Wall clock time and date at job start Tue Mar 31 2020 21:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38357 * 119.85046 * 2 1 4 4 C 1.37956 * 120.14172 * 179.97438 * 3 2 1 5 5 C 1.39579 * 119.85454 * 0.27320 * 4 3 2 6 6 C 1.47849 * 120.14580 * 179.72135 * 5 4 3 7 7 O 1.21551 * 119.99899 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99604 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99633 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47210 * 179.97438 * 9 8 6 11 11 O 1.21285 * 119.99467 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00047 * 179.97438 * 10 9 8 13 13 C 1.39938 * 119.99929 * 174.89303 * 12 10 9 14 14 C 1.39291 * 119.94327 * 145.79007 * 13 12 10 15 15 C 1.38490 * 120.42448 * 180.02562 * 14 13 12 16 16 C 1.37687 * 120.32138 * 359.97130 * 15 14 13 17 17 C 1.40732 * 119.88439 * 0.02769 * 16 15 14 18 18 C 1.41411 * 120.20585 * 179.97438 * 17 16 15 19 19 H 1.08008 * 120.00025 * 205.17507 * 18 17 16 20 20 C 1.39926 * 120.00277 * 25.17953 * 18 17 16 21 21 N 1.30829 * 119.99961 * 16.78984 * 20 18 17 22 22 Si 1.86798 * 120.00119 * 196.79094 * 20 18 17 23 23 H 1.48499 * 109.47113 * 89.99936 * 22 20 18 24 24 H 1.48503 * 109.47165 * 209.99539 * 22 20 18 25 25 H 1.48497 * 109.47396 * 330.00052 * 22 20 18 26 26 C 1.38239 * 119.94514 * 325.51533 * 13 12 10 27 27 C 1.39583 * 119.70908 * 359.47704 * 5 4 3 28 28 C 1.37959 * 119.84982 * 0.50385 * 27 5 4 29 29 H 1.08999 * 109.47145 * 89.99714 * 1 2 3 30 30 H 1.08998 * 109.46422 * 210.00392 * 1 2 3 31 31 H 1.08997 * 109.46514 * 329.99607 * 1 2 3 32 32 H 1.07995 * 119.93024 * 359.95667 * 3 2 1 33 33 H 1.08002 * 120.07624 * 180.02562 * 4 3 2 34 34 H 0.96995 * 120.00398 * 0.02562 * 8 6 5 35 35 H 1.08998 * 109.47456 * 300.00495 * 9 8 6 36 36 H 1.09005 * 109.46892 * 60.00765 * 9 8 6 37 37 H 0.97001 * 120.00275 * 354.90337 * 12 10 9 38 38 H 1.07998 * 119.78792 * 359.97438 * 14 13 12 39 39 H 1.07999 * 119.83909 * 180.02562 * 15 14 13 40 40 H 1.08002 * 120.05411 * 180.02562 * 16 15 14 41 41 H 0.97004 * 120.00310 * 179.97438 * 21 20 18 42 42 H 1.07995 * 120.16493 * 359.97438 * 26 13 12 43 43 H 1.07996 * 120.07050 * 180.23248 * 27 5 4 44 44 H 1.08001 * 119.92430 * 179.74959 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2070 0.0005 5 6 4.2763 0.0000 -0.0047 6 6 5.7548 0.0000 -0.0104 7 8 6.3625 1.0527 -0.0100 8 7 6.4286 -1.1672 -0.0149 9 6 7.8936 -1.1672 -0.0211 10 6 8.3959 -2.5880 -0.0246 11 8 7.6077 -3.5098 -0.0227 12 7 9.7210 -2.8342 -0.0310 13 6 10.1888 -4.1489 0.0736 14 6 11.3475 -4.5301 -0.5988 15 6 11.8192 -5.8287 -0.5027 16 6 11.1473 -6.7576 0.2598 17 6 9.9752 -6.3868 0.9449 18 6 9.2794 -7.3355 1.7295 19 1 8.2227 -7.2116 1.9156 20 6 9.9599 -8.4346 2.2650 21 7 11.2666 -8.4270 2.3294 22 14 9.0027 -9.9128 2.8879 23 1 8.8151 -10.8837 1.7801 24 1 9.7557 -10.5608 3.9918 25 1 7.6764 -9.4692 3.3871 26 6 9.5033 -5.0657 0.8487 27 6 3.5753 -1.2070 0.0006 28 6 2.1958 -1.2000 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3632 0.8900 0.5139 32 1 1.6522 2.1332 -0.0007 33 1 4.1118 2.1444 0.0010 34 1 5.9436 -2.0072 -0.0148 35 1 8.2532 -0.6520 -0.9118 36 1 8.2606 -0.6547 0.8682 37 1 10.3504 -2.1002 -0.1079 38 1 11.8812 -3.8086 -1.1997 39 1 12.7188 -6.1139 -1.0278 40 1 11.5191 -7.7690 0.3321 41 1 11.7384 -9.1888 2.7009 42 1 8.6075 -4.7698 1.3743 43 1 4.1118 -2.1443 0.0004 44 1 1.6522 -2.1332 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144878278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:03 Heat of formation + Delta-G solvation = -30.044856 kcal Electronic energy + Delta-G solvation = -26923.317438 eV Core-core repulsion = 22997.839641 eV Total energy + Delta-G solvation = -3925.477798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.57463 -39.77242 -38.60946 -37.27786 -34.82368 -34.40667 -33.21982 -33.08597 -31.28452 -29.87789 -29.41670 -27.97286 -26.54069 -25.33616 -22.96973 -22.79708 -21.63260 -20.92064 -20.48586 -19.82231 -18.55799 -17.77049 -16.54126 -16.34533 -15.92289 -15.62280 -15.53892 -15.27533 -14.97799 -14.78441 -14.70723 -14.52510 -14.05570 -13.89076 -13.69739 -13.30946 -13.11734 -12.88448 -12.69823 -12.60305 -12.21472 -12.10148 -11.92360 -11.70877 -11.31387 -11.25801 -11.17388 -10.98081 -10.49887 -10.28924 -10.18652 -9.74379 -9.55290 -9.36932 -9.29141 -9.14641 -9.08282 -8.97270 -7.50735 -7.00292 -6.75838 -4.38383 0.56053 1.08092 2.41394 2.63765 2.78175 2.78741 3.07053 3.11462 3.14561 3.26780 3.58458 3.59781 3.93343 4.38665 4.46068 4.58902 4.60282 4.70404 4.81380 4.94217 5.05809 5.20339 5.22279 5.24878 5.33905 5.39895 5.66321 5.66683 5.70795 5.99330 6.07150 6.11612 6.19537 6.21347 6.33550 6.58603 6.62873 6.93397 6.97671 7.01305 7.20402 7.33012 7.46090 7.64943 7.90225 7.98795 8.03326 8.08671 8.16517 8.48940 8.63769 8.88791 8.93054 10.17762 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012864 B = 0.002257 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.040324 B =12402.607560 C =14299.468701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.062 4.062 3 C -0.132 4.132 4 C -0.055 4.055 5 C -0.140 4.140 6 C 0.562 3.438 7 O -0.542 6.542 8 N -0.711 5.711 9 C 0.101 3.899 10 C 0.500 3.500 11 O -0.517 6.517 12 N -0.660 5.660 13 C 0.148 3.852 14 C -0.259 4.259 15 C -0.092 4.092 16 C -0.170 4.170 17 C 0.119 3.881 18 C -0.458 4.458 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.794 5.794 22 Si 0.909 3.091 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.209 4.209 27 C -0.078 4.078 28 C -0.128 4.128 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.413 0.587 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.402 0.598 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.280 0.720 42 H 0.105 0.895 43 H 0.131 0.869 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.219 14.522 -3.885 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.062 4.062 3 C -0.150 4.150 4 C -0.074 4.074 5 C -0.143 4.143 6 C 0.350 3.650 7 O -0.421 6.421 8 N -0.367 5.367 9 C -0.026 4.026 10 C 0.285 3.715 11 O -0.392 6.392 12 N -0.304 5.304 13 C 0.057 3.943 14 C -0.281 4.281 15 C -0.111 4.111 16 C -0.189 4.189 17 C 0.116 3.884 18 C -0.487 4.487 19 H 0.097 0.903 20 C -0.142 4.142 21 N -0.420 5.420 22 Si 0.734 3.266 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.231 4.231 27 C -0.097 4.097 28 C -0.146 4.146 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.252 0.748 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.236 0.764 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.137 0.863 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.149 0.851 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.153 14.468 -3.766 20.586 hybrid contribution -0.028 -0.748 0.283 0.801 sum -14.181 13.719 -3.483 20.036 Atomic orbital electron populations 1.20875 0.90842 1.03167 1.02686 1.20186 0.96418 0.93188 0.96427 1.21027 0.93806 0.97847 1.02324 1.21255 0.93840 0.97650 0.94639 1.19861 0.92410 0.94627 1.07407 1.18239 0.87281 0.83354 0.76155 1.90764 1.69881 1.31133 1.50285 1.45623 1.06272 1.09756 1.75003 1.21082 0.81698 0.94920 1.04921 1.20415 0.83179 0.90655 0.77205 1.90745 1.54869 1.45454 1.48128 1.43318 1.06358 1.08742 1.71987 1.17419 0.95944 0.82492 0.98481 1.20047 1.01014 0.97324 1.09668 1.20476 0.98406 0.93118 0.99114 1.21368 0.98614 0.99349 0.99617 1.17493 0.91169 0.90369 0.89389 1.19582 0.96816 1.04979 1.27347 0.90343 1.25909 0.94852 0.99330 0.94137 1.69821 1.08275 1.29965 1.33915 0.86292 0.80610 0.80893 0.78823 1.19250 1.20330 1.18592 1.20948 1.03585 0.93420 1.05109 1.21435 0.94695 0.97313 0.96240 1.21027 0.93848 0.97985 1.01737 0.90728 0.91153 0.91248 0.85348 0.84585 0.74764 0.88279 0.88107 0.76373 0.89167 0.88948 0.86259 0.90880 0.87663 0.85104 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.01 36.01 0.36 -0.27 16 2 C -0.06 -0.49 5.89 -104.53 -0.62 -1.11 16 3 C -0.13 -1.10 9.68 -39.64 -0.38 -1.48 16 4 C -0.05 -0.56 9.60 -39.18 -0.38 -0.94 16 5 C -0.14 -1.61 5.87 -104.96 -0.62 -2.22 16 6 C 0.56 7.51 7.77 -12.33 -0.10 7.42 16 7 O -0.54 -8.54 16.35 5.32 0.09 -8.46 16 8 N -0.71 -9.15 5.48 -62.42 -0.34 -9.49 16 9 C 0.10 1.27 6.16 -5.19 -0.03 1.24 16 10 C 0.50 8.17 7.63 -10.99 -0.08 8.08 16 11 O -0.52 -10.39 13.42 5.55 0.07 -10.31 16 12 N -0.66 -11.02 5.34 -9.91 -0.05 -11.07 16 13 C 0.15 3.23 6.25 -83.77 -0.52 2.71 16 14 C -0.26 -5.55 9.97 -39.10 -0.39 -5.94 16 15 C -0.09 -2.11 10.02 -39.69 -0.40 -2.51 16 16 C -0.17 -4.38 8.69 -38.84 -0.34 -4.72 16 17 C 0.12 3.20 5.57 -106.85 -0.59 2.61 16 18 C -0.46 -12.32 9.05 -37.74 -0.34 -12.66 16 19 H 0.08 2.08 7.90 -52.48 -0.41 1.66 16 20 C 0.08 1.89 5.16 -17.35 -0.09 1.81 16 21 N -0.79 -20.41 10.94 55.55 0.61 -19.80 16 22 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 26 C -0.21 -5.26 8.39 -38.68 -0.32 -5.58 16 27 C -0.08 -0.79 9.54 -39.18 -0.37 -1.16 16 28 C -0.13 -1.11 9.68 -39.64 -0.38 -1.49 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.14 1.35 7.65 -52.49 -0.40 0.95 16 34 H 0.41 5.24 5.47 -40.82 -0.22 5.02 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.40 5.08 8.82 -40.82 -0.36 4.72 16 38 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 41 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 42 H 0.11 2.70 6.49 -52.49 -0.34 2.35 16 43 H 0.13 1.22 6.41 -52.49 -0.34 0.88 16 44 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -32.02 377.36 -9.90 -41.93 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -5.33 Total: 13.97 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -5.60 Total: -16.22 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.21 Total: -40.36 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.16 Total: -18.77 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.02 -9.90 -41.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144878278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.881 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds