Wall clock time and date at job start Tue Mar 31 2020 20:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 120.00496 * 2 1 4 4 H 1.48498 * 109.46977 * 270.00160 * 3 2 1 5 5 H 1.48505 * 109.46953 * 29.99486 * 3 2 1 6 6 H 1.48495 * 109.47614 * 149.99749 * 3 2 1 7 7 C 1.39943 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00060 * 197.73216 * 7 2 1 9 9 C 1.41439 * 119.99986 * 17.72758 * 7 2 1 10 10 C 1.40786 * 120.18077 * 204.35508 * 9 7 2 11 11 C 1.37711 * 120.04114 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41286 * 359.97438 * 11 10 9 13 13 C 1.39884 * 120.36093 * 359.97438 * 12 11 10 14 14 C 1.47882 * 120.02877 * 179.97438 * 13 12 11 15 15 O 1.21540 * 120.00316 * 180.02562 * 14 13 12 16 16 N 1.34784 * 119.99828 * 0.02562 * 14 13 12 17 17 C 1.46494 * 119.99747 * 179.72127 * 16 14 13 18 18 H 1.08996 * 109.69115 * 34.73555 * 17 16 14 19 19 C 1.53325 * 109.68956 * 155.27255 * 17 16 14 20 20 C 1.52715 * 108.43750 * 189.52373 * 19 17 16 21 21 C 1.50734 * 110.59729 * 308.76112 * 20 19 17 22 22 N 1.32795 * 117.48974 * 197.83499 * 21 20 19 23 23 C 1.31903 * 122.34592 * 180.29108 * 22 21 20 24 24 O 1.35675 * 119.76345 * 180.02562 * 23 22 21 25 25 C 1.38927 * 120.46648 * 0.02562 * 23 22 21 26 26 C 1.38152 * 118.78930 * 359.86275 * 25 23 22 27 27 C 1.37485 * 122.35412 * 17.90653 * 21 20 19 28 28 C 1.50516 * 122.83435 * 359.23751 * 27 21 20 29 29 C 1.39034 * 119.94645 * 0.28170 * 13 12 11 30 30 H 0.97008 * 119.99941 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.97387 * 0.02562 * 10 9 7 32 32 H 1.07998 * 119.79033 * 179.97438 * 11 10 9 33 33 H 1.08004 * 119.82110 * 180.02562 * 12 11 10 34 34 H 0.96993 * 119.99830 * 359.97438 * 16 14 13 35 35 H 1.09005 * 109.64472 * 309.20992 * 19 17 16 36 36 H 1.09007 * 109.64230 * 69.63050 * 19 17 16 37 37 H 1.08998 * 109.25105 * 69.05625 * 20 19 17 38 38 H 1.09007 * 109.24955 * 188.47669 * 20 19 17 39 39 H 0.96695 * 114.00013 * 270.00307 * 24 23 22 40 40 H 1.07994 * 120.60880 * 179.88259 * 25 23 22 41 41 H 1.07995 * 120.51847 * 179.97438 * 26 25 23 42 42 H 1.09001 * 109.25747 * 257.40556 * 28 27 21 43 43 H 1.08998 * 109.26483 * 137.95931 * 28 27 21 44 44 H 1.08001 * 120.20124 * 179.70618 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0494 -1.2341 0.2854 9 6 1.3510 -2.4079 -0.3719 10 6 1.8273 -3.6500 0.0889 11 6 1.1859 -4.8127 -0.2760 12 6 0.0715 -4.7706 -1.0951 13 6 -0.4169 -3.5457 -1.5618 14 6 -1.6082 -3.5092 -2.4373 15 8 -2.0319 -2.4447 -2.8430 16 7 -2.2240 -4.6564 -2.7855 17 6 -3.4077 -4.6198 -3.6478 18 1 -3.3102 -3.8103 -4.3711 19 6 -3.5514 -5.9566 -4.3849 20 6 -4.6412 -5.8091 -5.4445 21 6 -5.8979 -5.2401 -4.8371 22 7 -7.0284 -5.3859 -5.5184 23 6 -8.1819 -4.9206 -5.0794 24 8 -9.3056 -5.0997 -5.8184 25 6 -8.2544 -4.2485 -3.8657 26 6 -7.0983 -4.0800 -3.1284 27 6 -5.9003 -4.5891 -3.6261 28 6 -4.6579 -4.4032 -2.7971 29 6 0.2223 -2.3630 -1.2071 30 1 -0.4850 0.8401 -0.0004 31 1 2.6963 -3.6910 0.7288 32 1 1.5550 -5.7634 0.0795 33 1 -0.4244 -5.6883 -1.3749 34 1 -1.8856 -5.5059 -2.4621 35 1 -2.6068 -6.2142 -4.8641 36 1 -3.8279 -6.7377 -3.6766 37 1 -4.2889 -5.1429 -6.2320 38 1 -4.8602 -6.7871 -5.8733 39 1 -9.4804 -4.3864 -6.4474 40 1 -9.1973 -3.8649 -3.5050 41 1 -7.1225 -3.5616 -2.1813 42 1 -4.6628 -5.1204 -1.9762 43 1 -4.6451 -3.3921 -2.3902 44 1 -0.1485 -1.4154 -1.5690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188682587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:47 Heat of formation + Delta-G solvation = -57.728432 kcal Electronic energy + Delta-G solvation = -27751.427656 eV Core-core repulsion = 23824.749408 eV Total energy + Delta-G solvation = -3926.678248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.93944 -40.89699 -39.18860 -38.57454 -37.05650 -35.61429 -34.55410 -34.14211 -31.99267 -31.25183 -31.01690 -29.54212 -27.18089 -25.43160 -24.72510 -23.68941 -23.41835 -22.75526 -21.34777 -21.03829 -19.60050 -19.32906 -18.22783 -17.72920 -17.39822 -16.99602 -16.70440 -16.38925 -16.27722 -15.77669 -15.47265 -15.43326 -15.05658 -14.75198 -14.65607 -14.44227 -14.27463 -14.17818 -14.03825 -13.46989 -13.31311 -13.05528 -12.93708 -12.81676 -12.74955 -12.55303 -12.43233 -12.18728 -11.99531 -11.91541 -11.85492 -11.47751 -11.07487 -10.76047 -10.73402 -10.46428 -10.13807 -9.63654 -9.44958 -9.36092 -8.65827 -6.36849 -0.05402 0.15192 0.40827 1.02671 1.36458 1.48480 1.50354 2.12169 2.18956 2.21307 2.43132 2.70822 2.80208 3.44956 3.61841 3.70373 3.75448 3.80282 3.83504 4.08849 4.13027 4.23793 4.37922 4.45404 4.46881 4.49397 4.60876 4.63799 4.76381 4.82536 4.91917 4.94054 5.01846 5.10409 5.13280 5.20605 5.22658 5.28850 5.33539 5.49015 5.54022 5.58124 5.89196 5.95169 6.07560 6.31119 6.54278 6.60319 6.72964 6.89247 6.89500 6.96481 7.35908 8.30743 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.002385 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.846913 B =11735.496967 C =12788.033363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.030 3.970 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.498 4.498 8 H 0.082 0.918 9 C 0.065 3.935 10 C -0.217 4.217 11 C -0.097 4.097 12 C -0.194 4.194 13 C -0.138 4.138 14 C 0.564 3.436 15 O -0.587 6.587 16 N -0.706 5.706 17 C 0.145 3.855 18 H 0.067 0.933 19 C -0.114 4.114 20 C -0.062 4.062 21 C 0.146 3.854 22 N -0.531 5.531 23 C 0.300 3.700 24 O -0.492 6.492 25 C -0.185 4.185 26 C -0.064 4.064 27 C -0.136 4.136 28 C -0.082 4.082 29 C -0.132 4.132 30 H 0.286 0.714 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.415 0.585 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.419 0.581 40 H 0.165 0.835 41 H 0.155 0.845 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.830 -11.191 -7.665 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.185 4.185 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.174 1.174 7 C -0.527 4.527 8 H 0.100 0.900 9 C 0.063 3.937 10 C -0.237 4.237 11 C -0.115 4.115 12 C -0.214 4.214 13 C -0.141 4.141 14 C 0.354 3.646 15 O -0.468 6.468 16 N -0.358 5.358 17 C 0.040 3.960 18 H 0.085 0.915 19 C -0.152 4.152 20 C -0.100 4.100 21 C 0.011 3.989 22 N -0.250 5.250 23 C 0.119 3.881 24 O -0.302 6.302 25 C -0.206 4.206 26 C -0.090 4.090 27 C -0.139 4.139 28 C -0.120 4.120 29 C -0.153 4.153 30 H 0.096 0.904 31 H 0.124 0.876 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.254 0.746 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.280 0.720 40 H 0.182 0.818 41 H 0.173 0.827 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.448 -11.243 -8.435 19.452 hybrid contribution 0.180 1.793 0.775 1.961 sum -13.268 -9.450 -7.660 18.001 Atomic orbital electron populations 1.69888 1.09151 1.30499 1.35464 1.26824 0.95422 1.04859 0.91416 0.85216 0.79295 0.75970 0.79349 1.19164 1.19437 1.17441 1.19856 0.98495 0.92236 1.42118 0.89952 1.17958 0.91929 0.93891 0.89936 1.21410 1.03832 0.92867 1.05610 1.20935 0.95466 0.97622 0.97458 1.20888 1.00271 0.95227 1.05009 1.19787 0.96969 0.95421 1.01949 1.18702 0.83019 0.83695 0.79231 1.90678 1.67537 1.31889 1.56715 1.45730 1.29720 1.08700 1.51678 1.20935 0.83475 0.99869 0.91698 0.91482 1.21826 1.00060 0.95191 0.98090 1.20370 0.88860 1.02811 0.97919 1.21062 0.92977 0.94357 0.90520 1.66986 0.99000 1.21541 1.37518 1.19270 0.85104 0.93143 0.90609 1.84728 1.37172 1.52012 1.56260 1.22285 1.00932 1.01265 0.96108 1.21838 0.91061 0.95892 1.00179 1.20462 0.96341 1.00697 0.96389 1.20729 0.90717 1.02626 0.97961 1.21455 0.98242 0.96570 0.99033 0.90376 0.87556 0.84368 0.84154 0.74606 0.88124 0.88880 0.89205 0.87714 0.72035 0.81771 0.82701 0.88542 0.92172 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.67 10.95 21.83 0.24 -45.44 16 2 C 0.03 1.55 5.14 85.26 0.44 1.98 16 3 Si 0.98 39.53 29.59 68.60 2.03 41.56 16 4 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.50 -26.95 9.05 23.47 0.21 -26.74 16 8 H 0.08 4.22 7.91 -2.91 -0.02 4.20 16 9 C 0.07 3.50 5.57 -21.32 -0.12 3.38 16 10 C -0.22 -9.96 9.78 22.77 0.22 -9.74 16 11 C -0.10 -3.68 10.01 22.18 0.22 -3.46 16 12 C -0.19 -7.18 9.55 22.70 0.22 -6.97 16 13 C -0.14 -6.26 5.87 -20.13 -0.12 -6.38 16 14 C 0.56 23.35 7.75 86.80 0.67 24.02 16 15 O -0.59 -29.33 15.99 -3.84 -0.06 -29.39 16 16 N -0.71 -19.94 5.04 -445.23 -2.24 -22.18 16 17 C 0.14 3.54 2.49 45.02 0.11 3.65 16 18 H 0.07 2.01 7.53 -2.39 -0.02 2.00 16 19 C -0.11 -1.81 5.46 30.61 0.17 -1.65 16 20 C -0.06 -1.07 5.91 29.76 0.18 -0.89 16 21 C 0.15 3.26 6.62 42.25 0.28 3.54 16 22 N -0.53 -12.84 10.21 -297.26 -3.03 -15.88 16 23 C 0.30 6.39 7.75 84.85 0.66 7.05 16 24 O -0.49 -8.60 13.56 -89.93 -1.22 -9.82 16 25 C -0.19 -3.36 10.06 22.41 0.23 -3.14 16 26 C -0.06 -1.27 9.74 22.52 0.22 -1.05 16 27 C -0.14 -3.05 5.74 -19.83 -0.11 -3.16 16 28 C -0.08 -1.94 5.27 29.71 0.16 -1.79 16 29 C -0.13 -7.22 8.24 23.01 0.19 -7.03 16 30 H 0.29 14.60 8.30 -92.70 -0.77 13.83 16 31 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 32 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.14 3.73 6.38 -2.91 -0.02 3.71 16 34 H 0.42 9.00 6.63 -92.71 -0.61 8.39 16 35 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.09 1.20 8.10 -2.38 -0.02 1.18 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.42 3.11 9.06 -74.06 -0.67 2.44 16 40 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 41 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 44 H 0.10 5.99 5.74 -2.91 -0.02 5.97 16 Total: -1.00 -74.39 369.24 -0.69 -75.09 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: -0.22 Total: 34.43 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 3.82 Total: -28.37 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -5.04 Total: -83.50 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -1.28 Total: -39.21 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -74.39 -0.69 -75.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.359 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds