Wall clock time and date at job start Tue Mar 31 2020 20:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00173 * 2 1 4 4 H 1.48508 * 109.47330 * 269.72527 * 3 2 1 5 5 H 1.48500 * 109.47349 * 29.72753 * 3 2 1 6 6 H 1.48503 * 109.47408 * 149.72655 * 3 2 1 7 7 C 1.39942 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99723 * 351.92720 * 7 2 1 9 9 C 1.41437 * 120.00078 * 171.92244 * 7 2 1 10 10 C 1.40778 * 120.18113 * 323.21318 * 9 7 2 11 11 C 1.37710 * 120.04215 * 179.97438 * 10 9 7 12 12 C 1.38368 * 120.41157 * 0.04599 * 11 10 9 13 13 C 1.39880 * 120.35843 * 359.95249 * 12 11 10 14 14 C 1.47885 * 120.02648 * 180.29483 * 13 12 11 15 15 O 1.21548 * 120.00229 * 209.36173 * 14 13 12 16 16 N 1.34779 * 120.00098 * 29.36796 * 14 13 12 17 17 C 1.47158 * 120.97744 * 2.26441 * 16 14 13 18 18 C 1.53711 * 108.15734 * 129.43563 * 17 16 14 19 19 O 1.42967 * 109.14836 * 52.54006 * 18 17 16 20 20 C 1.42953 * 114.16454 * 297.28520 * 19 18 17 21 21 C 1.47150 * 120.98724 * 182.55310 * 16 14 13 22 22 H 1.08998 * 109.68353 * 110.78555 * 21 16 14 23 23 C 1.50703 * 109.67913 * 350.23343 * 21 16 14 24 24 C 1.38666 * 120.42125 * 80.82310 * 23 21 16 25 25 C 1.38629 * 118.42275 * 180.02562 * 24 23 21 26 26 C 1.38227 * 119.16193 * 0.02562 * 25 24 23 27 27 N 1.31859 * 120.76241 * 359.97438 * 26 25 24 28 28 C 1.31888 * 121.72338 * 359.70698 * 27 26 25 29 29 C 1.39031 * 119.94952 * 0.02562 * 13 12 11 30 30 H 0.96998 * 120.00212 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.98139 * 0.02562 * 10 9 7 32 32 H 1.08000 * 119.79391 * 180.02562 * 11 10 9 33 33 H 1.07997 * 119.82449 * 179.97438 * 12 11 10 34 34 H 1.09000 * 109.67901 * 249.21257 * 17 16 14 35 35 H 1.08999 * 109.68019 * 9.76983 * 17 16 14 36 36 H 1.08998 * 109.65853 * 292.56869 * 18 17 16 37 37 H 1.09002 * 109.48321 * 172.39805 * 18 17 16 38 38 H 1.09007 * 109.51648 * 302.65930 * 20 19 18 39 39 H 1.08999 * 109.51583 * 182.50654 * 20 19 18 40 40 H 1.08001 * 120.78641 * 359.97438 * 24 23 21 41 41 H 1.08000 * 120.41923 * 179.97438 * 25 24 23 42 42 H 1.07996 * 119.62022 * 180.02562 * 26 25 24 43 43 H 1.08001 * 119.61627 * 180.31407 * 28 27 26 44 44 H 1.08002 * 120.20390 * 180.02562 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4956 2.0431 -1.4001 5 1 1.4369 2.6543 0.6943 6 1 3.5369 1.4418 0.7058 7 6 2.0079 -1.2119 -0.0005 8 1 1.4759 -2.1427 0.1304 9 6 3.4118 -1.2179 -0.1727 10 6 4.0214 -0.2995 -1.0484 11 6 5.3885 -0.3075 -1.2134 12 6 6.1720 -1.2155 -0.5232 13 6 5.5842 -2.1355 0.3512 14 6 6.4292 -3.0983 1.0901 15 8 5.9814 -4.1838 1.4041 16 7 7.6958 -2.7721 1.4154 17 6 8.2438 -1.4458 1.0898 18 6 8.8750 -0.8623 2.3641 19 8 9.7941 -1.8120 2.9094 20 6 9.1904 -3.0407 3.3212 21 6 8.5735 -3.7338 2.1010 22 1 9.3640 -4.0569 1.4237 23 6 7.7682 -4.9267 2.5480 24 6 7.4551 -5.9379 1.6524 25 6 6.7118 -7.0159 2.1078 26 6 6.3098 -7.0463 3.4300 27 7 6.6260 -6.0665 4.2538 28 6 7.3369 -5.0289 3.8568 29 6 4.2053 -2.1403 0.5295 30 1 -0.4850 0.8400 0.0004 31 1 3.4166 0.4123 -1.5905 32 1 5.8520 0.3991 -1.8859 33 1 7.2433 -1.2136 -0.6601 34 1 9.0017 -1.5425 0.3124 35 1 7.4429 -0.7927 0.7432 36 1 8.0951 -0.6491 3.0951 37 1 9.4053 0.0579 2.1187 38 1 8.4116 -2.8355 4.0558 39 1 9.9475 -3.6881 3.7635 40 1 7.7818 -5.8866 0.6243 41 1 6.4493 -7.8212 1.4378 42 1 5.7309 -7.8827 3.7927 43 1 7.5807 -4.2478 4.5617 44 1 3.7472 -2.8486 1.2039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188675934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:38 Heat of formation + Delta-G solvation = 4.033052 kcal Electronic energy + Delta-G solvation = -29592.663313 eV Core-core repulsion = 25668.663245 eV Total energy + Delta-G solvation = -3924.000069 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.24485 -40.60404 -39.65913 -38.87431 -36.07810 -35.61578 -34.59838 -33.00368 -32.32915 -31.75905 -30.67512 -28.67340 -27.37881 -25.87544 -25.04015 -24.22285 -23.48917 -22.55223 -22.36014 -20.74781 -19.39001 -18.28630 -17.94918 -17.71434 -17.50317 -17.28898 -16.76638 -16.65209 -16.35817 -16.12926 -15.94200 -15.50864 -15.28843 -15.18774 -14.63668 -14.52276 -14.43313 -14.37049 -14.12865 -13.87342 -13.75934 -13.26853 -13.09712 -12.90391 -12.79598 -12.57432 -12.44151 -12.08820 -11.97535 -11.75476 -11.59002 -11.36990 -11.12754 -11.03032 -10.38597 -10.24904 -9.74201 -9.56422 -9.50420 -9.31086 -8.85830 -6.60481 0.17305 0.21216 0.49251 0.69304 1.24628 1.39023 1.46960 1.77944 1.91831 2.10982 2.60811 2.75905 2.98392 3.33532 3.39310 3.48695 3.64428 3.80271 3.91126 3.95131 4.08986 4.11218 4.19911 4.25096 4.29615 4.35715 4.40514 4.53674 4.62101 4.67277 4.72787 4.81700 4.84604 4.86569 4.87680 4.91329 5.13678 5.21867 5.33182 5.37515 5.40730 5.56875 5.66140 5.82027 5.85375 6.04239 6.05613 6.25456 6.30660 6.61667 6.72952 7.10024 7.11586 8.23738 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012998 B = 0.003947 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.739736 B = 7092.441117 C = 8371.735667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.038 3.962 3 Si 0.971 3.029 4 H -0.245 1.245 5 H -0.282 1.282 6 H -0.244 1.244 7 C -0.494 4.494 8 H 0.042 0.958 9 C 0.067 3.933 10 C -0.216 4.216 11 C -0.083 4.083 12 C -0.189 4.189 13 C -0.111 4.111 14 C 0.561 3.439 15 O -0.550 6.550 16 N -0.603 5.603 17 C 0.040 3.960 18 C 0.044 3.956 19 O -0.381 6.381 20 C 0.055 3.945 21 C 0.158 3.842 22 H 0.112 0.888 23 C -0.107 4.107 24 C -0.027 4.027 25 C -0.178 4.178 26 C 0.080 3.920 27 N -0.514 5.514 28 C 0.075 3.925 29 C -0.161 4.161 30 H 0.293 0.707 31 H 0.108 0.892 32 H 0.152 0.848 33 H 0.166 0.834 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.047 0.953 37 H 0.138 0.862 38 H 0.055 0.945 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.149 0.851 42 H 0.168 0.832 43 H 0.157 0.843 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.577 -1.548 1.825 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.173 4.173 3 Si 0.793 3.207 4 H -0.169 1.169 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.065 3.935 10 C -0.235 4.235 11 C -0.100 4.100 12 C -0.207 4.207 13 C -0.114 4.114 14 C 0.352 3.648 15 O -0.430 6.430 16 N -0.337 5.337 17 C -0.080 4.080 18 C -0.033 4.033 19 O -0.299 6.299 20 C -0.023 4.023 21 C 0.055 3.945 22 H 0.129 0.871 23 C -0.110 4.110 24 C -0.053 4.053 25 C -0.198 4.198 26 C -0.078 4.078 27 N -0.223 5.223 28 C -0.081 4.081 29 C -0.181 4.181 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.170 0.830 33 H 0.183 0.817 34 H 0.124 0.876 35 H 0.145 0.855 36 H 0.066 0.934 37 H 0.156 0.844 38 H 0.073 0.927 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.186 0.814 43 H 0.174 0.826 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 21.999 -2.027 2.895 22.281 hybrid contribution -1.262 0.098 -0.831 1.515 sum 20.736 -1.929 2.064 20.928 Atomic orbital electron populations 1.69681 1.09334 1.31354 1.39062 1.26920 0.95596 1.04396 0.90431 0.85436 0.79279 0.75513 0.80477 1.16942 1.20901 1.16780 1.19418 0.91733 0.94478 1.46810 0.93933 1.17766 0.92824 0.92373 0.90538 1.21497 0.96382 1.03689 1.01955 1.21129 0.92328 0.98434 0.98144 1.21535 1.00697 0.97645 1.00850 1.19721 0.92884 0.98129 1.00639 1.18716 0.81431 0.86395 0.78224 1.90845 1.72989 1.23979 1.55170 1.48122 1.10865 1.15742 1.58938 1.23725 1.01345 0.83573 0.99397 1.23301 0.93458 0.92964 0.93611 1.87961 1.34794 1.25663 1.81497 1.23167 0.98855 0.86476 0.93779 1.20848 0.91176 0.86598 0.95914 0.87082 1.20417 0.99474 0.95956 0.95141 1.21317 0.93365 0.92007 0.98634 1.22203 0.99887 1.00200 0.97487 1.22988 0.97164 0.96827 0.90783 1.67586 1.12537 1.02721 1.39459 1.22687 0.94794 0.96144 0.94447 1.21136 0.92559 1.02460 1.01959 0.89714 0.87411 0.82992 0.81736 0.87569 0.85486 0.93441 0.84420 0.92725 0.85132 0.85251 0.83332 0.81438 0.82568 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.81 13.93 21.82 0.30 -48.50 16 2 C 0.04 2.08 5.49 85.26 0.47 2.54 16 3 Si 0.97 40.97 24.47 68.60 1.68 42.65 16 4 H -0.24 -9.31 6.65 99.48 0.66 -8.65 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.24 -10.11 6.75 99.48 0.67 -9.44 16 7 C -0.49 -28.44 9.59 23.47 0.23 -28.22 16 8 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16 9 C 0.07 3.38 5.03 -21.32 -0.11 3.28 16 10 C -0.22 -9.16 6.99 22.77 0.16 -9.00 16 11 C -0.08 -2.70 10.01 22.18 0.22 -2.48 16 12 C -0.19 -5.78 7.43 22.70 0.17 -5.61 16 13 C -0.11 -4.25 5.52 -20.14 -0.11 -4.37 16 14 C 0.56 19.57 7.38 86.80 0.64 20.21 16 15 O -0.55 -22.19 11.63 -3.87 -0.04 -22.23 16 16 N -0.60 -15.13 3.01 -800.19 -2.41 -17.54 16 17 C 0.04 0.74 4.94 86.49 0.43 1.16 16 18 C 0.04 0.70 7.00 72.22 0.51 1.21 16 19 O -0.38 -6.90 10.74 -148.98 -1.60 -8.50 16 20 C 0.05 0.97 5.57 72.08 0.40 1.37 16 21 C 0.16 3.36 3.34 44.22 0.15 3.51 16 22 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 23 C -0.11 -2.84 3.22 -19.77 -0.06 -2.90 16 24 C -0.03 -0.72 7.20 22.47 0.16 -0.56 16 25 C -0.18 -4.69 10.10 22.36 0.23 -4.46 16 26 C 0.08 2.24 11.18 84.69 0.95 3.19 16 27 N -0.51 -16.25 10.36 -195.84 -2.03 -18.28 16 28 C 0.07 2.15 10.19 84.67 0.86 3.01 16 29 C -0.16 -7.73 9.34 23.01 0.21 -7.51 16 30 H 0.29 14.76 8.30 -92.71 -0.77 13.99 16 31 H 0.11 4.52 4.80 -2.91 -0.01 4.50 16 32 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.17 3.53 5.16 -2.91 -0.02 3.51 16 34 H 0.11 1.39 8.00 -2.39 -0.02 1.37 16 35 H 0.13 2.57 4.03 -2.39 -0.01 2.56 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.08 6.23 -2.38 -0.01 1.06 16 39 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 41 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 42 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.16 3.88 5.82 -2.91 -0.02 3.86 16 44 H 0.08 4.22 7.91 -2.91 -0.02 4.20 16 Total: -1.00 -72.03 347.26 2.36 -69.68 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.96 Total: 28.36 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: 5.50 Total: -25.62 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -4.14 Total: -84.33 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.65 Total: -30.73 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.68 Total: 42.65 kcal Total: -72.03 2.36 -69.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188675934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.711 kcal (2) G-P(sol) polarization free energy of solvation -72.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds