Wall clock time and date at job start Tue Mar 31 2020 20:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00438 * 2 1 4 4 H 1.48504 * 109.46941 * 240.00434 * 3 2 1 5 5 H 1.48504 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47443 * 120.00254 * 3 2 1 7 7 C 1.38955 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00149 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00419 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99431 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00459 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47015 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99516 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.46960 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47202 * 179.97438 * 15 14 13 17 17 C 1.34781 * 119.99890 * 179.97438 * 16 15 14 18 18 O 1.21487 * 119.99801 * 0.02562 * 17 16 15 19 19 C 1.48328 * 119.99629 * 180.02562 * 17 16 15 20 20 N 1.31599 * 127.15849 * 359.97438 * 19 17 16 21 21 O 1.21562 * 111.54641 * 180.02562 * 20 19 17 22 22 C 1.32812 * 111.52210 * 359.94620 * 21 20 19 23 23 C 1.35720 * 106.69976 * 0.09296 * 22 21 20 24 24 C 1.50033 * 123.86286 * 179.88704 * 23 22 21 25 25 O 1.43611 * 107.83126 * 345.31949 * 24 23 22 26 26 C 1.43001 * 114.38798 * 49.99740 * 25 24 23 27 27 C 1.50466 * 130.86255 * 180.22198 * 22 21 20 28 28 H 0.96999 * 119.99782 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99912 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.46808 * 59.99325 * 12 10 9 31 31 H 1.08999 * 109.46886 * 299.99765 * 12 10 9 32 32 H 1.00894 * 111.00222 * 303.95339 * 13 12 10 33 33 H 1.08994 * 109.46877 * 60.00180 * 14 13 12 34 34 H 1.08997 * 109.47173 * 299.99757 * 14 13 12 35 35 H 1.09001 * 109.46762 * 59.99854 * 15 14 13 36 36 H 1.09001 * 109.47224 * 300.00370 * 15 14 13 37 37 H 0.97000 * 119.99921 * 0.02562 * 16 15 14 38 38 H 1.08999 * 109.78994 * 225.73795 * 24 23 22 39 39 H 1.08996 * 109.83579 * 104.93114 * 24 23 22 40 40 H 1.09002 * 109.40049 * 49.71516 * 26 25 24 41 41 H 1.09003 * 109.40367 * 169.54091 * 26 25 24 42 42 H 1.09001 * 109.72390 * 44.38492 * 27 22 21 43 43 H 1.09003 * 109.82539 * 283.51966 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6962 -1.2126 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2434 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0016 14 6 1.4976 -7.2709 -0.0016 15 6 2.5224 -8.4070 -0.0028 16 7 1.8240 -9.6947 -0.0021 17 6 2.5287 -10.8436 -0.0035 18 8 3.7432 -10.8112 -0.0047 19 6 1.8215 -12.1474 -0.0034 20 7 0.5206 -12.3460 -0.0016 21 8 0.2499 -13.5311 -0.0016 22 6 1.3459 -14.2812 -0.0045 23 6 2.4019 -13.4287 -0.0044 24 6 3.8350 -13.8730 -0.0048 25 8 3.8635 -15.2665 0.3413 26 6 2.9655 -16.0815 -0.4165 27 6 1.5156 -15.7763 -0.0100 28 1 -0.4850 0.8401 0.0004 29 1 0.3532 -2.3906 0.0002 30 1 0.6170 -4.9204 -0.8913 31 1 0.6165 -4.9209 0.8886 32 1 2.8329 -5.9123 -0.7829 33 1 0.8724 -7.3451 -0.8913 34 1 0.8730 -7.3454 0.8886 35 1 3.1480 -8.3328 0.8868 36 1 3.1467 -8.3322 -0.8931 37 1 0.8543 -9.7205 -0.0014 38 1 4.3996 -13.2988 0.7298 39 1 4.2663 -13.7299 -0.9955 40 1 3.0954 -15.8727 -1.4784 41 1 3.1814 -17.1327 -0.2252 42 1 0.8284 -16.2218 -0.7293 43 1 1.3192 -16.1743 0.9855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151693768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:07 Heat of formation + Delta-G solvation = -75.020284 kcal Electronic energy + Delta-G solvation = -27464.486160 eV Core-core repulsion = 23126.208819 eV Total energy + Delta-G solvation = -4338.277342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.36372 -40.95376 -40.17161 -39.89775 -37.61018 -36.05382 -35.50636 -35.19485 -34.25980 -33.28398 -31.77676 -30.70392 -28.09314 -27.53570 -26.13008 -25.17417 -24.75286 -23.15084 -22.34419 -21.18509 -21.11907 -19.93840 -19.19439 -19.05149 -18.17547 -17.70553 -17.37603 -17.30895 -17.04387 -16.64692 -16.54144 -16.34099 -15.95651 -15.90541 -15.42982 -15.37547 -14.96051 -14.69675 -14.62251 -14.37008 -14.06171 -13.82247 -13.54073 -13.36572 -12.96827 -12.86577 -12.77915 -12.64835 -12.51989 -12.43941 -12.12856 -12.06895 -11.67612 -11.60306 -11.51482 -10.94706 -10.40513 -10.38386 -10.31339 -10.03076 -9.43851 -8.47768 -5.96688 -0.16971 0.37956 1.39397 1.41532 1.51125 1.53437 1.73963 1.83571 2.03629 2.28817 2.54372 2.74770 2.98935 3.19500 3.35931 3.48628 3.53977 3.66025 3.77670 3.95978 4.03003 4.12778 4.20085 4.28787 4.33390 4.39170 4.41894 4.46927 4.57278 4.65813 4.77118 4.79306 4.83738 4.89135 4.98011 5.05494 5.39804 5.79120 5.99310 6.03260 6.10787 6.28301 6.58634 6.70618 6.82436 7.11242 7.54496 8.09977 8.69242 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.042888 B = 0.001444 C = 0.001401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.704559 B =19381.699866 C =19976.103310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.338 4.338 8 H 0.079 0.921 9 N -0.571 5.571 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.067 3.933 13 N -0.683 5.683 14 C 0.058 3.942 15 C 0.127 3.873 16 N -0.699 5.699 17 C 0.596 3.404 18 O -0.546 6.546 19 C -0.020 4.020 20 N -0.346 5.346 21 O 0.140 5.860 22 C -0.010 4.010 23 C -0.224 4.224 24 C 0.144 3.856 25 O -0.390 6.390 26 C 0.050 3.950 27 C -0.067 4.067 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.348 0.652 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.417 0.583 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 -36.020 -2.337 36.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.097 0.903 9 N -0.209 5.209 10 C 0.223 3.777 11 O -0.511 6.511 12 C -0.065 4.065 13 N -0.316 5.316 14 C -0.072 4.072 15 C 0.004 3.996 16 N -0.351 5.351 17 C 0.380 3.620 18 O -0.423 6.423 19 C -0.177 4.177 20 N -0.048 5.048 21 O 0.067 5.933 22 C -0.075 4.075 23 C -0.230 4.230 24 C 0.067 3.933 25 O -0.309 6.309 26 C -0.026 4.026 27 C -0.105 4.105 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.167 0.833 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.254 0.746 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.072 -34.967 -1.516 35.134 hybrid contribution -0.356 1.176 -0.993 1.579 sum -3.428 -33.791 -2.509 34.057 Atomic orbital electron populations 1.69660 1.06792 1.29401 1.50094 1.26027 0.96547 1.02367 0.96145 0.84992 0.77777 0.76659 0.78928 1.19707 1.19394 1.19803 1.19649 0.92752 0.84099 1.50220 0.90349 1.41908 1.09361 1.04657 1.64927 1.20888 0.88268 0.86236 0.82348 1.90504 1.15934 1.87968 1.56714 1.21529 0.93764 0.87586 1.03603 1.59882 1.19309 1.00575 1.51836 1.22052 0.95218 0.87002 1.02897 1.21228 0.95014 0.80418 1.02985 1.45630 1.11316 1.04903 1.73251 1.16974 0.86053 0.82193 0.76737 1.90805 1.13632 1.87031 1.50800 1.22751 0.90531 0.95985 1.08411 1.74658 1.15617 0.96523 1.18017 1.84623 1.32581 1.11264 1.64794 1.24697 0.83466 0.98676 1.00644 1.21588 1.00752 0.90900 1.09716 1.20843 0.88156 0.81750 1.02503 1.88128 1.62440 1.17288 1.63018 1.23128 0.86074 0.97332 0.96045 1.21355 1.00180 0.81600 1.07359 0.91251 0.76869 0.90936 0.87356 0.83336 0.92571 0.88978 0.91177 0.91257 0.74634 0.87691 0.90030 0.91314 0.83809 0.84229 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 0.99 43.03 29.55 68.60 2.03 45.05 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.34 -19.27 9.68 84.04 0.81 -18.45 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -29.24 5.29 -306.98 -1.62 -30.86 16 10 C 0.44 20.63 7.82 87.66 0.69 21.31 16 11 O -0.62 -34.88 15.78 -3.09 -0.05 -34.93 16 12 C 0.07 2.22 6.17 85.56 0.53 2.75 16 13 N -0.68 -20.82 6.13 -517.93 -3.17 -23.99 16 14 C 0.06 1.22 5.80 86.30 0.50 1.72 16 15 C 0.13 2.86 5.93 86.38 0.51 3.37 16 16 N -0.70 -14.30 5.55 -465.51 -2.59 -16.89 16 17 C 0.60 14.63 7.85 86.93 0.68 15.31 16 18 O -0.55 -16.48 16.29 -3.68 -0.06 -16.54 16 19 C -0.02 -0.42 7.18 42.46 0.30 -0.12 16 20 N -0.35 -6.75 11.90 -48.98 -0.58 -7.33 16 21 O 0.14 2.18 11.17 81.74 0.91 3.10 16 22 C -0.01 -0.12 7.49 25.03 0.19 0.07 16 23 C -0.22 -4.03 6.15 -20.06 -0.12 -4.15 16 24 C 0.14 2.41 6.67 71.03 0.47 2.89 16 25 O -0.39 -5.37 10.76 -148.98 -1.60 -6.97 16 26 C 0.05 0.23 6.78 72.20 0.49 0.72 16 27 C -0.07 -0.21 6.54 29.99 0.20 -0.01 16 28 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 29 H 0.40 19.14 7.90 -92.70 -0.73 18.41 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.35 11.19 8.43 -89.70 -0.76 10.43 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.42 6.83 8.25 -92.71 -0.76 6.07 16 38 H 0.11 2.05 8.00 -2.39 -0.02 2.03 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 0.25 8.10 -2.39 -0.02 0.23 16 41 H 0.14 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.14 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 Total: -1.00 -76.32 373.91 -1.89 -78.21 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -1.16 Total: 34.98 kcal Atomic # 6 Polarization: 19.57 SS G_CDS: 5.72 Total: 25.29 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -7.68 Total: -128.19 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -0.80 Total: -55.34 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -76.32 -1.89 -78.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151693768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.187 kcal (2) G-P(sol) polarization free energy of solvation -76.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds