Wall clock time and date at job start Tue Mar 31 2020 20:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99948 * 2 1 4 4 H 1.48506 * 109.46805 * 269.99724 * 3 2 1 5 5 H 1.48503 * 109.46780 * 29.99364 * 3 2 1 6 6 H 1.48496 * 109.47301 * 149.99779 * 3 2 1 7 7 C 1.38953 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99559 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99855 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99783 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99663 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00111 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47069 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00057 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47379 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47289 * 180.02562 * 16 15 14 18 18 C 1.34774 * 120.00072 * 180.02562 * 17 16 15 19 19 O 1.21613 * 119.99938 * 359.97438 * 18 17 16 20 20 C 1.47286 * 119.99915 * 179.97438 * 18 17 16 21 21 C 1.36576 * 125.80887 * 179.97438 * 20 18 17 22 22 C 1.40060 * 106.92867 * 180.02562 * 21 20 18 23 23 C 1.36570 * 106.92668 * 359.97438 * 22 21 20 24 24 C 1.47285 * 125.80839 * 179.97438 * 23 22 21 25 25 N 1.34776 * 120.00401 * 179.97438 * 24 23 22 26 26 O 1.21618 * 119.99752 * 0.02562 * 24 23 22 27 27 O 1.34555 * 108.39040 * 359.73953 * 23 22 21 28 28 H 0.97001 * 119.99965 * 0.02562 * 1 2 3 29 29 H 0.96992 * 120.00300 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47079 * 59.99524 * 12 10 9 31 31 H 1.09007 * 109.46711 * 300.00035 * 12 10 9 32 32 H 1.00901 * 111.00063 * 303.94971 * 13 12 10 33 33 H 1.09001 * 109.46874 * 59.99638 * 14 13 12 34 34 H 1.09004 * 109.46970 * 299.99771 * 14 13 12 35 35 H 1.09001 * 109.46997 * 60.00222 * 15 14 13 36 36 H 1.08996 * 109.47452 * 299.99795 * 15 14 13 37 37 H 1.09001 * 109.47289 * 60.00050 * 16 15 14 38 38 H 1.09004 * 109.47261 * 300.00306 * 16 15 14 39 39 H 0.97001 * 119.99251 * 0.02562 * 17 16 15 40 40 H 1.07997 * 126.53031 * 359.96288 * 21 20 18 41 41 H 1.07997 * 126.53506 * 179.97438 * 22 21 20 42 42 H 0.96997 * 119.99854 * 0.02562 * 25 24 23 43 43 H 0.96999 * 120.00069 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4473 -3.4209 0.0001 12 6 5.5608 -2.3704 0.0022 13 7 6.0505 -3.7553 0.0014 14 6 7.5190 -3.7945 0.0031 15 6 7.9904 -5.2501 0.0028 16 6 9.5198 -5.2908 0.0039 17 7 9.9712 -6.6846 0.0030 18 6 11.2893 -6.9660 0.0043 19 8 12.1038 -6.0631 0.0057 20 6 11.7430 -8.3673 0.0039 21 6 13.0430 -8.7862 0.0046 22 6 13.0201 -10.1866 0.0034 23 6 11.7072 -10.5629 0.0025 24 6 11.2079 -11.9485 0.0006 25 7 9.8814 -12.1869 0.0005 26 8 11.9927 -12.8776 0.0000 27 8 10.9474 -9.4524 0.0091 28 1 -0.4850 0.8401 -0.0004 29 1 3.8648 -0.3632 0.0007 30 1 5.9235 -1.8569 0.8927 31 1 5.9248 -1.8561 -0.8873 32 1 5.6745 -4.2723 0.7820 33 1 7.8948 -3.2914 0.8940 34 1 7.8970 -3.2896 -0.8860 35 1 7.6146 -5.7535 -0.8880 36 1 7.6125 -5.7546 0.8920 37 1 9.8961 -4.7873 0.8944 38 1 9.8974 -4.7864 -0.8855 39 1 9.3214 -7.4048 0.0015 40 1 13.9210 -8.1575 0.0050 41 1 13.8772 -10.8436 0.0031 42 1 9.2555 -11.4459 0.0013 43 1 9.5526 -13.0994 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162188662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:42 Heat of formation + Delta-G solvation = -91.202946 kcal Electronic energy + Delta-G solvation = -26764.031789 eV Core-core repulsion = 22425.052714 eV Total energy + Delta-G solvation = -4338.979075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.44509 -40.13873 -39.70067 -38.55302 -36.80564 -35.20193 -34.56084 -33.95759 -33.64944 -31.97982 -31.64835 -30.59530 -27.54783 -25.70271 -24.48477 -23.25865 -22.48708 -21.94353 -21.61680 -20.75508 -19.46887 -19.29039 -18.43452 -18.19516 -17.49741 -17.28438 -16.70658 -16.35980 -15.93804 -15.57635 -15.37342 -15.09386 -14.93094 -14.80603 -14.42513 -14.22291 -13.86584 -13.76361 -13.73113 -13.57499 -13.26610 -12.98805 -12.42691 -12.25002 -12.02403 -11.82426 -11.62859 -11.25518 -11.23142 -11.10583 -10.81023 -10.76242 -10.62257 -10.47216 -10.00683 -9.74593 -9.60612 -9.36533 -8.65145 -8.25066 -8.19886 -6.34204 -3.85858 0.00056 1.29819 1.68881 2.47466 2.47688 2.56591 2.83395 2.99969 3.04720 3.12991 3.69888 3.93660 4.00172 4.07697 4.18978 4.31087 4.64005 4.66635 4.85976 4.87329 4.90154 4.94321 5.18080 5.19296 5.24412 5.31751 5.44887 5.56550 5.57134 5.70310 5.75757 5.82936 5.84697 5.89276 5.95102 6.06879 6.56219 6.85566 6.99770 7.41232 7.47241 7.48439 7.54898 8.11003 8.56304 8.91588 9.39061 9.78851 10.78823 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.001422 C = 0.001343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.651300 B =19689.050604 C =20840.615880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.307 4.307 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.566 6.566 12 C 0.048 3.952 13 N -0.669 5.669 14 C 0.062 3.938 15 C -0.131 4.131 16 C 0.119 3.881 17 N -0.714 5.714 18 C 0.600 3.400 19 O -0.510 6.510 20 C -0.038 4.038 21 C -0.132 4.132 22 C -0.126 4.126 23 C -0.051 4.051 24 C 0.610 3.390 25 N -0.839 5.839 26 O -0.516 6.516 27 O -0.154 6.154 28 H 0.274 0.726 29 H 0.371 0.629 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.351 0.649 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.408 0.592 40 H 0.171 0.829 41 H 0.171 0.829 42 H 0.409 0.591 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.631 -17.316 0.879 30.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.235 3.765 11 O -0.448 6.448 12 C -0.085 4.085 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.169 4.169 16 C -0.005 4.005 17 N -0.365 5.365 18 C 0.385 3.615 19 O -0.387 6.387 20 C -0.092 4.092 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.105 4.105 24 C 0.393 3.607 25 N -0.403 5.403 26 O -0.393 6.393 27 O -0.050 6.050 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.170 0.830 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.243 0.757 40 H 0.189 0.811 41 H 0.188 0.812 42 H 0.239 0.761 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 25.808 -17.763 0.204 31.331 hybrid contribution 0.089 1.385 0.908 1.658 sum 25.897 -16.378 1.112 30.661 Atomic orbital electron populations 1.69620 1.05658 1.27537 1.49230 1.25043 0.95493 0.97994 0.97579 0.86667 0.79738 0.84003 0.78933 1.19567 1.20167 1.19530 1.19434 0.79243 0.96650 1.48199 0.86280 1.42205 1.07549 1.06174 1.66984 1.19702 0.88187 0.84573 0.84077 1.90562 1.69441 1.30950 1.53824 1.21705 0.95068 0.90308 1.01399 1.60044 1.05753 1.12863 1.51523 1.21826 0.88754 0.95251 1.00942 1.21754 0.92841 0.98293 1.03991 1.21472 0.94835 0.80979 1.03183 1.45917 1.06443 1.10143 1.74001 1.16626 0.83057 0.84401 0.77425 1.90909 1.53579 1.44176 1.50043 1.22482 0.90196 0.86555 1.09945 1.22030 0.96974 0.94715 1.01568 1.22032 0.96535 0.95168 1.00960 1.22320 0.90789 0.86081 1.11342 1.16611 0.83072 0.84729 0.76265 1.43701 1.06669 1.13365 1.76541 1.90947 1.56052 1.42064 1.50188 1.84021 1.36940 1.13438 1.70574 0.91582 0.79659 0.93660 0.89382 0.82990 0.95099 0.90632 0.89863 0.91002 0.90778 0.90545 0.75722 0.81125 0.81173 0.76126 0.75498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 13.96 55.50 0.77 -24.67 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.05 27.74 -169.99 -4.71 14.34 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 7 C -0.31 -8.56 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 9 N -0.59 -13.77 5.09 -10.96 -0.06 -13.82 16 10 C 0.45 9.91 7.82 -10.98 -0.09 9.82 16 11 O -0.57 -14.83 15.78 5.55 0.09 -14.74 16 12 C 0.05 0.75 6.17 -4.98 -0.03 0.72 16 13 N -0.67 -9.39 6.13 -115.06 -0.70 -10.09 16 14 C 0.06 0.60 5.68 -3.83 -0.02 0.58 16 15 C -0.13 -0.97 5.59 -26.73 -0.15 -1.12 16 16 C 0.12 0.85 5.67 -4.04 -0.02 0.82 16 17 N -0.71 -4.85 5.55 -61.43 -0.34 -5.20 16 18 C 0.60 5.33 7.81 -12.58 -0.10 5.23 16 19 O -0.51 -6.12 16.86 5.27 0.09 -6.03 16 20 C -0.04 -0.29 7.14 -36.50 -0.26 -0.55 16 21 C -0.13 -0.94 10.60 -39.50 -0.42 -1.36 16 22 C -0.13 -0.86 10.60 -39.50 -0.42 -1.27 16 23 C -0.05 -0.36 7.14 -36.51 -0.26 -0.62 16 24 C 0.61 4.33 8.08 -12.58 -0.10 4.23 16 25 N -0.84 -2.89 8.87 30.40 0.27 -2.62 16 26 O -0.52 -5.40 17.70 5.26 0.09 -5.31 16 27 O -0.15 -1.00 10.14 4.31 0.04 -0.96 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.37 7.56 5.76 -40.82 -0.24 7.32 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.35 5.06 8.43 -39.29 -0.33 4.73 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.41 1.94 8.23 -40.82 -0.34 1.60 16 40 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.41 0.62 8.59 -40.82 -0.35 0.27 16 43 H 0.41 0.84 8.93 -40.82 -0.36 0.47 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -36.62 383.38 -6.20 -42.82 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.40 Total: 11.70 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -2.12 Total: 8.80 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.06 Total: -56.40 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: 0.31 Total: -27.04 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.62 -6.20 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162188662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.384 kcal (2) G-P(sol) polarization free energy of solvation -36.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds