Wall clock time and date at job start Tue Mar 31 2020 20:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 119.99712 * 2 1 4 4 H 1.48493 * 109.47033 * 239.99493 * 3 2 1 5 5 H 1.48491 * 109.47375 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46872 * 120.00029 * 3 2 1 7 7 C 1.38942 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00329 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99506 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00112 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99316 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46489 * 180.02562 * 12 10 9 14 14 C 1.46907 * 110.99692 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46743 * 179.97438 * 14 13 12 16 16 N 1.46507 * 109.46737 * 180.02562 * 15 14 13 17 17 C 1.34775 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00063 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00105 * 180.02562 * 17 16 15 20 20 N 1.46493 * 109.47225 * 179.97438 * 19 17 16 21 21 C 1.34778 * 119.99793 * 179.97438 * 20 19 17 22 22 O 1.21695 * 120.00192 * 359.97438 * 21 20 19 23 23 C 1.46661 * 119.99796 * 179.97438 * 21 20 19 24 24 C 1.36547 * 125.98711 * 179.97438 * 23 21 20 25 25 C 1.40360 * 106.70833 * 180.02562 * 24 23 21 26 26 C 1.35131 * 107.11647 * 359.97438 * 25 24 23 27 27 O 1.33934 * 108.76477 * 0.02562 * 26 25 24 28 28 H 0.97000 * 120.00074 * 0.02562 * 1 2 3 29 29 H 0.96992 * 120.00196 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47545 * 60.00666 * 12 10 9 31 31 H 1.09002 * 109.47224 * 299.99996 * 12 10 9 32 32 H 1.00900 * 111.00342 * 303.94855 * 13 12 10 33 33 H 1.08998 * 109.46916 * 60.00560 * 14 13 12 34 34 H 1.08996 * 109.46994 * 299.99770 * 14 13 12 35 35 H 1.08999 * 109.47291 * 60.00830 * 15 14 13 36 36 H 1.08996 * 109.47354 * 299.99753 * 15 14 13 37 37 H 0.96995 * 119.99777 * 0.02562 * 16 15 14 38 38 H 1.08997 * 109.47342 * 59.99110 * 19 17 16 39 39 H 1.09001 * 109.46775 * 299.99724 * 19 17 16 40 40 H 0.96998 * 120.00266 * 359.97438 * 20 19 17 41 41 H 1.08005 * 126.64485 * 0.02562 * 24 23 21 42 42 H 1.08003 * 126.44294 * 180.02562 * 25 24 23 43 43 H 1.07997 * 125.61851 * 180.26772 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1983 -5.9794 0.0027 14 6 1.4980 -7.2708 0.0039 15 6 2.5229 -8.4067 0.0037 16 7 1.8245 -9.6946 0.0043 17 6 2.5293 -10.8434 0.0048 18 8 3.7416 -10.8110 0.0043 19 6 1.8109 -12.1682 0.0048 20 7 2.7922 -13.2558 0.0048 21 6 2.3770 -14.5380 0.0053 22 8 1.1869 -14.7923 0.0062 23 6 3.3595 -15.6269 0.0047 24 6 3.0766 -16.9628 0.0056 25 6 4.3082 -17.6361 0.0051 26 6 5.2766 -16.6936 0.0034 27 8 4.7010 -15.4843 0.0033 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0016 30 1 0.6167 -4.9209 -0.8876 31 1 0.6173 -4.9204 0.8924 32 1 2.8332 -5.9128 -0.7787 33 1 0.8729 -7.3459 -0.8859 34 1 0.8734 -7.3446 0.8941 35 1 3.1484 -8.3319 0.8933 36 1 3.1472 -8.3328 -0.8867 37 1 0.8549 -9.7204 0.0043 38 1 1.1862 -12.2428 -0.8853 39 1 1.1857 -12.2424 0.8946 40 1 3.7408 -13.0532 0.0044 41 1 2.0953 -17.4139 0.0065 42 1 4.4544 -18.7061 0.0052 43 1 6.3397 -16.8841 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149885161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:33 Heat of formation + Delta-G solvation = -117.573992 kcal Electronic energy + Delta-G solvation = -26558.883216 eV Core-core repulsion = 22218.760607 eV Total energy + Delta-G solvation = -4340.122609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.66340 -41.28033 -40.25225 -40.09539 -37.55158 -36.04156 -35.75952 -35.27056 -34.04420 -33.26577 -31.63416 -30.74704 -28.85331 -27.37798 -25.54405 -24.13771 -23.08868 -22.71722 -21.74160 -21.45021 -21.09333 -19.96095 -19.89457 -18.15970 -17.75571 -17.63415 -17.52801 -17.25341 -17.02172 -16.80790 -16.55195 -16.41708 -15.88872 -15.83911 -15.38781 -15.29895 -14.91911 -14.59008 -14.22467 -14.12802 -14.11154 -13.93981 -13.64356 -13.56803 -13.49843 -13.30531 -12.92719 -12.59088 -12.43359 -12.39995 -12.12171 -11.65821 -11.50053 -11.23924 -11.06429 -10.50887 -10.36051 -10.21240 -10.01217 -9.68200 -9.37405 -8.46463 -5.95165 -0.01988 1.39386 1.40213 1.42024 1.42421 1.46149 1.53135 1.87125 2.02287 2.05906 2.26128 2.32778 3.00486 3.21142 3.46960 3.62716 3.72667 3.90353 3.94871 4.10240 4.11944 4.27159 4.30328 4.32751 4.47653 4.51831 4.60881 4.62454 4.88548 4.89254 4.93519 4.94882 5.02483 5.25293 5.38216 5.41197 5.79727 5.84994 6.07401 6.25431 6.33454 6.37316 6.60637 6.83281 7.05574 7.13056 7.56748 8.12391 8.70555 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.048129 B = 0.001234 C = 0.001205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.628977 B =22685.288309 C =23233.836475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.571 5.571 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.068 3.932 13 N -0.686 5.686 14 C 0.057 3.943 15 C 0.128 3.872 16 N -0.704 5.704 17 C 0.511 3.489 18 O -0.576 6.576 19 C 0.103 3.897 20 N -0.708 5.708 21 C 0.607 3.393 22 O -0.552 6.552 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.234 4.234 26 C 0.009 3.991 27 O -0.176 6.176 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.346 0.654 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.422 0.578 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.417 0.583 41 H 0.164 0.836 42 H 0.184 0.816 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 -34.211 -0.994 34.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.096 0.904 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.512 6.512 12 C -0.064 4.064 13 N -0.319 5.319 14 C -0.072 4.072 15 C 0.003 3.997 16 N -0.358 5.358 17 C 0.297 3.703 18 O -0.455 6.455 19 C -0.023 4.023 20 N -0.361 5.361 21 C 0.395 3.605 22 O -0.432 6.432 23 C -0.167 4.167 24 C -0.140 4.140 25 C -0.253 4.253 26 C -0.061 4.061 27 O -0.072 6.072 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.165 0.835 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.260 0.740 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.255 0.745 41 H 0.182 0.818 42 H 0.201 0.799 43 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 1.627 -33.821 -0.312 33.862 hybrid contribution -0.366 0.969 -0.859 1.345 sum 1.261 -32.852 -1.171 32.897 Atomic orbital electron populations 1.69657 1.06762 1.29373 1.50185 1.25994 0.96516 1.02287 0.96186 0.85019 0.77808 0.76791 0.78919 1.19734 1.19421 1.19822 1.19636 0.92724 0.84154 1.50148 0.90421 1.41909 1.09353 1.04644 1.64975 1.20963 0.88287 0.86329 0.82250 1.90502 1.16020 1.87995 1.56708 1.21522 0.93736 0.87505 1.03618 1.59896 1.19379 1.00878 1.51782 1.22091 0.95287 0.86806 1.03050 1.21094 0.94974 0.81407 1.02200 1.45570 1.11506 1.04534 1.74156 1.20718 0.87532 0.86537 0.75518 1.90736 1.15643 1.87789 1.51348 1.21242 0.91383 0.82530 1.07158 1.45618 1.11909 1.04513 1.74051 1.16596 0.86335 0.81310 0.76220 1.90869 1.15906 1.83860 1.52572 1.21824 0.81505 0.95782 1.17578 1.22287 1.01499 0.91246 0.98963 1.22248 0.90875 1.02713 1.09438 1.25393 1.01357 0.79918 0.99388 1.84094 1.18411 1.34006 1.70659 0.91267 0.76853 0.90904 0.87291 0.83545 0.92341 0.88717 0.92028 0.92203 0.73960 0.85917 0.85948 0.74510 0.81833 0.79850 0.73269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.89 13.05 21.66 0.28 -48.60 16 2 C -0.01 -0.52 5.50 84.92 0.47 -0.05 16 3 Si 0.99 42.60 29.55 68.60 2.03 44.62 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.34 -19.01 9.68 84.04 0.81 -18.20 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.57 -28.73 5.29 -306.98 -1.62 -30.36 16 10 C 0.43 20.14 7.82 87.66 0.69 20.83 16 11 O -0.63 -34.44 15.78 -3.06 -0.05 -34.48 16 12 C 0.07 2.15 6.17 85.56 0.53 2.67 16 13 N -0.69 -19.71 6.13 -517.91 -3.17 -22.88 16 14 C 0.06 1.02 5.80 86.30 0.50 1.52 16 15 C 0.13 2.43 5.93 86.38 0.51 2.94 16 16 N -0.70 -9.29 5.56 -463.05 -2.57 -11.87 16 17 C 0.51 8.76 7.90 87.66 0.69 9.45 16 18 O -0.58 -14.98 15.67 -3.03 -0.05 -15.02 16 19 C 0.10 1.31 6.15 85.63 0.53 1.84 16 20 N -0.71 -12.10 5.52 -470.85 -2.60 -14.70 16 21 C 0.61 12.04 7.79 86.44 0.67 12.71 16 22 O -0.55 -13.32 16.86 -4.33 -0.07 -13.40 16 23 C -0.12 -2.04 7.13 24.08 0.17 -1.87 16 24 C -0.12 -1.73 10.62 22.39 0.24 -1.49 16 25 C -0.23 -2.08 10.87 22.07 0.24 -1.84 16 26 C 0.01 0.07 12.08 67.10 0.81 0.88 16 27 O -0.18 -2.66 10.40 -5.01 -0.05 -2.71 16 28 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.40 18.77 7.90 -92.71 -0.73 18.04 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.35 10.69 8.43 -89.69 -0.76 9.93 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.42 2.51 8.47 -92.71 -0.79 1.73 16 38 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.42 7.58 7.19 -92.71 -0.67 6.91 16 41 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 42 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 43 H 0.25 -0.34 8.06 -2.91 -0.02 -0.37 16 Total: -1.00 -80.36 385.34 -2.86 -83.22 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: -1.84 Total: 36.78 kcal Atomic # 6 Polarization: 22.54 SS G_CDS: 6.86 Total: 29.40 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -9.69 Total: -128.40 kcal Atomic # 8 Polarization: -65.40 SS G_CDS: -0.22 Total: -65.62 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -80.36 -2.86 -83.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149885161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.355 kcal (2) G-P(sol) polarization free energy of solvation -80.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds