Wall clock time and date at job start Tue Mar 31 2020 20:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00173 * 2 1 4 4 H 1.48508 * 109.47330 * 269.72527 * 3 2 1 5 5 H 1.48500 * 109.47349 * 29.72753 * 3 2 1 6 6 H 1.48503 * 109.47408 * 149.72655 * 3 2 1 7 7 C 1.39942 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99723 * 351.92720 * 7 2 1 9 9 C 1.41437 * 120.00078 * 171.92244 * 7 2 1 10 10 C 1.40778 * 120.18113 * 323.21318 * 9 7 2 11 11 C 1.37710 * 120.04215 * 179.97438 * 10 9 7 12 12 C 1.38368 * 120.41157 * 0.04599 * 11 10 9 13 13 C 1.39880 * 120.35843 * 359.95249 * 12 11 10 14 14 C 1.47885 * 120.02648 * 180.29483 * 13 12 11 15 15 O 1.21548 * 120.00229 * 209.36173 * 14 13 12 16 16 N 1.34779 * 120.00098 * 29.36796 * 14 13 12 17 17 C 1.47158 * 120.97744 * 2.26441 * 16 14 13 18 18 C 1.53711 * 108.15734 * 129.43563 * 17 16 14 19 19 O 1.42967 * 109.14836 * 52.54006 * 18 17 16 20 20 C 1.42953 * 114.16454 * 297.28520 * 19 18 17 21 21 C 1.47150 * 120.98724 * 182.55310 * 16 14 13 22 22 H 1.08998 * 109.68353 * 110.78555 * 21 16 14 23 23 C 1.50703 * 109.67913 * 350.23343 * 21 16 14 24 24 C 1.38666 * 120.42125 * 80.82310 * 23 21 16 25 25 C 1.38629 * 118.42275 * 180.02562 * 24 23 21 26 26 C 1.38227 * 119.16193 * 0.02562 * 25 24 23 27 27 N 1.31859 * 120.76241 * 359.97438 * 26 25 24 28 28 C 1.31888 * 121.72338 * 359.70698 * 27 26 25 29 29 C 1.39031 * 119.94952 * 0.02562 * 13 12 11 30 30 H 0.96998 * 120.00212 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.98139 * 0.02562 * 10 9 7 32 32 H 1.08000 * 119.79391 * 180.02562 * 11 10 9 33 33 H 1.07997 * 119.82449 * 179.97438 * 12 11 10 34 34 H 1.09000 * 109.67901 * 249.21257 * 17 16 14 35 35 H 1.08999 * 109.68019 * 9.76983 * 17 16 14 36 36 H 1.08998 * 109.65853 * 292.56869 * 18 17 16 37 37 H 1.09002 * 109.48321 * 172.39805 * 18 17 16 38 38 H 1.09007 * 109.51648 * 302.65930 * 20 19 18 39 39 H 1.08999 * 109.51583 * 182.50654 * 20 19 18 40 40 H 1.08001 * 120.78641 * 359.97438 * 24 23 21 41 41 H 1.08000 * 120.41923 * 179.97438 * 25 24 23 42 42 H 1.07996 * 119.62022 * 180.02562 * 26 25 24 43 43 H 1.08001 * 119.61627 * 180.31407 * 28 27 26 44 44 H 1.08002 * 120.20390 * 180.02562 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4956 2.0431 -1.4001 5 1 1.4369 2.6543 0.6943 6 1 3.5369 1.4418 0.7058 7 6 2.0079 -1.2119 -0.0005 8 1 1.4759 -2.1427 0.1304 9 6 3.4118 -1.2179 -0.1727 10 6 4.0214 -0.2995 -1.0484 11 6 5.3885 -0.3075 -1.2134 12 6 6.1720 -1.2155 -0.5232 13 6 5.5842 -2.1355 0.3512 14 6 6.4292 -3.0983 1.0901 15 8 5.9814 -4.1838 1.4041 16 7 7.6958 -2.7721 1.4154 17 6 8.2438 -1.4458 1.0898 18 6 8.8750 -0.8623 2.3641 19 8 9.7941 -1.8120 2.9094 20 6 9.1904 -3.0407 3.3212 21 6 8.5735 -3.7338 2.1010 22 1 9.3640 -4.0569 1.4237 23 6 7.7682 -4.9267 2.5480 24 6 7.4551 -5.9379 1.6524 25 6 6.7118 -7.0159 2.1078 26 6 6.3098 -7.0463 3.4300 27 7 6.6260 -6.0665 4.2538 28 6 7.3369 -5.0289 3.8568 29 6 4.2053 -2.1403 0.5295 30 1 -0.4850 0.8400 0.0004 31 1 3.4166 0.4123 -1.5905 32 1 5.8520 0.3991 -1.8859 33 1 7.2433 -1.2136 -0.6601 34 1 9.0017 -1.5425 0.3124 35 1 7.4429 -0.7927 0.7432 36 1 8.0951 -0.6491 3.0951 37 1 9.4053 0.0579 2.1187 38 1 8.4116 -2.8355 4.0558 39 1 9.9475 -3.6881 3.7635 40 1 7.7818 -5.8866 0.6243 41 1 6.4493 -7.8212 1.4378 42 1 5.7309 -7.8827 3.7927 43 1 7.5807 -4.2478 4.5617 44 1 3.7472 -2.8486 1.2039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188675934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:39 Heat of formation + Delta-G solvation = 23.453919 kcal Electronic energy + Delta-G solvation = -29591.821161 eV Core-core repulsion = 25668.663245 eV Total energy + Delta-G solvation = -3923.157917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.09990 -39.41123 -38.46605 -37.38541 -34.88725 -34.07940 -33.26363 -31.94534 -30.65598 -30.16888 -29.66759 -27.61937 -25.71399 -24.74153 -23.82200 -22.97109 -22.39916 -21.27473 -20.78650 -19.40345 -17.84638 -17.21849 -16.64692 -16.40514 -16.19406 -16.05609 -15.70794 -15.45106 -15.22510 -14.87910 -14.62758 -14.17064 -14.08032 -13.72490 -13.39276 -13.23729 -13.04200 -12.89893 -12.84992 -12.64824 -12.20840 -12.12226 -11.79314 -11.72961 -11.37859 -11.20213 -11.04040 -10.69977 -10.57512 -10.35680 -10.15554 -9.86681 -9.81582 -9.33573 -9.29064 -9.14364 -8.52806 -8.18051 -7.97106 -7.76915 -6.99098 -4.64051 1.27516 1.54295 1.83024 2.37056 2.96691 2.99393 3.11133 3.16570 3.37977 3.58457 3.87132 4.05921 4.36944 4.38031 4.46708 4.63778 4.81143 4.88258 4.96620 5.06960 5.11022 5.12192 5.17919 5.23634 5.35291 5.46240 5.55413 5.63094 5.72771 5.76226 5.77607 5.88571 5.90149 6.22757 6.27694 6.38306 6.43020 6.50878 6.58142 6.85214 6.89246 6.91175 7.11830 7.22535 7.34041 7.49292 7.65664 7.83244 8.18341 8.22709 8.42069 8.47971 8.65262 10.03610 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012998 B = 0.003947 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.739736 B = 7092.441117 C = 8371.735667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.081 3.919 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.245 1.245 7 C -0.446 4.446 8 H 0.093 0.907 9 C 0.085 3.915 10 C -0.215 4.215 11 C -0.085 4.085 12 C -0.229 4.229 13 C -0.107 4.107 14 C 0.567 3.433 15 O -0.522 6.522 16 N -0.612 5.612 17 C 0.046 3.954 18 C 0.043 3.957 19 O -0.379 6.379 20 C 0.051 3.949 21 C 0.157 3.843 22 H 0.089 0.911 23 C -0.103 4.103 24 C -0.014 4.014 25 C -0.172 4.172 26 C 0.095 3.905 27 N -0.486 5.486 28 C 0.090 3.910 29 C -0.133 4.133 30 H 0.286 0.714 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.422 -3.516 3.051 18.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.169 1.169 7 C -0.475 4.475 8 H 0.111 0.889 9 C 0.082 3.918 10 C -0.234 4.234 11 C -0.104 4.104 12 C -0.249 4.249 13 C -0.110 4.110 14 C 0.359 3.641 15 O -0.399 6.399 16 N -0.347 5.347 17 C -0.076 4.076 18 C -0.034 4.034 19 O -0.297 6.297 20 C -0.027 4.027 21 C 0.053 3.947 22 H 0.107 0.893 23 C -0.106 4.106 24 C -0.041 4.041 25 C -0.192 4.192 26 C -0.063 4.063 27 N -0.194 5.194 28 C -0.066 4.066 29 C -0.153 4.153 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.133 0.867 34 H 0.093 0.907 35 H 0.156 0.844 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.125 0.875 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.166 0.834 43 H 0.163 0.837 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.796 -3.997 4.124 17.751 hybrid contribution 0.048 0.877 -1.225 1.508 sum 16.845 -3.120 2.899 17.375 Atomic orbital electron populations 1.69617 1.07890 1.30240 1.36048 1.26111 0.94897 1.01425 0.91249 0.86313 0.80725 0.79786 0.79299 1.19456 1.21713 1.16860 1.19500 0.90108 0.95559 1.42370 0.88866 1.17734 0.93769 0.90851 0.89434 1.21309 0.94504 1.04715 1.02866 1.20582 0.93850 0.97794 0.98134 1.20880 0.98324 1.00899 1.04779 1.19435 0.93953 0.97400 1.00235 1.18940 0.80184 0.87102 0.77867 1.90843 1.71996 1.22966 1.54135 1.48116 1.12127 1.14382 1.60098 1.23537 1.01172 0.85346 0.97544 1.23203 0.93395 0.92128 0.94715 1.87944 1.34636 1.25595 1.81572 1.23123 0.98415 0.86300 0.94812 1.20617 0.91635 0.87518 0.94908 0.89310 1.20258 0.99483 0.95348 0.95490 1.21057 0.93201 0.91695 0.98109 1.21892 1.00388 0.99580 0.97318 1.22558 0.96950 0.96451 0.90369 1.67594 1.11622 1.01821 1.38384 1.22391 0.94689 0.95987 0.93553 1.21277 0.90677 1.02195 1.01169 0.90328 0.87637 0.88028 0.86665 0.90728 0.84405 0.92290 0.87566 0.91922 0.87499 0.86132 0.85458 0.83448 0.83705 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.39 13.93 55.55 0.77 -20.62 16 2 C 0.08 2.07 5.49 -17.35 -0.10 1.98 16 3 Si 0.91 19.84 24.47 -169.99 -4.16 15.68 16 4 H -0.27 -5.59 6.65 56.52 0.38 -5.21 16 5 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.25 -5.36 6.75 56.52 0.38 -4.98 16 7 C -0.45 -11.81 9.59 -37.73 -0.36 -12.18 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 9 C 0.09 2.07 5.03 -106.87 -0.54 1.53 16 10 C -0.21 -4.75 6.99 -38.82 -0.27 -5.02 16 11 C -0.09 -1.61 10.01 -39.73 -0.40 -2.01 16 12 C -0.23 -4.08 7.43 -38.92 -0.29 -4.37 16 13 C -0.11 -2.14 5.52 -105.04 -0.58 -2.72 16 14 C 0.57 10.33 7.38 -12.31 -0.09 10.24 16 15 O -0.52 -10.52 11.63 5.32 0.06 -10.46 16 16 N -0.61 -8.75 3.01 -166.89 -0.50 -9.26 16 17 C 0.05 0.55 4.94 -3.31 -0.02 0.53 16 18 C 0.04 0.45 7.00 37.53 0.26 0.71 16 19 O -0.38 -4.31 10.74 -35.23 -0.38 -4.69 16 20 C 0.05 0.54 5.57 37.31 0.21 0.75 16 21 C 0.16 1.93 3.34 -68.57 -0.23 1.70 16 22 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 23 C -0.10 -1.44 3.22 -104.48 -0.34 -1.78 16 24 C -0.01 -0.20 7.20 -39.28 -0.28 -0.48 16 25 C -0.17 -2.30 10.10 -39.44 -0.40 -2.70 16 26 C 0.10 1.33 11.18 -17.54 -0.20 1.13 16 27 N -0.49 -7.62 10.36 -13.25 -0.14 -7.76 16 28 C 0.09 1.31 10.19 -17.55 -0.18 1.13 16 29 C -0.13 -3.07 9.34 -38.44 -0.36 -3.43 16 30 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 31 H 0.11 2.33 4.80 -52.49 -0.25 2.08 16 32 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.12 1.67 5.16 -52.49 -0.27 1.40 16 34 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 35 H 0.14 1.80 4.03 -51.93 -0.21 1.59 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.69 6.23 -51.93 -0.32 0.37 16 39 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.15 1.84 5.82 -52.49 -0.31 1.53 16 44 H 0.11 2.68 7.91 -52.49 -0.42 2.27 16 LS Contribution 347.26 15.07 5.23 5.23 Total: -1.00 -29.82 347.26 -8.44 -38.25 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.18 Total: 8.58 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -4.15 Total: -14.97 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.13 Total: -37.63 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.32 Total: -15.14 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.16 Total: 15.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.82 -8.44 -38.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188675934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.705 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds