Wall clock time and date at job start Tue Mar 31 2020 20:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 119.99712 * 2 1 4 4 H 1.48493 * 109.47033 * 239.99493 * 3 2 1 5 5 H 1.48491 * 109.47375 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46872 * 120.00029 * 3 2 1 7 7 C 1.38942 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00329 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99506 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00112 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99316 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46489 * 180.02562 * 12 10 9 14 14 C 1.46907 * 110.99692 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46743 * 179.97438 * 14 13 12 16 16 N 1.46507 * 109.46737 * 180.02562 * 15 14 13 17 17 C 1.34775 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00063 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00105 * 180.02562 * 17 16 15 20 20 N 1.46493 * 109.47225 * 179.97438 * 19 17 16 21 21 C 1.34778 * 119.99793 * 179.97438 * 20 19 17 22 22 O 1.21695 * 120.00192 * 359.97438 * 21 20 19 23 23 C 1.46661 * 119.99796 * 179.97438 * 21 20 19 24 24 C 1.36547 * 125.98711 * 179.97438 * 23 21 20 25 25 C 1.40360 * 106.70833 * 180.02562 * 24 23 21 26 26 C 1.35131 * 107.11647 * 359.97438 * 25 24 23 27 27 O 1.33934 * 108.76477 * 0.02562 * 26 25 24 28 28 H 0.97000 * 120.00074 * 0.02562 * 1 2 3 29 29 H 0.96992 * 120.00196 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47545 * 60.00666 * 12 10 9 31 31 H 1.09002 * 109.47224 * 299.99996 * 12 10 9 32 32 H 1.00900 * 111.00342 * 303.94855 * 13 12 10 33 33 H 1.08998 * 109.46916 * 60.00560 * 14 13 12 34 34 H 1.08996 * 109.46994 * 299.99770 * 14 13 12 35 35 H 1.08999 * 109.47291 * 60.00830 * 15 14 13 36 36 H 1.08996 * 109.47354 * 299.99753 * 15 14 13 37 37 H 0.96995 * 119.99777 * 0.02562 * 16 15 14 38 38 H 1.08997 * 109.47342 * 59.99110 * 19 17 16 39 39 H 1.09001 * 109.46775 * 299.99724 * 19 17 16 40 40 H 0.96998 * 120.00266 * 359.97438 * 20 19 17 41 41 H 1.08005 * 126.64485 * 0.02562 * 24 23 21 42 42 H 1.08003 * 126.44294 * 180.02562 * 25 24 23 43 43 H 1.07997 * 125.61851 * 180.26772 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1983 -5.9794 0.0027 14 6 1.4980 -7.2708 0.0039 15 6 2.5229 -8.4067 0.0037 16 7 1.8245 -9.6946 0.0043 17 6 2.5293 -10.8434 0.0048 18 8 3.7416 -10.8110 0.0043 19 6 1.8109 -12.1682 0.0048 20 7 2.7922 -13.2558 0.0048 21 6 2.3770 -14.5380 0.0053 22 8 1.1869 -14.7923 0.0062 23 6 3.3595 -15.6269 0.0047 24 6 3.0766 -16.9628 0.0056 25 6 4.3082 -17.6361 0.0051 26 6 5.2766 -16.6936 0.0034 27 8 4.7010 -15.4843 0.0033 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0016 30 1 0.6167 -4.9209 -0.8876 31 1 0.6173 -4.9204 0.8924 32 1 2.8332 -5.9128 -0.7787 33 1 0.8729 -7.3459 -0.8859 34 1 0.8734 -7.3446 0.8941 35 1 3.1484 -8.3319 0.8933 36 1 3.1472 -8.3328 -0.8867 37 1 0.8549 -9.7204 0.0043 38 1 1.1862 -12.2428 -0.8853 39 1 1.1857 -12.2424 0.8946 40 1 3.7408 -13.0532 0.0044 41 1 2.0953 -17.4139 0.0065 42 1 4.4544 -18.7061 0.0052 43 1 6.3397 -16.8841 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149885161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:34 Heat of formation + Delta-G solvation = -85.707440 kcal Electronic energy + Delta-G solvation = -26557.501378 eV Core-core repulsion = 22218.760607 eV Total energy + Delta-G solvation = -4338.740772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.16883 -40.54690 -39.45628 -38.35535 -36.49772 -35.08266 -34.50943 -33.79849 -33.54548 -31.28164 -30.97291 -29.87070 -27.97891 -25.91162 -24.06498 -23.43075 -22.28386 -22.17719 -21.01133 -20.84094 -19.38954 -19.27171 -17.94624 -17.39740 -16.99508 -16.93052 -16.55326 -16.39959 -16.00469 -15.79372 -15.71685 -14.99227 -14.77699 -14.55521 -14.14529 -14.08383 -13.70151 -13.57619 -13.49127 -13.47817 -13.22483 -13.15777 -13.05370 -12.43445 -11.98174 -11.57371 -11.51678 -11.48804 -11.03198 -10.91024 -10.57637 -10.45926 -10.43285 -10.23572 -9.82774 -9.52646 -9.45777 -9.19180 -8.54620 -8.17842 -7.99216 -6.44187 -3.85217 0.54591 1.84517 2.05912 2.12838 2.44214 2.67224 2.94189 3.18858 3.24830 3.29331 3.86850 4.02755 4.13163 4.21408 4.37266 4.38883 4.51391 4.75940 4.78462 4.81276 4.91350 5.10972 5.12973 5.22990 5.25983 5.30829 5.38062 5.62775 5.67202 5.73320 5.79268 5.81708 5.89670 5.99034 6.21194 6.28963 6.91245 6.97590 7.07058 7.50869 7.51955 7.52912 7.70911 8.03120 8.58105 9.15125 9.50861 10.02134 10.73389 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.048129 B = 0.001234 C = 0.001205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.628977 B =22685.288309 C =23233.836475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.053 3.947 13 N -0.666 5.666 14 C 0.049 3.951 15 C 0.119 3.881 16 N -0.721 5.721 17 C 0.508 3.492 18 O -0.533 6.533 19 C 0.100 3.900 20 N -0.708 5.708 21 C 0.608 3.392 22 O -0.521 6.521 23 C -0.082 4.082 24 C -0.116 4.116 25 C -0.227 4.227 26 C -0.001 4.001 27 O -0.162 6.162 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.353 0.647 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.404 0.596 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.418 0.582 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 -33.025 -0.901 33.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.081 4.081 15 C -0.004 4.004 16 N -0.373 5.373 17 C 0.293 3.707 18 O -0.409 6.409 19 C -0.028 4.028 20 N -0.363 5.363 21 C 0.394 3.606 22 O -0.399 6.399 23 C -0.134 4.134 24 C -0.137 4.137 25 C -0.246 4.246 26 C -0.071 4.071 27 O -0.057 6.057 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.172 0.828 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.239 0.761 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.257 0.743 41 H 0.179 0.821 42 H 0.176 0.824 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.400 -32.629 -0.222 32.718 hybrid contribution -0.651 0.713 -0.891 1.314 sum 1.749 -31.915 -1.114 31.983 Atomic orbital electron populations 1.69603 1.05949 1.28315 1.50439 1.25257 0.95629 0.99729 0.97199 0.85911 0.78771 0.80398 0.79116 1.19898 1.20958 1.19843 1.19668 0.93388 0.82230 1.47793 0.87929 1.41845 1.09190 1.04573 1.64252 1.19769 0.88396 0.84693 0.84724 1.90533 1.13722 1.87012 1.55404 1.21671 0.94192 0.90777 1.01370 1.59931 1.18881 0.99422 1.51639 1.22083 0.95492 0.89388 1.01180 1.21353 0.95038 0.80285 1.03728 1.45781 1.10639 1.05794 1.75098 1.20387 0.88058 0.85693 0.76531 1.90749 1.13683 1.87206 1.49291 1.21124 0.91815 0.84316 1.05497 1.45572 1.11729 1.04370 1.74591 1.16461 0.86441 0.80905 0.76757 1.90903 1.14823 1.83392 1.50779 1.21906 0.81019 0.95624 1.14823 1.22005 1.00367 0.91324 0.99960 1.21901 0.91864 1.01311 1.09563 1.24500 0.99679 0.80997 1.01935 1.84101 1.18788 1.32520 1.70287 0.91790 0.77446 0.93665 0.89429 0.82776 0.94794 0.90324 0.89868 0.91056 0.76139 0.87720 0.87662 0.74267 0.82072 0.82418 0.77146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 10 C 0.44 10.15 7.82 -10.98 -0.09 10.07 16 11 O -0.58 -15.66 15.78 5.55 0.09 -15.58 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 N -0.67 -9.99 6.13 -115.05 -0.70 -10.70 16 14 C 0.05 0.50 5.80 -3.82 -0.02 0.48 16 15 C 0.12 1.20 5.93 -4.04 -0.02 1.17 16 16 N -0.72 -5.37 5.56 -60.29 -0.33 -5.70 16 17 C 0.51 4.56 7.90 -10.99 -0.09 4.47 16 18 O -0.53 -6.85 15.67 5.56 0.09 -6.77 16 19 C 0.10 0.69 6.15 -5.20 -0.03 0.66 16 20 N -0.71 -6.06 5.52 -62.81 -0.35 -6.40 16 21 C 0.61 5.93 7.79 -12.86 -0.10 5.83 16 22 O -0.52 -6.24 16.86 5.19 0.09 -6.15 16 23 C -0.08 -0.72 7.13 -36.79 -0.26 -0.98 16 24 C -0.12 -0.86 10.62 -39.39 -0.42 -1.28 16 25 C -0.23 -1.21 10.87 -39.89 -0.43 -1.65 16 26 C 0.00 -0.01 12.08 29.63 0.36 0.35 16 27 O -0.16 -1.26 10.40 5.00 0.05 -1.21 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 29 H 0.39 9.29 7.90 -40.82 -0.32 8.96 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.35 5.51 8.43 -39.29 -0.33 5.18 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.40 1.77 8.47 -40.82 -0.35 1.43 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.42 3.70 7.19 -40.82 -0.29 3.41 16 41 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.16 0.45 8.06 -52.48 -0.42 0.02 16 43 H 0.21 0.20 8.06 -52.49 -0.42 -0.22 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -35.94 385.34 -6.46 -42.40 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -5.45 Total: 14.00 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -1.38 Total: 12.02 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.72 Total: -60.39 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: 0.31 Total: -29.70 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.94 -6.46 -42.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149885161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.307 kcal (2) G-P(sol) polarization free energy of solvation -35.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds