Wall clock time and date at job start Tue Mar 31 2020 20:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99948 * 2 1 4 4 H 1.48506 * 109.46805 * 269.99724 * 3 2 1 5 5 H 1.48503 * 109.46780 * 29.99364 * 3 2 1 6 6 H 1.48496 * 109.47301 * 149.99779 * 3 2 1 7 7 C 1.38953 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99559 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99855 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99783 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99663 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00111 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47069 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00057 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47379 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47289 * 180.02562 * 16 15 14 18 18 C 1.34774 * 120.00072 * 180.02562 * 17 16 15 19 19 O 1.21613 * 119.99938 * 359.97438 * 18 17 16 20 20 C 1.47286 * 119.99915 * 179.97438 * 18 17 16 21 21 C 1.36576 * 125.80887 * 179.97438 * 20 18 17 22 22 C 1.40060 * 106.92867 * 180.02562 * 21 20 18 23 23 C 1.36570 * 106.92668 * 359.97438 * 22 21 20 24 24 C 1.47285 * 125.80839 * 179.97438 * 23 22 21 25 25 N 1.34776 * 120.00401 * 179.97438 * 24 23 22 26 26 O 1.21618 * 119.99752 * 0.02562 * 24 23 22 27 27 O 1.34555 * 108.39040 * 359.73953 * 23 22 21 28 28 H 0.97001 * 119.99965 * 0.02562 * 1 2 3 29 29 H 0.96992 * 120.00300 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47079 * 59.99524 * 12 10 9 31 31 H 1.09007 * 109.46711 * 300.00035 * 12 10 9 32 32 H 1.00901 * 111.00063 * 303.94971 * 13 12 10 33 33 H 1.09001 * 109.46874 * 59.99638 * 14 13 12 34 34 H 1.09004 * 109.46970 * 299.99771 * 14 13 12 35 35 H 1.09001 * 109.46997 * 60.00222 * 15 14 13 36 36 H 1.08996 * 109.47452 * 299.99795 * 15 14 13 37 37 H 1.09001 * 109.47289 * 60.00050 * 16 15 14 38 38 H 1.09004 * 109.47261 * 300.00306 * 16 15 14 39 39 H 0.97001 * 119.99251 * 0.02562 * 17 16 15 40 40 H 1.07997 * 126.53031 * 359.96288 * 21 20 18 41 41 H 1.07997 * 126.53506 * 179.97438 * 22 21 20 42 42 H 0.96997 * 119.99854 * 0.02562 * 25 24 23 43 43 H 0.96999 * 120.00069 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4473 -3.4209 0.0001 12 6 5.5608 -2.3704 0.0022 13 7 6.0505 -3.7553 0.0014 14 6 7.5190 -3.7945 0.0031 15 6 7.9904 -5.2501 0.0028 16 6 9.5198 -5.2908 0.0039 17 7 9.9712 -6.6846 0.0030 18 6 11.2893 -6.9660 0.0043 19 8 12.1038 -6.0631 0.0057 20 6 11.7430 -8.3673 0.0039 21 6 13.0430 -8.7862 0.0046 22 6 13.0201 -10.1866 0.0034 23 6 11.7072 -10.5629 0.0025 24 6 11.2079 -11.9485 0.0006 25 7 9.8814 -12.1869 0.0005 26 8 11.9927 -12.8776 0.0000 27 8 10.9474 -9.4524 0.0091 28 1 -0.4850 0.8401 -0.0004 29 1 3.8648 -0.3632 0.0007 30 1 5.9235 -1.8569 0.8927 31 1 5.9248 -1.8561 -0.8873 32 1 5.6745 -4.2723 0.7820 33 1 7.8948 -3.2914 0.8940 34 1 7.8970 -3.2896 -0.8860 35 1 7.6146 -5.7535 -0.8880 36 1 7.6125 -5.7546 0.8920 37 1 9.8961 -4.7873 0.8944 38 1 9.8974 -4.7864 -0.8855 39 1 9.3214 -7.4048 0.0015 40 1 13.9210 -8.1575 0.0050 41 1 13.8772 -10.8436 0.0031 42 1 9.2555 -11.4459 0.0013 43 1 9.5526 -13.0994 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162188662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:41 Heat of formation + Delta-G solvation = -125.348672 kcal Electronic energy + Delta-G solvation = -26765.512459 eV Core-core repulsion = 22425.052714 eV Total energy + Delta-G solvation = -4340.459744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.98494 -40.79601 -40.31870 -40.26271 -37.69779 -36.22451 -35.75185 -35.04826 -34.19962 -33.74845 -32.71649 -31.23430 -28.77394 -26.79244 -25.62512 -24.29303 -23.09545 -22.60330 -22.21816 -21.34975 -21.24513 -20.27407 -19.83855 -18.81507 -17.97331 -17.85828 -17.82483 -17.27533 -17.09099 -16.78394 -16.42739 -16.00193 -15.74450 -15.69070 -15.45262 -15.32225 -14.88068 -14.83704 -14.40144 -14.34696 -14.27996 -14.20391 -14.13677 -13.43505 -13.23254 -12.88696 -12.72137 -12.43129 -12.39768 -11.97242 -11.88933 -11.83526 -11.52108 -11.50432 -11.29646 -10.92851 -10.43375 -10.37971 -10.24088 -9.91725 -9.30907 -8.40741 -6.01749 -0.57467 0.73396 1.10551 1.31291 1.36860 1.45618 1.89542 1.91841 1.94259 1.96747 2.23864 2.37851 2.76291 3.15853 3.41353 3.47175 3.66971 3.84164 4.01216 4.12674 4.18662 4.21193 4.32678 4.36694 4.46344 4.58040 4.59631 4.70589 4.72317 4.80561 5.05155 5.08368 5.20008 5.27425 5.38547 5.53348 5.67985 5.91443 6.06198 6.16187 6.29540 6.42190 6.60497 6.86471 6.88804 7.00729 7.40736 7.97240 8.76818 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.001422 C = 0.001343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.651300 B =19689.050604 C =20840.615880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.230 1.230 7 C -0.330 4.330 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.447 3.553 11 O -0.615 6.615 12 C 0.062 3.938 13 N -0.688 5.688 14 C 0.063 3.937 15 C -0.119 4.119 16 C 0.124 3.876 17 N -0.703 5.703 18 C 0.602 3.398 19 O -0.546 6.546 20 C -0.049 4.049 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.055 4.055 24 C 0.609 3.391 25 N -0.818 5.818 26 O -0.555 6.555 27 O -0.145 6.145 28 H 0.279 0.721 29 H 0.390 0.610 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.345 0.655 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.418 0.582 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.421 0.579 43 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.131 -15.919 1.020 32.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.153 1.153 7 C -0.460 4.460 8 H 0.073 0.927 9 N -0.233 5.233 10 C 0.235 3.765 11 O -0.499 6.499 12 C -0.071 4.071 13 N -0.321 5.321 14 C -0.066 4.066 15 C -0.157 4.157 16 C 0.001 3.999 17 N -0.354 5.354 18 C 0.387 3.613 19 O -0.426 6.426 20 C -0.103 4.103 21 C -0.152 4.152 22 C -0.151 4.151 23 C -0.109 4.109 24 C 0.393 3.607 25 N -0.382 5.382 26 O -0.435 6.435 27 O -0.041 6.041 28 H 0.088 0.912 29 H 0.226 0.774 30 H 0.095 0.905 31 H 0.132 0.868 32 H 0.164 0.836 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.255 0.745 40 H 0.198 0.802 41 H 0.199 0.801 42 H 0.252 0.748 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 28.277 -16.382 0.343 32.682 hybrid contribution -0.774 0.785 0.857 1.396 sum 27.503 -15.597 1.200 31.641 Atomic orbital electron populations 1.69805 1.08170 1.29243 1.50285 1.26117 0.96451 1.02719 0.96028 0.85363 0.79514 0.76699 0.79922 1.18217 1.20128 1.15331 1.19019 0.81593 0.94929 1.50421 0.92662 1.42040 1.05783 1.07690 1.67779 1.21047 0.91125 0.83263 0.81045 1.90540 1.71456 1.32790 1.55158 1.21630 0.89322 0.92043 1.04077 1.60048 1.08439 1.11920 1.51692 1.21913 0.85925 0.96753 1.02035 1.21615 0.92825 0.97145 1.04138 1.21392 0.94411 0.80998 1.03130 1.45848 1.06108 1.10556 1.72868 1.16696 0.83222 0.84433 0.76934 1.90888 1.54500 1.45215 1.51968 1.22346 0.90549 0.86416 1.11026 1.22228 0.97187 0.94975 1.00768 1.22240 0.96971 0.95226 1.00635 1.22407 0.91069 0.86195 1.11234 1.16638 0.83757 0.84246 0.76063 1.43592 1.05661 1.14474 1.74508 1.90930 1.57172 1.42986 1.52400 1.84000 1.36511 1.13048 1.70510 0.91163 0.77439 0.90468 0.86771 0.83607 0.93554 0.89828 0.90255 0.90393 0.90742 0.90752 0.74470 0.80237 0.80114 0.74770 0.74448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.96 21.66 0.30 -55.48 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 3 Si 0.97 37.99 27.74 68.60 1.90 39.90 16 4 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 5 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.23 -7.52 6.52 99.48 0.65 -6.87 16 7 C -0.33 -19.10 10.16 84.04 0.85 -18.25 16 8 H 0.06 3.81 7.39 -2.91 -0.02 3.79 16 9 N -0.59 -27.15 5.09 -306.98 -1.56 -28.72 16 10 C 0.45 19.45 7.82 87.66 0.69 20.14 16 11 O -0.61 -33.13 15.78 -3.07 -0.05 -33.18 16 12 C 0.06 1.73 6.17 85.56 0.53 2.25 16 13 N -0.69 -17.68 6.13 -517.94 -3.17 -20.86 16 14 C 0.06 1.01 5.68 86.30 0.49 1.50 16 15 C -0.12 -1.48 5.59 30.59 0.17 -1.30 16 16 C 0.12 1.49 5.67 86.38 0.49 1.98 16 17 N -0.70 -8.31 5.55 -466.50 -2.59 -10.90 16 18 C 0.60 9.97 7.81 86.62 0.68 10.65 16 19 O -0.55 -12.66 16.86 -4.07 -0.07 -12.72 16 20 C -0.05 -0.70 7.14 24.26 0.17 -0.53 16 21 C -0.13 -1.73 10.60 22.32 0.24 -1.49 16 22 C -0.13 -1.65 10.60 22.32 0.24 -1.41 16 23 C -0.05 -0.71 7.14 24.26 0.17 -0.54 16 24 C 0.61 8.10 8.08 86.62 0.70 8.80 16 25 N -0.82 -4.44 8.87 -175.98 -1.56 -6.00 16 26 O -0.55 -11.46 17.70 -4.09 -0.07 -11.53 16 27 O -0.14 -1.69 10.14 -7.48 -0.08 -1.76 16 28 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.39 14.69 5.76 -92.71 -0.53 14.15 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 31 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 32 H 0.35 9.45 8.43 -89.69 -0.76 8.70 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.42 3.15 8.23 -92.71 -0.76 2.38 16 40 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.42 0.49 8.59 -92.71 -0.80 -0.31 16 43 H 0.42 1.10 8.93 -92.71 -0.83 0.27 16 Total: -1.00 -84.90 383.38 -3.68 -88.58 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -2.61 Total: 31.21 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 5.88 Total: 21.47 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -8.58 Total: -121.96 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -0.27 Total: -59.20 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.90 Total: 39.90 kcal Total: -84.90 -3.68 -88.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162188662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.769 kcal (2) G-P(sol) polarization free energy of solvation -84.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds