 16 36 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 37 H 0.41 5.75 6.48 -92.71 -0.60 5.15 16 38 H 0.17 2.53 6.39 -2.91 -0.02 2.51 16 39 H 0.14 4.18 6.39 -2.91 -0.02 4.16 16 40 H 0.40 19.08 5.91 -92.71 -0.55 18.53 16 41 H 0.29 13.51 8.31 -92.71 -0.77 12.74 16 42 H 0.13 4.79 7.64 -2.91 -0.02 4.77 16 43 H 0.15 4.07 7.64 -2.91 -0.02 4.05 16 44 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -71.14 381.89 3.00 -68.15 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.09 Total: 36.15 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 5.10 Total: -1.10 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -3.92 Total: -90.99 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -0.13 Total: -55.31 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -71.14 3.00 -68.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143315958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.254 kcal (2) G-P(sol) polarization free energy of solvation -71.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds