Wall clock time and date at job start Tue Mar 31 2020 20:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00438 * 2 1 4 4 H 1.48504 * 109.46941 * 240.00434 * 3 2 1 5 5 H 1.48504 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47443 * 120.00254 * 3 2 1 7 7 C 1.38955 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00149 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00419 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99431 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00459 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47015 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99516 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.46960 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47202 * 179.97438 * 15 14 13 17 17 C 1.34781 * 119.99890 * 179.97438 * 16 15 14 18 18 O 1.21487 * 119.99801 * 0.02562 * 17 16 15 19 19 C 1.48328 * 119.99629 * 180.02562 * 17 16 15 20 20 N 1.31599 * 127.15849 * 359.97438 * 19 17 16 21 21 O 1.21562 * 111.54641 * 180.02562 * 20 19 17 22 22 C 1.32812 * 111.52210 * 359.94620 * 21 20 19 23 23 C 1.35720 * 106.69976 * 0.09296 * 22 21 20 24 24 C 1.50033 * 123.86286 * 179.88704 * 23 22 21 25 25 O 1.43611 * 107.83126 * 345.31949 * 24 23 22 26 26 C 1.43001 * 114.38798 * 49.99740 * 25 24 23 27 27 C 1.50466 * 130.86255 * 180.22198 * 22 21 20 28 28 H 0.96999 * 119.99782 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99912 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.46808 * 59.99325 * 12 10 9 31 31 H 1.08999 * 109.46886 * 299.99765 * 12 10 9 32 32 H 1.00894 * 111.00222 * 303.95339 * 13 12 10 33 33 H 1.08994 * 109.46877 * 60.00180 * 14 13 12 34 34 H 1.08997 * 109.47173 * 299.99757 * 14 13 12 35 35 H 1.09001 * 109.46762 * 59.99854 * 15 14 13 36 36 H 1.09001 * 109.47224 * 300.00370 * 15 14 13 37 37 H 0.97000 * 119.99921 * 0.02562 * 16 15 14 38 38 H 1.08999 * 109.78994 * 225.73795 * 24 23 22 39 39 H 1.08996 * 109.83579 * 104.93114 * 24 23 22 40 40 H 1.09002 * 109.40049 * 49.71516 * 26 25 24 41 41 H 1.09003 * 109.40367 * 169.54091 * 26 25 24 42 42 H 1.09001 * 109.72390 * 44.38492 * 27 22 21 43 43 H 1.09003 * 109.82539 * 283.51966 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6962 -1.2126 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2434 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0016 14 6 1.4976 -7.2709 -0.0016 15 6 2.5224 -8.4070 -0.0028 16 7 1.8240 -9.6947 -0.0021 17 6 2.5287 -10.8436 -0.0035 18 8 3.7432 -10.8112 -0.0047 19 6 1.8215 -12.1474 -0.0034 20 7 0.5206 -12.3460 -0.0016 21 8 0.2499 -13.5311 -0.0016 22 6 1.3459 -14.2812 -0.0045 23 6 2.4019 -13.4287 -0.0044 24 6 3.8350 -13.8730 -0.0048 25 8 3.8635 -15.2665 0.3413 26 6 2.9655 -16.0815 -0.4165 27 6 1.5156 -15.7763 -0.0100 28 1 -0.4850 0.8401 0.0004 29 1 0.3532 -2.3906 0.0002 30 1 0.6170 -4.9204 -0.8913 31 1 0.6165 -4.9209 0.8886 32 1 2.8329 -5.9123 -0.7829 33 1 0.8724 -7.3451 -0.8913 34 1 0.8730 -7.3454 0.8886 35 1 3.1480 -8.3328 0.8868 36 1 3.1467 -8.3322 -0.8931 37 1 0.8543 -9.7205 -0.0014 38 1 4.3996 -13.2988 0.7298 39 1 4.2663 -13.7299 -0.9955 40 1 3.0954 -15.8727 -1.4784 41 1 3.1814 -17.1327 -0.2252 42 1 0.8284 -16.2218 -0.7293 43 1 1.3192 -16.1743 0.9855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151693768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:08 Heat of formation + Delta-G solvation = -45.955277 kcal Electronic energy + Delta-G solvation = -27463.225807 eV Core-core repulsion = 23126.208819 eV Total energy + Delta-G solvation = -4337.016988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.66872 -40.01586 -39.41425 -38.34150 -36.43597 -34.68319 -34.45620 -33.83563 -33.69367 -31.29812 -31.20062 -29.56626 -27.16714 -26.30578 -24.89708 -24.53945 -23.60756 -22.16910 -21.64688 -20.42399 -19.31235 -18.51171 -18.39298 -17.91376 -17.38967 -16.67502 -16.34401 -16.23783 -16.06253 -15.87256 -15.43505 -15.26945 -14.74339 -14.52077 -14.29868 -14.16501 -13.96540 -13.86460 -13.47856 -13.39649 -13.20375 -12.51178 -12.35944 -12.12809 -11.94854 -11.73982 -11.56589 -11.50531 -11.48368 -11.02269 -10.92215 -10.70340 -10.47448 -10.44801 -10.22550 -9.72718 -9.51545 -9.46237 -8.53249 -8.16462 -7.98133 -6.43095 -3.84067 0.56306 1.03972 2.19711 2.49352 2.72238 3.07883 3.19758 3.25528 3.30071 3.46254 3.84374 3.88347 4.04637 4.11087 4.20351 4.33280 4.40052 4.46994 4.68383 4.77551 4.82611 4.90102 4.95125 4.98089 5.11213 5.14188 5.19882 5.24107 5.32542 5.44549 5.68488 5.71710 5.82082 5.91117 5.97784 6.22396 6.42261 6.93802 7.06934 7.41627 7.52671 7.53959 7.67806 8.04249 8.59249 9.16174 9.52018 10.03352 10.74493 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.042888 B = 0.001444 C = 0.001401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.704559 B =19381.699866 C =19976.103310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.582 6.582 12 C 0.052 3.948 13 N -0.665 5.665 14 C 0.049 3.951 15 C 0.119 3.881 16 N -0.710 5.710 17 C 0.599 3.401 18 O -0.515 6.515 19 C -0.002 4.002 20 N -0.334 5.334 21 O 0.134 5.866 22 C -0.026 4.026 23 C -0.201 4.201 24 C 0.139 3.861 25 O -0.374 6.374 26 C 0.060 3.940 27 C -0.070 4.070 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.353 0.647 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.407 0.593 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 -34.208 -2.042 34.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.298 5.298 14 C -0.082 4.082 15 C -0.004 4.004 16 N -0.362 5.362 17 C 0.382 3.618 18 O -0.388 6.388 19 C -0.160 4.160 20 N -0.038 5.038 21 O 0.062 5.938 22 C -0.091 4.091 23 C -0.206 4.206 24 C 0.063 3.937 25 O -0.292 6.292 26 C -0.017 4.017 27 C -0.109 4.109 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.172 0.828 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.242 0.758 38 H 0.140 0.860 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.378 -33.142 -1.221 33.193 hybrid contribution -0.843 0.765 -1.083 1.571 sum -2.221 -32.378 -2.304 32.535 Atomic orbital electron populations 1.69603 1.05951 1.28301 1.50434 1.25266 0.95639 0.99744 0.97217 0.85903 0.78755 0.80372 0.79107 1.19904 1.20967 1.19847 1.19673 0.93391 0.82221 1.47790 0.87916 1.41845 1.09199 1.04574 1.64262 1.19757 0.88391 0.84674 0.84706 1.90535 1.13704 1.87016 1.55403 1.21674 0.94203 0.90760 1.01400 1.59923 1.18874 0.99346 1.51639 1.22075 0.95458 0.89331 1.01292 1.21414 0.95077 0.79907 1.03981 1.45756 1.10901 1.05581 1.73960 1.16746 0.86299 0.81435 0.77350 1.90828 1.12281 1.86491 1.49245 1.22850 0.90011 0.96099 1.07017 1.74683 1.16020 0.95616 1.17435 1.84649 1.32149 1.11610 1.65348 1.23986 0.84738 0.97187 1.03221 1.21387 0.99758 0.91025 1.08421 1.21011 0.88676 0.81038 1.02983 1.88153 1.61175 1.17799 1.62054 1.22765 0.86483 0.96533 0.95955 1.21058 0.99820 0.84537 1.05449 0.91801 0.77444 0.93660 0.89411 0.82753 0.94752 0.90274 0.89537 0.90728 0.75818 0.85965 0.90211 0.91943 0.86708 0.87512 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.24 5.29 -10.96 -0.06 -14.29 16 10 C 0.44 10.36 7.82 -10.99 -0.09 10.27 16 11 O -0.58 -15.87 15.78 5.54 0.09 -15.79 16 12 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 13 N -0.66 -10.46 6.13 -115.06 -0.70 -11.16 16 14 C 0.05 0.56 5.80 -3.82 -0.02 0.54 16 15 C 0.12 1.36 5.93 -4.04 -0.02 1.33 16 16 N -0.71 -7.40 5.55 -61.10 -0.34 -7.74 16 17 C 0.60 7.19 7.85 -12.11 -0.10 7.10 16 18 O -0.51 -7.42 16.29 5.38 0.09 -7.33 16 19 C 0.00 -0.02 7.18 -82.90 -0.60 -0.61 16 20 N -0.33 -3.40 11.90 33.26 0.40 -3.00 16 21 O 0.13 1.15 11.17 20.05 0.22 1.38 16 22 C -0.03 -0.19 7.49 -35.32 -0.26 -0.45 16 23 C -0.20 -1.84 6.15 -104.93 -0.65 -2.48 16 24 C 0.14 1.14 6.67 35.68 0.24 1.38 16 25 O -0.37 -2.75 10.76 -35.23 -0.38 -3.13 16 26 C 0.06 0.22 6.78 37.49 0.25 0.47 16 27 C -0.07 -0.22 6.54 -27.66 -0.18 -0.41 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.35 5.71 8.43 -39.29 -0.33 5.38 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.41 3.56 8.25 -40.82 -0.34 3.22 16 38 H 0.12 1.09 8.00 -51.93 -0.42 0.67 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.19 8.10 -51.93 -0.42 -0.23 16 41 H 0.11 0.14 8.14 -51.93 -0.42 -0.29 16 42 H 0.11 0.09 8.14 -51.93 -0.42 -0.34 16 43 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -34.37 373.91 -6.61 -40.98 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -5.56 Total: 12.20 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -1.69 Total: 9.95 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.02 Total: -59.96 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: 0.02 Total: -24.87 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.37 -6.61 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151693768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.974 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds