Wall clock time and date at job start Tue Mar 31 2020 20:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86792 * 120.00210 * 2 1 4 4 H 1.48502 * 109.47245 * 274.99458 * 3 2 1 5 5 H 1.48506 * 109.47463 * 34.99644 * 3 2 1 6 6 H 1.48502 * 109.47509 * 154.99544 * 3 2 1 7 7 C 1.39935 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99960 * 150.83497 * 7 2 1 9 9 C 1.41442 * 120.00265 * 330.83756 * 7 2 1 10 10 C 1.40786 * 120.17575 * 345.43449 * 9 7 2 11 11 C 1.37704 * 120.03992 * 180.27541 * 10 9 7 12 12 C 1.38371 * 120.41126 * 359.44985 * 11 10 9 13 13 C 1.39881 * 120.35990 * 0.27535 * 12 11 10 14 14 C 1.47883 * 120.02816 * 180.02562 * 13 12 11 15 15 O 1.21549 * 119.99974 * 147.91780 * 14 13 12 16 16 N 1.34777 * 119.99794 * 327.92596 * 14 13 12 17 17 C 1.47153 * 120.98506 * 4.79221 * 16 14 13 18 18 C 1.53293 * 108.38285 * 230.51600 * 17 16 14 19 19 O 1.42958 * 109.22664 * 307.69672 * 18 17 16 20 20 C 1.42961 * 114.16458 * 62.57929 * 19 18 17 21 21 C 1.47160 * 120.97948 * 184.51504 * 16 14 13 22 22 H 1.08999 * 109.68002 * 249.20613 * 21 16 14 23 23 C 1.50697 * 109.67928 * 9.76058 * 21 16 14 24 24 C 1.38674 * 120.41898 * 250.27551 * 23 21 16 25 25 C 1.38625 * 118.42333 * 180.02562 * 24 23 21 26 26 C 1.38228 * 119.16118 * 359.97438 * 25 24 23 27 27 N 1.31861 * 120.76164 * 359.97438 * 26 25 24 28 28 C 1.31883 * 121.72670 * 359.71368 * 27 26 25 29 29 C 1.39035 * 119.94527 * 0.02562 * 13 12 11 30 30 H 0.97001 * 119.99389 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.98044 * 359.97438 * 10 9 7 32 32 H 1.08005 * 119.79584 * 179.72867 * 11 10 9 33 33 H 1.08009 * 119.81914 * 180.30502 * 12 11 10 34 34 H 1.08994 * 109.67995 * 350.23844 * 17 16 14 35 35 H 1.09004 * 109.68082 * 110.79456 * 17 16 14 36 36 H 1.09000 * 109.51407 * 67.62662 * 18 17 16 37 37 H 1.09007 * 109.51070 * 187.72103 * 18 17 16 38 38 H 1.08998 * 109.51023 * 57.35242 * 20 19 18 39 39 H 1.09003 * 109.51469 * 177.44556 * 20 19 18 40 40 H 1.08000 * 120.78668 * 359.97438 * 24 23 21 41 41 H 1.07999 * 120.42342 * 179.97438 * 25 24 23 42 42 H 1.07997 * 119.62273 * 180.02562 * 26 25 24 43 43 H 1.07999 * 119.61853 * 180.31125 * 28 27 26 44 44 H 1.08000 * 120.19670 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3843 2.1073 -1.3948 5 1 1.4966 2.6199 0.8030 6 1 3.5887 1.4119 0.5918 7 6 2.0079 -1.2119 0.0005 8 1 2.9853 -1.2714 -0.4552 9 6 1.4352 -2.3589 0.5979 10 6 0.3223 -2.2317 1.4508 11 6 -0.2296 -3.3497 2.0354 12 6 0.2958 -4.6044 1.7817 13 6 1.3976 -4.7511 0.9325 14 6 1.9528 -6.0956 0.6660 15 8 2.4547 -6.3429 -0.4130 16 7 1.9021 -7.0467 1.6196 17 6 1.2076 -6.8052 2.8943 18 6 2.1536 -7.1838 4.0395 19 8 2.6452 -8.5090 3.8255 20 6 3.4204 -8.6604 2.6339 21 6 2.5345 -8.3595 1.4144 22 1 1.7657 -9.1261 1.3175 23 6 3.3794 -8.3264 0.1670 24 6 2.9898 -9.0283 -0.9637 25 6 3.7985 -8.9693 -2.0881 26 6 4.9578 -8.2177 -2.0454 27 7 5.2965 -7.5620 -0.9526 28 6 4.5485 -7.5905 0.1332 29 6 1.9704 -3.6317 0.3393 30 1 -0.4849 0.8401 -0.0004 31 1 -0.0958 -1.2561 1.6506 32 1 -1.0805 -3.2471 2.6925 33 1 -0.1477 -5.4754 2.2415 34 1 0.9397 -5.7516 2.9725 35 1 0.3075 -7.4180 2.9438 36 1 2.9899 -6.4853 4.0670 37 1 1.6142 -7.1431 4.9859 38 1 4.2613 -7.9674 2.6563 39 1 3.7929 -9.6828 2.5693 40 1 2.0785 -9.6078 -0.9680 41 1 3.5262 -9.5038 -2.9862 42 1 5.5931 -8.1662 -2.9172 43 1 4.8560 -7.0365 1.0078 44 1 2.8215 -3.7402 -0.3167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188675935.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:44 Heat of formation + Delta-G solvation = 19.695086 kcal Electronic energy + Delta-G solvation = -29459.488735 eV Core-core repulsion = 25536.167823 eV Total energy + Delta-G solvation = -3923.320912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.96135 -39.31471 -38.26198 -37.09693 -34.76698 -34.17677 -33.17843 -31.84542 -30.14658 -29.74383 -29.56239 -27.48346 -25.73625 -24.58313 -23.58693 -23.00878 -22.32079 -21.01256 -20.73313 -19.21617 -17.74792 -17.02026 -16.49609 -16.40838 -16.12844 -15.80129 -15.45981 -15.33453 -15.05987 -14.89608 -14.48756 -14.07244 -13.95190 -13.56443 -13.30182 -13.10116 -12.91007 -12.82831 -12.66632 -12.41000 -12.07782 -11.82066 -11.66893 -11.40483 -11.22436 -11.10823 -10.91365 -10.80069 -10.42481 -10.39034 -10.14843 -9.75401 -9.61004 -9.31845 -9.20871 -9.14888 -8.39844 -8.11634 -7.73508 -7.59799 -7.03710 -4.48645 1.33843 1.56191 2.17939 2.64909 2.97839 2.99365 3.09590 3.12860 3.60532 3.68206 3.80047 4.08940 4.37522 4.45563 4.63596 4.76367 4.86311 5.00389 5.04866 5.11740 5.20313 5.26193 5.33868 5.39050 5.46814 5.59385 5.63696 5.74305 5.82764 5.91412 5.95405 6.07541 6.16724 6.29442 6.40052 6.58761 6.79851 6.82465 6.91649 6.95488 6.98155 7.04929 7.26854 7.52457 7.68034 7.79164 7.84162 8.06310 8.25020 8.41798 8.64201 8.69018 8.75337 9.90120 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.003661 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.974401 B = 7646.950965 C = 9024.058647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.082 3.918 3 Si 0.904 3.096 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.103 3.897 10 C -0.166 4.166 11 C -0.101 4.101 12 C -0.252 4.252 13 C -0.102 4.102 14 C 0.566 3.434 15 O -0.524 6.524 16 N -0.613 5.613 17 C 0.032 3.968 18 C 0.044 3.956 19 O -0.381 6.381 20 C 0.056 3.944 21 C 0.155 3.845 22 H 0.085 0.915 23 C -0.091 4.091 24 C -0.067 4.067 25 C -0.167 4.167 26 C 0.088 3.912 27 N -0.479 5.479 28 C 0.126 3.874 29 C -0.168 4.168 30 H 0.285 0.715 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.154 0.846 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.148 0.852 43 H 0.140 0.860 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.704 -13.319 5.059 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.482 4.482 8 H 0.101 0.899 9 C 0.100 3.900 10 C -0.185 4.185 11 C -0.119 4.119 12 C -0.271 4.271 13 C -0.105 4.105 14 C 0.359 3.641 15 O -0.401 6.401 16 N -0.349 5.349 17 C -0.089 4.089 18 C -0.033 4.033 19 O -0.299 6.299 20 C -0.022 4.022 21 C 0.051 3.949 22 H 0.103 0.897 23 C -0.094 4.094 24 C -0.093 4.093 25 C -0.187 4.187 26 C -0.069 4.069 27 N -0.188 5.188 28 C -0.032 4.032 29 C -0.188 4.188 30 H 0.096 0.904 31 H 0.139 0.861 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.170 0.830 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.165 0.835 43 H 0.157 0.843 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.492 -12.951 4.566 14.170 hybrid contribution -0.750 0.539 -0.313 0.975 sum 2.742 -12.412 4.253 13.404 Atomic orbital electron populations 1.69888 1.08050 1.29962 1.31341 1.25993 0.94507 1.01818 0.91619 0.86362 0.81263 0.80285 0.79377 1.19306 1.19749 1.18021 1.19649 1.03520 0.92943 1.32041 0.89887 1.17530 0.90977 0.91368 0.90136 1.21492 0.99569 0.97893 0.99558 1.20605 0.98566 0.93061 0.99679 1.20765 1.01988 0.96973 1.07379 1.19223 0.99006 0.90763 1.01532 1.19043 0.77592 0.84573 0.82940 1.90784 1.45256 1.80196 1.23846 1.48171 1.56238 1.12988 1.17471 1.23748 0.95009 1.07743 0.82447 1.23122 0.97567 0.83953 0.98700 1.87931 1.70518 1.29932 1.41515 1.23103 0.92769 1.02721 0.83563 1.20718 0.94651 0.86574 0.92910 0.89675 1.20251 0.96204 0.97855 0.95040 1.21135 0.98322 0.97813 0.92063 1.21912 0.96497 1.01511 0.98750 1.22547 0.95104 0.93301 0.95912 1.67577 1.33048 1.18354 0.99782 1.22216 0.90830 0.94272 0.95903 1.20966 1.03339 0.91119 1.03366 0.90409 0.86054 0.88830 0.86958 0.82965 0.91099 0.92340 0.87668 0.92182 0.87777 0.85777 0.85458 0.83488 0.84300 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.77 11.05 55.55 0.61 -18.16 16 2 C 0.08 1.96 4.97 -17.34 -0.09 1.88 16 3 Si 0.90 17.75 29.64 -169.99 -5.04 12.71 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.45 -11.68 9.01 -37.73 -0.34 -12.02 16 8 H 0.08 2.09 7.99 -52.49 -0.42 1.68 16 9 C 0.10 2.64 5.65 -106.87 -0.60 2.03 16 10 C -0.17 -4.02 8.81 -38.81 -0.34 -4.36 16 11 C -0.10 -2.13 10.01 -39.73 -0.40 -2.53 16 12 C -0.25 -5.01 7.52 -38.92 -0.29 -5.30 16 13 C -0.10 -2.24 5.58 -105.04 -0.59 -2.82 16 14 C 0.57 11.27 7.10 -12.31 -0.09 11.18 16 15 O -0.52 -11.54 12.22 5.32 0.07 -11.48 16 16 N -0.61 -9.61 3.01 -166.90 -0.50 -10.11 16 17 C 0.03 0.42 5.11 -3.53 -0.02 0.40 16 18 C 0.04 0.50 6.98 37.31 0.26 0.76 16 19 O -0.38 -4.65 10.74 -35.23 -0.38 -5.03 16 20 C 0.06 0.65 6.13 37.53 0.23 0.88 16 21 C 0.16 2.09 3.33 -68.36 -0.23 1.86 16 22 H 0.09 1.05 7.98 -51.93 -0.41 0.64 16 23 C -0.09 -1.35 2.80 -104.48 -0.29 -1.65 16 24 C -0.07 -0.93 9.27 -39.28 -0.36 -1.30 16 25 C -0.17 -2.22 10.11 -39.44 -0.40 -2.62 16 26 C 0.09 1.28 11.18 -17.54 -0.20 1.08 16 27 N -0.48 -8.16 10.36 -13.25 -0.14 -8.29 16 28 C 0.13 2.07 8.31 -17.55 -0.15 1.92 16 29 C -0.17 -4.14 9.34 -38.44 -0.36 -4.49 16 30 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 31 H 0.12 3.02 5.88 -52.49 -0.31 2.71 16 32 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.11 1.87 5.07 -52.48 -0.27 1.61 16 34 H 0.15 2.20 3.50 -54.97 -0.19 2.01 16 35 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.71 6.63 -51.93 -0.34 0.36 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.12 1.46 8.03 -52.49 -0.42 1.04 16 41 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.15 1.72 8.06 -52.49 -0.42 1.29 16 43 H 0.14 2.20 6.90 -52.49 -0.36 1.84 16 44 H 0.10 2.57 7.95 -52.49 -0.42 2.15 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -29.70 354.53 -9.52 -39.23 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -5.24 Total: 10.89 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -4.25 Total: -15.10 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.03 Total: -36.56 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.31 Total: -16.50 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.04 Total: 12.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.70 -9.52 -39.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188675935.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.922 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds