Wall clock time and date at job start Tue Mar 31 2020 21:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38357 * 119.85046 * 2 1 4 4 C 1.37956 * 120.14172 * 179.97438 * 3 2 1 5 5 C 1.39579 * 119.85454 * 0.27320 * 4 3 2 6 6 C 1.47849 * 120.14580 * 179.72135 * 5 4 3 7 7 O 1.21551 * 119.99899 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99604 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99633 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47210 * 179.97438 * 9 8 6 11 11 O 1.21285 * 119.99467 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00047 * 179.97438 * 10 9 8 13 13 C 1.39938 * 119.99929 * 174.89303 * 12 10 9 14 14 C 1.39291 * 119.94327 * 145.79007 * 13 12 10 15 15 C 1.38490 * 120.42448 * 180.02562 * 14 13 12 16 16 C 1.37687 * 120.32138 * 359.97130 * 15 14 13 17 17 C 1.40732 * 119.88439 * 0.02769 * 16 15 14 18 18 C 1.41411 * 120.20585 * 179.97438 * 17 16 15 19 19 H 1.08008 * 120.00025 * 205.17507 * 18 17 16 20 20 C 1.39926 * 120.00277 * 25.17953 * 18 17 16 21 21 N 1.30829 * 119.99961 * 16.78984 * 20 18 17 22 22 Si 1.86798 * 120.00119 * 196.79094 * 20 18 17 23 23 H 1.48499 * 109.47113 * 89.99936 * 22 20 18 24 24 H 1.48503 * 109.47165 * 209.99539 * 22 20 18 25 25 H 1.48497 * 109.47396 * 330.00052 * 22 20 18 26 26 C 1.38239 * 119.94514 * 325.51533 * 13 12 10 27 27 C 1.39583 * 119.70908 * 359.47704 * 5 4 3 28 28 C 1.37959 * 119.84982 * 0.50385 * 27 5 4 29 29 H 1.08999 * 109.47145 * 89.99714 * 1 2 3 30 30 H 1.08998 * 109.46422 * 210.00392 * 1 2 3 31 31 H 1.08997 * 109.46514 * 329.99607 * 1 2 3 32 32 H 1.07995 * 119.93024 * 359.95667 * 3 2 1 33 33 H 1.08002 * 120.07624 * 180.02562 * 4 3 2 34 34 H 0.96995 * 120.00398 * 0.02562 * 8 6 5 35 35 H 1.08998 * 109.47456 * 300.00495 * 9 8 6 36 36 H 1.09005 * 109.46892 * 60.00765 * 9 8 6 37 37 H 0.97001 * 120.00275 * 354.90337 * 12 10 9 38 38 H 1.07998 * 119.78792 * 359.97438 * 14 13 12 39 39 H 1.07999 * 119.83909 * 180.02562 * 15 14 13 40 40 H 1.08002 * 120.05411 * 180.02562 * 16 15 14 41 41 H 0.97004 * 120.00310 * 179.97438 * 21 20 18 42 42 H 1.07995 * 120.16493 * 359.97438 * 26 13 12 43 43 H 1.07996 * 120.07050 * 180.23248 * 27 5 4 44 44 H 1.08001 * 119.92430 * 179.74959 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2070 0.0005 5 6 4.2763 0.0000 -0.0047 6 6 5.7548 0.0000 -0.0104 7 8 6.3625 1.0527 -0.0100 8 7 6.4286 -1.1672 -0.0149 9 6 7.8936 -1.1672 -0.0211 10 6 8.3959 -2.5880 -0.0246 11 8 7.6077 -3.5098 -0.0227 12 7 9.7210 -2.8342 -0.0310 13 6 10.1888 -4.1489 0.0736 14 6 11.3475 -4.5301 -0.5988 15 6 11.8192 -5.8287 -0.5027 16 6 11.1473 -6.7576 0.2598 17 6 9.9752 -6.3868 0.9449 18 6 9.2794 -7.3355 1.7295 19 1 8.2227 -7.2116 1.9156 20 6 9.9599 -8.4346 2.2650 21 7 11.2666 -8.4270 2.3294 22 14 9.0027 -9.9128 2.8879 23 1 8.8151 -10.8837 1.7801 24 1 9.7557 -10.5608 3.9918 25 1 7.6764 -9.4692 3.3871 26 6 9.5033 -5.0657 0.8487 27 6 3.5753 -1.2070 0.0006 28 6 2.1958 -1.2000 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3632 0.8900 0.5139 32 1 1.6522 2.1332 -0.0007 33 1 4.1118 2.1444 0.0010 34 1 5.9436 -2.0072 -0.0148 35 1 8.2532 -0.6520 -0.9118 36 1 8.2606 -0.6547 0.8682 37 1 10.3504 -2.1002 -0.1079 38 1 11.8812 -3.8086 -1.1997 39 1 12.7188 -6.1139 -1.0278 40 1 11.5191 -7.7690 0.3321 41 1 11.7384 -9.1888 2.7009 42 1 8.6075 -4.7698 1.3743 43 1 4.1118 -2.1443 0.0004 44 1 1.6522 -2.1332 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144878278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:02 Heat of formation + Delta-G solvation = -49.417725 kcal Electronic energy + Delta-G solvation = -26924.157509 eV Core-core repulsion = 22997.839641 eV Total energy + Delta-G solvation = -3926.317868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.69964 -40.98687 -39.54485 -38.96738 -36.35180 -35.67190 -34.89119 -33.85920 -32.00283 -31.76842 -30.78780 -29.09363 -27.56781 -27.21425 -23.84641 -23.67293 -23.05049 -22.68587 -21.46646 -21.26823 -19.75643 -19.35993 -17.74409 -17.68528 -17.24794 -17.00319 -16.77034 -16.46037 -16.23433 -15.93734 -15.87585 -15.76852 -15.06888 -14.86860 -14.64258 -14.57685 -14.52274 -14.13034 -14.05479 -13.73131 -13.52547 -13.03108 -13.02052 -12.93490 -12.84428 -12.79034 -12.58454 -12.19341 -12.01848 -11.96893 -11.54863 -11.23192 -11.22417 -10.95210 -10.76805 -10.40542 -10.00025 -9.69155 -9.41260 -8.79147 -8.62397 -6.37904 -0.21587 0.37786 0.79244 0.98045 1.36333 1.46366 1.49546 1.63395 1.69895 1.74480 2.20161 2.35142 2.72378 2.81928 3.46954 3.63967 3.73849 3.81470 3.96655 4.01329 4.24123 4.25882 4.36281 4.40485 4.45765 4.62048 4.73519 4.79374 4.86004 4.98395 5.04505 5.07250 5.08424 5.10304 5.21375 5.21923 5.30366 5.31700 5.35246 5.57356 5.71349 5.82940 5.92191 6.06838 6.09067 6.29886 6.32125 6.50861 6.66820 6.92273 6.97913 6.99130 7.16681 8.32281 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012864 B = 0.002257 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.040324 B =12402.607560 C =14299.468701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.058 4.058 3 C -0.132 4.132 4 C -0.065 4.065 5 C -0.164 4.164 6 C 0.563 3.437 7 O -0.571 6.571 8 N -0.713 5.713 9 C 0.112 3.888 10 C 0.502 3.498 11 O -0.556 6.556 12 N -0.650 5.650 13 C 0.156 3.844 14 C -0.249 4.249 15 C -0.092 4.092 16 C -0.197 4.197 17 C 0.087 3.913 18 C -0.500 4.500 19 H 0.065 0.935 20 C 0.037 3.963 21 N -0.822 5.822 22 Si 0.981 3.019 23 H -0.261 1.261 24 H -0.263 1.263 25 H -0.263 1.263 26 C -0.234 4.234 27 C -0.086 4.086 28 C -0.135 4.135 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.413 0.587 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.425 0.575 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.289 0.711 42 H 0.088 0.912 43 H 0.131 0.869 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.112 15.745 -4.550 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.059 4.059 3 C -0.149 4.149 4 C -0.084 4.084 5 C -0.167 4.167 6 C 0.352 3.648 7 O -0.452 6.452 8 N -0.368 5.368 9 C -0.015 4.015 10 C 0.290 3.710 11 O -0.434 6.434 12 N -0.296 5.296 13 C 0.063 3.937 14 C -0.270 4.270 15 C -0.111 4.111 16 C -0.217 4.217 17 C 0.085 3.915 18 C -0.530 4.530 19 H 0.083 0.917 20 C -0.178 4.178 21 N -0.448 5.448 22 Si 0.802 3.198 23 H -0.185 1.185 24 H -0.188 1.188 25 H -0.187 1.187 26 C -0.256 4.256 27 C -0.105 4.105 28 C -0.153 4.153 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.252 0.748 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.264 0.736 38 H 0.151 0.849 39 H 0.140 0.860 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.148 0.852 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.022 15.734 -4.442 22.203 hybrid contribution 0.223 -0.984 0.416 1.092 sum -14.799 14.750 -4.027 21.279 Atomic orbital electron populations 1.20948 0.88604 1.04248 1.03666 1.20576 0.98051 0.92683 0.94567 1.21333 0.93066 0.99229 1.01300 1.21373 0.94863 0.97112 0.95077 1.19841 0.91378 0.95722 1.09738 1.18530 0.88105 0.82812 0.75319 1.90735 1.70598 1.31896 1.51945 1.45680 1.06451 1.09783 1.74849 1.21104 0.81604 0.91968 1.06827 1.21051 0.82562 0.91820 0.75575 1.90741 1.55858 1.47203 1.49588 1.43183 1.07184 1.07525 1.71711 1.17475 0.95420 0.84066 0.96731 1.20490 1.00389 0.97484 1.08588 1.20844 0.98891 0.93273 0.98070 1.21327 0.99282 0.99557 1.01499 1.17840 0.92178 0.91340 0.90176 1.19738 0.96520 1.07176 1.29529 0.91703 1.26702 0.95786 1.01497 0.93829 1.69856 1.09510 1.31050 1.34391 0.85221 0.78960 0.76990 0.78632 1.18513 1.18779 1.18726 1.20932 1.03863 0.93938 1.06832 1.21519 0.95537 0.96873 0.96573 1.21319 0.93355 0.99303 1.01297 0.89623 0.90374 0.89954 0.82790 0.84885 0.74761 0.85866 0.86426 0.73627 0.84929 0.85978 0.87848 0.90021 0.89392 0.85151 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.01 71.24 0.71 -0.20 16 2 C -0.06 -0.81 5.89 -19.80 -0.12 -0.93 16 3 C -0.13 -1.95 9.68 22.23 0.22 -1.74 16 4 C -0.07 -1.31 9.60 22.53 0.22 -1.09 16 5 C -0.16 -3.76 5.87 -20.09 -0.12 -3.88 16 6 C 0.56 15.06 7.77 86.79 0.67 15.73 16 7 O -0.57 -17.88 16.35 -3.88 -0.06 -17.94 16 8 N -0.71 -18.21 5.48 -469.69 -2.57 -20.78 16 9 C 0.11 2.65 6.16 85.63 0.53 3.17 16 10 C 0.50 16.07 7.63 87.66 0.67 16.74 16 11 O -0.56 -22.85 13.42 -3.04 -0.04 -22.89 16 12 N -0.65 -20.63 5.34 -303.65 -1.62 -22.25 16 13 C 0.16 6.71 6.25 38.10 0.24 6.95 16 14 C -0.25 -10.08 9.97 22.58 0.23 -9.85 16 15 C -0.09 -4.11 10.02 22.20 0.22 -3.89 16 16 C -0.20 -10.42 8.69 22.75 0.20 -10.23 16 17 C 0.09 4.93 5.57 -21.31 -0.12 4.81 16 18 C -0.50 -28.42 9.05 23.46 0.21 -28.20 16 19 H 0.06 3.69 7.90 -2.91 -0.02 3.66 16 20 C 0.04 1.91 5.16 85.25 0.44 2.35 16 21 N -0.82 -43.46 10.94 21.82 0.24 -43.22 16 22 Si 0.98 39.44 29.59 68.60 2.03 41.47 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 24 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 26 C -0.23 -12.18 8.39 22.85 0.19 -11.98 16 27 C -0.09 -1.73 9.54 22.53 0.21 -1.51 16 28 C -0.13 -2.17 9.68 22.23 0.22 -1.96 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 31 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 32 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.13 2.65 7.65 -2.91 -0.02 2.63 16 34 H 0.41 10.71 5.47 -92.71 -0.51 10.20 16 35 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 37 H 0.43 9.47 8.82 -92.71 -0.82 8.65 16 38 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 39 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 40 H 0.10 5.70 6.16 -2.91 -0.02 5.69 16 41 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 42 H 0.09 4.77 6.49 -2.91 -0.02 4.75 16 43 H 0.13 2.51 6.41 -2.91 -0.02 2.49 16 44 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -72.96 377.36 2.52 -70.43 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: -0.26 Total: 40.90 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 4.82 Total: -25.72 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -3.95 Total: -86.25 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.10 Total: -40.83 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -72.96 2.52 -70.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144878278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.017 kcal (2) G-P(sol) polarization free energy of solvation -72.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds