Wall clock time and date at job start Tue Mar 31 2020 20:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 120.00496 * 2 1 4 4 H 1.48498 * 109.46977 * 270.00160 * 3 2 1 5 5 H 1.48505 * 109.46953 * 29.99486 * 3 2 1 6 6 H 1.48495 * 109.47614 * 149.99749 * 3 2 1 7 7 C 1.39943 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00060 * 197.73216 * 7 2 1 9 9 C 1.41439 * 119.99986 * 17.72758 * 7 2 1 10 10 C 1.40786 * 120.18077 * 204.35508 * 9 7 2 11 11 C 1.37711 * 120.04114 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41286 * 359.97438 * 11 10 9 13 13 C 1.39884 * 120.36093 * 359.97438 * 12 11 10 14 14 C 1.47882 * 120.02877 * 179.97438 * 13 12 11 15 15 O 1.21540 * 120.00316 * 180.02562 * 14 13 12 16 16 N 1.34784 * 119.99828 * 0.02562 * 14 13 12 17 17 C 1.46494 * 119.99747 * 179.72127 * 16 14 13 18 18 H 1.08996 * 109.69115 * 34.73555 * 17 16 14 19 19 C 1.53325 * 109.68956 * 155.27255 * 17 16 14 20 20 C 1.52715 * 108.43750 * 189.52373 * 19 17 16 21 21 C 1.50734 * 110.59729 * 308.76112 * 20 19 17 22 22 N 1.32795 * 117.48974 * 197.83499 * 21 20 19 23 23 C 1.31903 * 122.34592 * 180.29108 * 22 21 20 24 24 O 1.35675 * 119.76345 * 180.02562 * 23 22 21 25 25 C 1.38927 * 120.46648 * 0.02562 * 23 22 21 26 26 C 1.38152 * 118.78930 * 359.86275 * 25 23 22 27 27 C 1.37485 * 122.35412 * 17.90653 * 21 20 19 28 28 C 1.50516 * 122.83435 * 359.23751 * 27 21 20 29 29 C 1.39034 * 119.94645 * 0.28170 * 13 12 11 30 30 H 0.97008 * 119.99941 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.97387 * 0.02562 * 10 9 7 32 32 H 1.07998 * 119.79033 * 179.97438 * 11 10 9 33 33 H 1.08004 * 119.82110 * 180.02562 * 12 11 10 34 34 H 0.96993 * 119.99830 * 359.97438 * 16 14 13 35 35 H 1.09005 * 109.64472 * 309.20992 * 19 17 16 36 36 H 1.09007 * 109.64230 * 69.63050 * 19 17 16 37 37 H 1.08998 * 109.25105 * 69.05625 * 20 19 17 38 38 H 1.09007 * 109.24955 * 188.47669 * 20 19 17 39 39 H 0.96695 * 114.00013 * 270.00307 * 24 23 22 40 40 H 1.07994 * 120.60880 * 179.88259 * 25 23 22 41 41 H 1.07995 * 120.51847 * 179.97438 * 26 25 23 42 42 H 1.09001 * 109.25747 * 257.40556 * 28 27 21 43 43 H 1.08998 * 109.26483 * 137.95931 * 28 27 21 44 44 H 1.08001 * 120.20124 * 179.70618 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0494 -1.2341 0.2854 9 6 1.3510 -2.4079 -0.3719 10 6 1.8273 -3.6500 0.0889 11 6 1.1859 -4.8127 -0.2760 12 6 0.0715 -4.7706 -1.0951 13 6 -0.4169 -3.5457 -1.5618 14 6 -1.6082 -3.5092 -2.4373 15 8 -2.0319 -2.4447 -2.8430 16 7 -2.2240 -4.6564 -2.7855 17 6 -3.4077 -4.6198 -3.6478 18 1 -3.3102 -3.8103 -4.3711 19 6 -3.5514 -5.9566 -4.3849 20 6 -4.6412 -5.8091 -5.4445 21 6 -5.8979 -5.2401 -4.8371 22 7 -7.0284 -5.3859 -5.5184 23 6 -8.1819 -4.9206 -5.0794 24 8 -9.3056 -5.0997 -5.8184 25 6 -8.2544 -4.2485 -3.8657 26 6 -7.0983 -4.0800 -3.1284 27 6 -5.9003 -4.5891 -3.6261 28 6 -4.6579 -4.4032 -2.7971 29 6 0.2223 -2.3630 -1.2071 30 1 -0.4850 0.8401 -0.0004 31 1 2.6963 -3.6910 0.7288 32 1 1.5550 -5.7634 0.0795 33 1 -0.4244 -5.6883 -1.3749 34 1 -1.8856 -5.5059 -2.4621 35 1 -2.6068 -6.2142 -4.8641 36 1 -3.8279 -6.7377 -3.6766 37 1 -4.2889 -5.1429 -6.2320 38 1 -4.8602 -6.7871 -5.8733 39 1 -9.4804 -4.3864 -6.4474 40 1 -9.1973 -3.8649 -3.5050 41 1 -7.1225 -3.5616 -2.1813 42 1 -4.6628 -5.1204 -1.9762 43 1 -4.6451 -3.3921 -2.3902 44 1 -0.1485 -1.4154 -1.5690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188682587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:48 Heat of formation + Delta-G solvation = -35.123470 kcal Electronic energy + Delta-G solvation = -27750.447431 eV Core-core repulsion = 23824.749408 eV Total energy + Delta-G solvation = -3925.698023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.06166 -39.44338 -38.07593 -37.07351 -35.96309 -33.83158 -33.62546 -32.92124 -30.33672 -30.18954 -29.47449 -28.41956 -25.35639 -24.44691 -23.60719 -22.83465 -22.07510 -21.00649 -20.25997 -19.55559 -18.69244 -17.75160 -17.22501 -16.43250 -16.04716 -15.91842 -15.31154 -15.06096 -14.86831 -14.69998 -14.15746 -14.00731 -13.78208 -13.69174 -13.41716 -13.21953 -13.07465 -12.73136 -12.52352 -12.50361 -12.19867 -11.89490 -11.71118 -11.56353 -11.22598 -11.15145 -11.06184 -11.01987 -10.74237 -10.52518 -10.05136 -9.90685 -9.72192 -9.61626 -9.24983 -9.06760 -8.83907 -8.72069 -7.66872 -7.55441 -6.83335 -4.44536 0.76821 0.97467 2.16783 2.78528 3.05705 3.08777 3.13168 3.17759 3.47044 3.57766 3.81418 3.89439 4.23481 4.49391 4.58135 4.61888 4.68179 4.71260 4.93072 5.06388 5.17515 5.29263 5.35443 5.40569 5.57585 5.60116 5.64653 5.68559 5.75484 5.82430 5.96125 6.03944 6.14434 6.16214 6.24357 6.32033 6.68915 6.81407 6.95719 6.98690 7.18088 7.21726 7.34758 7.66752 7.70749 7.72377 7.89310 8.05345 8.15788 8.47517 8.77146 8.80168 8.90226 10.11296 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.002385 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.846913 B =11735.496967 C =12788.033363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.566 3.434 15 O -0.544 6.544 16 N -0.733 5.733 17 C 0.148 3.852 18 H 0.092 0.908 19 C -0.127 4.127 20 C -0.064 4.064 21 C 0.155 3.845 22 N -0.507 5.507 23 C 0.307 3.693 24 O -0.484 6.484 25 C -0.188 4.188 26 C -0.059 4.059 27 C -0.122 4.122 28 C -0.090 4.090 29 C -0.093 4.093 30 H 0.284 0.716 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.400 0.600 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.399 0.601 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.354 -8.454 -7.502 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.095 3.905 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.132 4.132 14 C 0.356 3.644 15 O -0.422 6.422 16 N -0.386 5.386 17 C 0.042 3.958 18 H 0.110 0.890 19 C -0.166 4.166 20 C -0.102 4.102 21 C 0.020 3.980 22 N -0.226 5.226 23 C 0.126 3.874 24 O -0.291 6.291 25 C -0.209 4.209 26 C -0.085 4.085 27 C -0.125 4.125 28 C -0.129 4.129 29 C -0.113 4.113 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.236 0.764 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.256 0.744 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.959 -8.449 -8.260 17.538 hybrid contribution 0.165 1.157 0.793 1.412 sum -12.795 -7.292 -7.467 16.512 Atomic orbital electron populations 1.69788 1.07570 1.29758 1.33606 1.25966 0.94782 1.01561 0.92294 0.86269 0.80383 0.80409 0.79461 1.19132 1.20223 1.18565 1.19603 0.98195 0.91020 1.39999 0.90058 1.17613 0.91242 0.92465 0.89144 1.21105 1.03435 0.92773 1.05817 1.20437 0.96043 0.96728 0.98413 1.20338 1.01251 0.94609 1.07622 1.19462 0.96501 0.95301 1.01900 1.18872 0.83199 0.82870 0.79415 1.90696 1.66490 1.29906 1.55121 1.45980 1.29936 1.09861 1.52778 1.20780 0.84422 0.98305 0.92257 0.89034 1.21878 0.99273 0.97268 0.98137 1.20329 0.89699 1.02198 0.97977 1.20767 0.92416 0.94259 0.90520 1.66950 0.98353 1.20459 1.36847 1.18993 0.85031 0.93413 0.89968 1.84780 1.37951 1.50695 1.55698 1.22058 1.00110 1.01906 0.96804 1.21584 0.91168 0.96238 0.99530 1.20477 0.96328 0.99616 0.96058 1.20885 0.90511 1.03893 0.97642 1.21648 0.96429 0.96485 0.96728 0.90451 0.88631 0.88907 0.89200 0.76424 0.89712 0.90763 0.89247 0.89116 0.74416 0.84219 0.84119 0.89810 0.89430 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.37 10.95 55.55 0.61 -19.76 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.52 29.59 -169.99 -5.03 13.49 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.46 -11.86 9.05 -37.73 -0.34 -12.20 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.10 2.54 5.57 -106.87 -0.60 1.94 16 10 C -0.21 -4.91 9.78 -38.81 -0.38 -5.29 16 11 C -0.10 -2.02 10.01 -39.73 -0.40 -2.42 16 12 C -0.22 -4.38 9.55 -38.92 -0.37 -4.75 16 13 C -0.13 -2.91 5.87 -105.04 -0.62 -3.53 16 14 C 0.57 11.64 7.75 -12.31 -0.10 11.55 16 15 O -0.54 -12.96 15.99 5.33 0.09 -12.88 16 16 N -0.73 -11.02 5.04 -54.69 -0.28 -11.30 16 17 C 0.15 1.89 2.49 -67.88 -0.17 1.72 16 18 H 0.09 1.36 7.53 -51.93 -0.39 0.97 16 19 C -0.13 -1.20 5.46 -26.71 -0.15 -1.35 16 20 C -0.06 -0.62 5.91 -28.01 -0.17 -0.78 16 21 C 0.16 1.84 6.62 -82.43 -0.55 1.29 16 22 N -0.51 -6.45 10.21 -9.58 -0.10 -6.55 16 23 C 0.31 3.49 7.75 -17.27 -0.13 3.36 16 24 O -0.48 -4.64 13.56 -18.73 -0.25 -4.89 16 25 C -0.19 -1.86 10.06 -39.36 -0.40 -2.26 16 26 C -0.06 -0.62 9.74 -39.20 -0.38 -1.00 16 27 C -0.12 -1.42 5.74 -104.57 -0.60 -2.02 16 28 C -0.09 -1.11 5.27 -28.09 -0.15 -1.26 16 29 C -0.09 -2.41 8.24 -38.44 -0.32 -2.73 16 30 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 31 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 32 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.09 1.46 6.38 -52.48 -0.33 1.12 16 34 H 0.40 5.13 6.63 -40.82 -0.27 4.86 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.63 8.10 -51.92 -0.42 0.21 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.40 1.81 9.06 45.56 0.41 2.22 16 40 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.25 8.13 -51.93 -0.42 0.83 16 44 H 0.13 3.77 5.74 -52.49 -0.30 3.46 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -31.70 369.24 -9.95 -41.65 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -4.66 Total: 12.66 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -5.89 Total: -18.00 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.24 Total: -37.60 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.17 Total: -17.77 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.70 -9.95 -41.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.527 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds